BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G09800.1
Length=920
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478303 jgi|Araly1|478303|fgenesh2_kg.3__1004__AT3G09800.1 1249 0.0
Ahg942641 jgi|Araly1|942641|scaffold_603185.1 689 0.0
> Ahg478303 jgi|Araly1|478303|fgenesh2_kg.3__1004__AT3G09800.1
Length=879
Score = 1249 bits (676), Expect = 0.0
Identities = 805/865 (93%), Gaps = 18/865 (2%)
Strand=Plus/Plus
Query 61 CGATTTCTTCTGTCTCGACGATCTTGCGCTTTTCACATTTGAATCCTCCAATCCATTACT 120
||||||||||||||| ||||| ||||||||||||||||||| ||| |||||||||
Sbjct 27 CGATTTCTTCTGTCT---CGATCCTGCGCTTTTCACATTTGAA---TCC--TCCATTACT 78
Query 121 TCTTCTCCGATCTTTTATTCCGGTACATCTCA--AGTCTTACAACAATGTCTCCTGATTC 178
||||||||| || |||||||||| ||||||| |||||||||||||||||| ||||||
Sbjct 79 TCTTCTCCGGTCCATTATTCCGGTCCATCTCATCTGTCTTACAACAATGTCTCATGATTC 138
Query 179 TTGTCCTTTGGTAAAGAAGATTCTTCTTCTAGACTCTGAAGGAAAGCGTGTGGCTGTCAA 238
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 139 TTGTCCTTTGGTAAAGAACATTCTTCTTCTAGACTCTGAAGGAAAGCGTGTGGCTGTCAA 198
Query 239 GTATTACTCGGATGACTGGCCAACTAATGCCGCCAAGTTAAGTTTTGAGAAGTATGTATT 298
|||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||
Sbjct 199 GTATTACTCGGATGACTGGCAAACTAATGCCGTCAAGTTAAGTTTTGAGAAATATGTATT 258
Query 299 CTCAAAGACCTCTAAGACCAATGCTCGTACAGAAGCTGAGATCACACTGTTGGACAGCAA 358
||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 259 CTCAAAGACCTCTAAGACCAATGCTCGCACAGAAGCTGAGATCACACTGTTGGACAACAA 318
Query 359 TATTATTGTCTATAAGTTTGCCCAGGACCTTCACTTCTTTGTTACTGGAGGTGAAAATGA 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 319 TATTATTGTCTATAAGTTTGCCCAGGACCTTCACTTCTTTGTTACTGGAGGTGAAAATGA 378
Query 419 AAACGAGCTCATCTTAGCTTCTGTTCTTCAAGGCTTTTTTGATGCTGTTGCACTTCTTCT 478
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 379 GAACGAGCTCATCTTAGCTTCTGTTCTTCAAGGCTTTTTTGATGCTGTTGCACTTCT-CT 437
Query 479 -GAGGAGCAATGTGGAAAAGATGGAAGCCCTTGAGAACTTGGATCTCATCTTTCTATGCC 537
||||| |||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 438 TGAGGAACAATGTGGAAAAGATGGAAGCCCTCGAGAACTTGGATCTCATCTTTTTATGCC 497
Query 538 TTGATGAAATGGTCGATCAAGGGGTGGTTCTTGAAACGGATCCAAACGTCATTGCGGGGA 597
||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
Sbjct 498 TTGATGAAATGGTCGATCAGGGGGTGGTTCTTGAAACGGACCCAAACGTCATTGCGGGTA 557
Query 598 AAGTAGCAATGCAGAGCACAGAAGCTAGTGGTTCACTCTCTGAACAGACACTAACACAAG 657
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 558 AAGTAGCAATGCAGAGCACAGAAGCTAGTGGTTCACTCTCTGAACAGACATTAACTCAAG 617
Query 658 CGCTAGCAACAGCTCGGGAGCATCTGGCAAGAAGTCTGCTTACATGAGTTCCATCATGGC 717
|||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 618 CGCTAGCAACAGCTCGGGAGCATCTGGCGAGAAGTCTGCTTACATGAGTTTAATCATGGC 677
Query 718 GACACAATAATAGAAGCATGGAC-TTCAATTTCTATGTTGAGCAACTTTTTATTTTTGAG 776
||||| |||| |||| |||||| |||||||||| || ||| |||||||| || ||||
Sbjct 678 CACACA-TAATTGAAGAATGGACCTTCAATTTCTTTGATGAACAACTTTT-ATGAGTGAG 735
Query 777 TCTTTCGGTTTGAAAGTCTCTAATAATTGAATTCTGCAAACAAACTCTTAAAGTTTGGTA 836
|||| ||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 736 TCTTCCGGTTTGAAAGTCTCTAATAATTGAATTCTGCATGCATACTCTTAAAGTTTGGTA 795
Query 837 GTAAAGGTTTGATTATATATATAGCTTTGTGCAATGCATG-AAT-GTTTTTGGAGAGTGG 894
||| |||||||||| |||||||||||||||||||||| || ||| |||||||||||||||
Sbjct 796 GTAGAGGTTTGATTTTATATATAGCTTTGTGCAATGC-TGGAATTGTTTTTGGAGAGTGG 854
Query 895 AATTTTATTACTCTAATTGAAGTCT 919
||| |||||||||||||| ||||||
Sbjct 855 AATATTATTACTCTAATTAAAGTCT 879
> Ahg942641 jgi|Araly1|942641|scaffold_603185.1
Length=587
Score = 689 bits (373), Expect = 0.0
Identities = 490/547 (90%), Gaps = 6/547 (1%)
Strand=Plus/Plus
Query 173 TGATTCTTGTCCTTTGGTAAAGAAGATTCTTCTTCTAGACTCTGAAGGAAAGCGTGTGGC 232
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 35 TGATTCTTGTCCTTTGGTAAAGAACATTCTTCTTCTAGACTCTGAAGGAAAGCGTGTGGC 94
Query 233 TGTCAAGTATTACTCGGATGACTGGCCAACTAATGCCGCCAAGTTAAG-TTTTGAGAAGT 291
||||||||||||||| ||||| ||| |||||||||| ||||||||| | |||||| || |
Sbjct 95 TGTCAAGTATTACTCAGATGATTGGACAACTAATGCTGCCAAGTTA-GCTTTTGAAAAAT 153
Query 292 ATGTATTCTCAAAGACCTCTAAGACCAATGCTCGTACAGAAGCTGAGATCACACTGTTGG 351
|||||||||| ||||||||||| ||||||||||| |||||||| ||||||||||||||||
Sbjct 154 ATGTATTCTCGAAGACCTCTAAAACCAATGCTCGCACAGAAGCGGAGATCACACTGTTGG 213
Query 352 ACAGCAATATTATTGTCTATAAGTTTGCCCAGGACCTTCACTTCTTTGTTACTGGAGGTG 411
| | |||||| |||||||||||||||||||||| || || ||||||||||| |||||||
Sbjct 214 AGAATAATATTGTTGTCTATAAGTTTGCCCAGGATCTGCATTTCTTTGTTACCGGAGGTG 273
Query 412 AAAATGAAAACGAGCTCATCTTAGCTTCTGTTCTTCAAGGCTTTTTTGATGCTGTTGCAC 471
||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||
Sbjct 274 AAAATGAAAACGAGCTCGTCTTATCATCTGTTCTTCAAGGCTTTTTTGATGCTGTTGCA- 332
Query 472 TT-CTTCTGAGGAGCAATGTGGAAAAGATGGAAGCCCTTGAGAACTTGGATCTCATCTTT 530
|| |||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 333 TTACTTCTGAGGAACAATGTTGAAAAGATGGAAGCCCTTGAAAACTTGGATCTCATCTTT 392
Query 531 CTATGCCTTGATGAAATGGTCGATCAAGGGGTGGTTCTTGAAACGGAT-CCAAACGTCAT 589
| ||||||||||| ||||| ||||||||| ||||||| ||||| ||| |||| || ||
Sbjct 393 TTGTGCCTTGATGAGATGGTTGATCAAGGGATGGTTCTCGAAACAGATGCCAAT-GTTAT 451
Query 590 TGCGGGGAAAGTAGCAATGCAGAGCACAGAAGCTAGTGGTTCACTCTCTGAACAGACACT 649
|||||| |||||||||||||| ||| ||||||| ||||||||||||||||||||||| |
Sbjct 452 TGCGGGAAAAGTAGCAATGCAAAGCGCAGAAGCAAGTGGTTCACTCTCTGAACAGACGTT 511
Query 650 AACACAAGCGCTAGCAACAGCTCGGGAGCATCTGGCAAGAAGTCTGCTTACATGAGTTCC 709
||| ||||| | ||||||||||||||||| || ||||||||||| ||||||| | || |
Sbjct 512 AACTCAAGCATTGGCAACAGCTCGGGAGCACCTTGCAAGAAGTCTTCTTACATAATTTTC 571
Query 710 ATCATGG 716
||| |||
Sbjct 572 ATCGTGG 578
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34120010715
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5