BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G09810.1
Length=1551
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928658 jgi|Araly1|928658|scaffold_301115.1 1975 0.0
Ahg487101 jgi|Araly1|487101|fgenesh2_kg.6__235__AT5G03290.1 1179 0.0
> Ahg928658 jgi|Araly1|928658|scaffold_301115.1
Length=1160
Score = 1975 bits (1069), Expect = 0.0
Identities = 1130/1160 (97%), Gaps = 1/1160 (0%)
Strand=Plus/Plus
Query 47 GAGGCTGGAAGCGATGACCATGACAGCATTTCTCGCGAGACGGCTTATCGGTAACGGATC 106
|||||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||
Sbjct 2 GAGGCTGGAAGCGATGACCATGGCAGCATTTCTCGCGAGACGGCTTATTGGTAACCGATC 61
Query 107 GAGCCAGATTCTCGGGACTTCGAGTTCTAGCTCCGGTCCGTTCATTTCCGTTTCTAGGGC 166
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 62 GAGCCAGATTCTCGGGACTTCGAGTTCTAGCTCCGGTGCGTTCATTTCCGTTTCTAGGGC 121
Query 167 TTTCTTCTCCTCCTCCACTCCGATCAAAGCTACTCTCTTTCCCGGTGATGGGATCGGTCC 226
||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 122 TTTCTTCTCCTCCACCACTCCGATCAAAGCAACTCTCTTTCCCGGTGATGGGATCGGTCC 181
Query 227 CGAAATCGCTGAATCTGTCAAGCAGGTGTTTACTGCCGCTGATGTGGTTATTGATTGGGA 286
||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 182 CGAAATCGCTGAATCTGTCAAACAGGTGTTTACTGCCGCTGATGTGACCATTGATTGGGA 241
Query 287 CGAACAGTTTGTTGGTACTGAAGTAGATCCTAGAACCAATAGTTTCTTGACATGGGATAA 346
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 242 CGAACAGTTTGTTGGTACTGAAGTAGATCCTAGAACCAATAGTTTCTTGACTTGGGAAAA 301
Query 347 TCTTCAATCTGTGCTTAAAAACAAGGTTGGTTTGAAAGGACCAATGGCTACTCCAATTGG 406
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 302 TCTTCAATCTGTGCTTAAAAACAAGGTTGGTTTGAAAGGACCAATGGCAACGCCAATTGG 361
Query 407 AAAGGGTCACCGTTCCTTGAACCTTACTCTTAGGAAAGAGCTGAATTTGTATGCCAATGT 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 362 AAAGGGTCACCGTTCCTTGAACCTTACTCTTAGGAAAGAGCTGAATTTGTATGCCAATGT 421
Query 467 TAGGCCTTGTTACAGTCTTCCTGGTTACAAAACCCGTTATGATGATGTTGATCTCATTAC 526
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 TAGGCCTTGCTACAGTCTTCCTGGTTACAAAACCCGTTATGATGATGTTGATCTCATTAC 481
Query 527 CATTCGTGAGAACACTGAAGGAGAGTACAGTGGGCTTGAACACCAGGTCGTCAAGGGTGT 586
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 482 CATTCGTGAAAACACCGAAGGAGAGTACAGTGGGCTTGAACACCAGGTCGTCAAGGGTGT 541
Query 587 AGTGGAAAGTCTTAAAATTATTACCCGTAAGGCGAGTATGAGAGTTGCCGAGTATGCCTT 646
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 542 GGTGGAAAGTCTTAAAATTATTACCCGTAAGGCGAGTATGAGAGTTGCTGAGTATGCCTT 601
Query 647 TCTTTATGCCAAGACTCACGGAAGGAAGAAAGTTTCTGCAATTCACAAAGCCAACATTAT 706
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 602 TCTTTATGCCAAGACTCACGGAAGGAAGAAAGTTTCAGCAATTCATAAAGCCAACATTAT 661
Query 707 GCAGAAAACTGATGGTCTTTTCCTGCAGTGTTGTGATGAAGTTGCTGCGAAGTATCCTGA 766
||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 662 GCAGAAAACTGATGGTCTTTTCCTGCAGTGTTGTGATGAGGTTGCTAAGAAGTATCCTGA 721
Query 767 GATATATTACGAGAAGGTTGTTATTGACAATTGCTGTATGATGCTTGTGAAAAACCCAGC 826
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 722 GATATATTACGAGAAGGTTGTTATTGACAATTGCTGTATGATGCTTGTGAAAAACCCAGC 781
Query 827 ACTTTTTGATGTCTTGGTGATGCCAAATCTCTATGGAGATATTATCAGCGATTTGTGTGC 886
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 782 ACTTTTTGATGTCTTGGTGATGCCAAATCTCTATGGAGATATTATCAGCGATTTGTGTGC 841
Query 887 TGGACTTGTTGGGGGACTAGGACTGACTCCTAGTATGAATATTGGGGAGGATGGTATTGC 946
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 842 CGGACTTGTTGGGGGACTAGGACTGACTCCTAGTATGAATATTGGGGAGGATGGTATTGC 901
Query 947 CCTTGCTGAAGCTGTTCACGGCTCTGCACCTGATATTGCTGGAATGAACCTGGCGAACCC 1006
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 902 CCTTGCTGAAGCTGTTCACGGCTCTGCACCTGATATTGCTGGAAAGAACCTGGCGAACCC 961
Query 1007 AACAGCTTTGCTACTGAGTGGAGTGATGATGTTGCGGCACCTGAAGCTCAACAAACAAGC 1066
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 962 AACAGCTTTGCTACTGAGTGGAGTGATGATGTTGCGGCACCTGAAGCTCAACAAACAAGC 1021
Query 1067 AGAGCAAATCCACAGTGCCATCATCAACACAATAGCCGAGGGAAAGTATAGAACTGCTGA 1126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1022 AGAGCAAATCCACAGTGCCATCATCAACACAATAGCCGAGGGAAAGTATAGAACTGCTGA 1081
Query 1127 TCTCGGAGGTTCCTCAACTACAACAGATTTCACAAAAGCCATCTGTGATCATCTCTAAAC 1186
|||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1082 TCTCGGAGGTACCTCAACCACAACAGATTTCACAAAAGCCATCTGTGATCATCTCTAAAC 1141
Query 1187 ACCCGTGAAAAACCATAATT 1206
|||||| |||||||| ||||
Sbjct 1142 ACCCGT-AAAAACCAGAATT 1160
> Ahg487101 jgi|Araly1|487101|fgenesh2_kg.6__235__AT5G03290.1
Length=1425
Score = 1179 bits (638), Expect = 0.0
Identities = 1003/1175 (85%), Gaps = 41/1175 (3%)
Strand=Plus/Plus
Query 35 ctGCGTCCTTCTGAG-GCTGGAAGCGATGACCATGACAGCATTTCTCGCGAGACGGCTTA 93
||||||||||||| | ||| |||| |||||||||| ||||| ||||||| ||||||| |
Sbjct 35 CTGCGTCCTTCTG-GTGCTTGAAGAGATGACCATGGCAGCAAATCTCGCGCGACGGCTGA 93
Query 94 TC---GGTAACGGATCGAGC-CAGATTCTCGG-GACT-TCGAGTTCTAGCTCCGGT-CCG 146
|| || ||| |||||| | ||||| || || | || | || |||||||| ||| | |
Sbjct 94 TCGGAGGAAACCGATCGA-CTCAGATCCTTGGTG-CTGT-GAACTCTAGCTCAGGTGCGG 150
Query 147 TTCATTTCCGTTTCTAGGGCTTTCTTCTCCTCCTCCACTCCGATCAAAGCTACTCTCTTT 206
| | |||||| |||||||||||| ||||||| |||||||||||| || |||||| ||
Sbjct 151 CT-ACTTCCGTCGCTAGGGCTTTCTGCTCCTCCACCACTCCGATCACCGCAACTCTC-TT 208
Query 207 CCC-GGTGATGGGATCGGTCCCGAAATCGCTGAATCTGTCAAGCAGGTGTTTACTGCCGC 265
||| |||||||||||||||||||| ||||| ||||||||||| |||||||||| | ||
Sbjct 209 CCCTGGTGATGGGATCGGTCCCGAGATCGCCGAATCTGTCAAAAAGGTGTTTACAACTGC 268
Query 266 TGATGTGGTTATTGATTGGGACGAACAGTTTGTTGGTACTGAAG-TAGATCCTAGAACCA 324
|| |||| ||||| ||||| ||||| | |||||| |||| || ||||||| |||| ||
Sbjct 269 TGGTGTGCCAATTGAGTGGGAAGAACACTATGTTGGGACTG-AGATAGATCCGAGAA-CA 326
Query 325 -ATAGTTTCTTGACATGGGATAA-TCTTC-AATCTGTGCTTAAAAACAAGGTTGGTTTGA 381
| ||||||||||||||||| || || || ||||||||| || |||||| ||||||||||
Sbjct 327 CAGAGTTTCTTGACATGGGA-AAGTC-TCGAATCTGTGCGTAGAAACAAAGTTGGTTTGA 384
Query 382 AAGGACCAATGGCTACTCCAATT-GGAAAGGGTCACCGTTCCTTGAACCTTACTCTTAGG 440
|||| |||||||||||||||||| ||||| ||||||||||| |||||||| |||||||||
Sbjct 385 AAGGTCCAATGGCTACTCCAATTGGGAAA-GGTCACCGTTCTTTGAACCTGACTCTTAGG 443
Query 441 AAAGAGCTGAATTTGTATGCCAATGTTAGGCCTTGTTACAGTCTTCCTGGTTACAAAACC 500
|||||||| ||| | |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 444 AAAGAGCTTAATCTATATGCCAATGTTAGACCTTGTTACAGTCTTCCTGGTTACAAAACT 503
Query 501 CGTTATGATGATGTTGATCTCATTACCATTC-GTGAGAACACTGAAGGAGAGTACAGTGG 559
||||| ||||| |||||||||||||||| || | || ||||| |||||||| ||||||||
Sbjct 504 CGTTACGATGACGTTGATCTCATTACCA-TCAGAGAAAACACGGAAGGAGAATACAGTGG 562
Query 560 GCTTGAACACCAGGTCGTCAAG-GGTGTAGTGGAAAGTCTTAAAATTATTACCCGTAAGG 618
|||||||| ||||| || || ||||| || |||||||||||| | ||||||||| |||
Sbjct 563 CCTTGAACATCAGGTTGT-TAGAGGTGTGGTTGAAAGTCTTAAAGTCATTACCCGTCAGG 621
Query 619 CGAGTATGAGAGTTGCCGAGTATGCCTTTCTTTATGCCAAGACTCACGGAAGGA-AGAAA 677
||||| |||||||||| |||||||| ||||| |||||||||||||| |||| || ||| |
Sbjct 622 CGAGTTTGAGAGTTGCAGAGTATGCGTTTCTCTATGCCAAGACTCATGGAA-GAGAGAGA 680
Query 678 GTTTCTGCAATTCACAAAGCCAACATTATGCAGAAAACTGATGGTCTTTTCCTGC-AGTG 736
|||||||| || ||||||||||||||||||||||||||||| |||||||| || | ||||
Sbjct 681 GTTTCTGCTATCCACAAAGCCAACATTATGCAGAAAACTGACGGTCTTTTTCT-CAAGTG 739
Query 737 TTGT-GATGAAGTTGCTGCGAAGTATCCTGAGATATA-TTACGAGAAGGTTGTTATTGAC 794
|||| | ||| ||||||| |||||||||||||||| | ||||||| |||| |||||||||
Sbjct 740 TTGTCG-TGAGGTTGCTGAGAAGTATCCTGAGATA-ACTTACGAGGAGGTCGTTATTGAC 797
Query 795 AATTGCTGTATGATGCTTGTGAAAAACCCAGCACTTTTTGATGTCTTGGTGATGCCAAAT 854
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 798 AACTGCTGTATGATGCTTGTGAAAAACCCAGCACTTTTTGATGTCTTGGTGATGCCAAAC 857
Query 855 CTCTATGGAGATATTATCAGCGATTTGTGTGCTGGACTTG-TTGGGGGACTAGGACTGAC 913
|| || || || ||||| || ||| ||||||| ||| ||| |||| ||||||||| ||||
Sbjct 858 CTGTACGGTGACATTATTAGTGATCTGTGTGCCGGA-TTGGTTGGAGGACTAGGATTGAC 916
Query 914 TCCTAGTATG-AATATTGGGGAGGATGGTATTGCCCTTGCTGAAGCTGTTCACGGCTCTG 972
||| ||| || ||||| || || ||||| | |||||||||||||| |||||||| ||||
Sbjct 917 TCCAAGT-TGTAATATCGGAGAAGATGGCGTAGCCCTTGCTGAAGCAGTTCACGGTTCTG 975
Query 973 CACCTGATATTGCTGGAATGAACCTGGCGAACCCAACAGCTTTGCTACTGAGTGGAGTGA 1032
|||||||||| ||||||| |||| ||||||||||||| || ||||| |||||||||||||
Sbjct 976 CACCTGATATCGCTGGAAAGAACTTGGCGAACCCAACCGCGTTGCTTCTGAGTGGAGTGA 1035
Query 1033 TGATGTTGCGGCACCTGAAGCTCAACAAACAAGCAGAGCAAATCCACAGTGCCATCATCA 1092
|||||||||| ||||||||||||||| |||||||||| |||||||||||||| |||||||
Sbjct 1036 TGATGTTGCGTCACCTGAAGCTCAACGAACAAGCAGAACAAATCCACAGTGCAATCATCA 1095
Query 1093 ACACAATAGCCGAGGGAAAGTATAGAACTGCTGATCTCGGAGGTTCCTCAACTACAACAG 1152
|||| ||||| |||||||| || ||||| || ||||| |||||| || || || || |
Sbjct 1096 ACACCATAGCAGAGGGAAAATACAGAACCGCGGATCTTGGAGGTAGTTCGACCACCACGG 1155
Query 1153 ATTTCACAAAAGCCATCTGTGATCATCTCTAAACA 1187
| |||||||| || |||||||||||||||| ||||
Sbjct 1156 AATTCACAAAGGCAATCTGTGATCATCTCTGAACA 1190
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58087623625
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5