BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G09830.1
Length=1911
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478307 jgi|Araly1|478307|fgenesh2_kg.3__1008__AT3G09830.1 2377 0.0
Ahg939712 jgi|Araly1|939712|scaffold_600256.1 924 0.0
> Ahg478307 jgi|Araly1|478307|fgenesh2_kg.3__1008__AT3G09830.1
Length=1841
Score = 2377 bits (1287), Expect = 0.0
Identities = 1604/1750 (92%), Gaps = 49/1750 (3%)
Strand=Plus/Plus
Query 175 AATCCTCGATCTCTTTTGTATCGTGA-TTCATTAACCACTTCATGATAATTATAATCTTC 233
|||| ||||||||||||||||||| | ||||| |||| ||| | ||| |||||||| ||
Sbjct 128 AATCATCGATCTCTTTTGTATCGT-AGTTCATGAACCCCTTTGTAATATTTATAATCATC 186
Query 234 CTTCTCTTCTGACGATTGAATTACATCTTCTTCTGATAGCTGTTCTGAtttt-t-ttCTG 291
||||||||||| |||||| ||||||||||||||||||| ||| ||||||| | | | |
Sbjct 187 CTTCTCTTCTGGCGATTGGATTACATCTTCTTCTGATA-AAGTTTTGATTTTGTGTAC-G 244
Query 292 TATACAAAG-TAAATTCA-AAGTGTTTTATTGGTGTCCTGCAGTGGACAAACATCGGTAT 349
||| || | || | | | |||| |||||| ||||||||||||||| |||| ||||| |
Sbjct 245 AATATAATGTTACA-TGATCAGTG-TTTATTTGTGTCCTGCAGTGGAGAAACCTCGGTGT 302
Query 350 TTTAATCTCCTCTCGATAATGAAGTGTTTCTTGTTCTCTGGTGGGGATAAGAGAGGGGAA 409
||||||||| | ||||||||||||||||||||||| ||||||||||| |||| |||||||
Sbjct 303 TTTAATCTCTTTTCGATAATGAAGTGTTTCTTGTTTTCTGGTGGGGACAAGAAAGGGGAA 362
Query 410 CAGAAGACCCCTATTTCGGTTTCATTGACCTCTATCTTCTCTGACCGCGAAATAAACCGA 469
|||||||||||||| ||||| |||||||| |||| |||||||||||||||||| ||||||
Sbjct 363 CAGAAGACCCCTATCTCGGTCTCATTGACTTCTAACTTCTCTGACCGCGAAATGAACCGA 422
Query 470 AGCGGGTCAGAGTTCAACTCTCGTGATGTCTCTGGGACGAGCACAGAATCATCCATGGGG 529
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 423 AGCGGGTCAGAGTTCAACTCTCGGGATGTCTCTGGGACGAGCACAGAGTCATCCATGGGG 482
Query 530 AGGAAGAACTCGTACCCTCCGGTGTCTACTAGAGCAAGTAATCTCAGAGAGTTCAGCATT 589
|||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 483 AGGAAGAACTCGTACCCTACAATGTCTACTAGAGCAAGTAATCTCAGAGAGTTCAGCATT 542
Query 590 ACTGATCTCAAGTCTGCAACAAAGAACTTTAGCCGATCTGTTATGATTGGAGAAGGCGGT 649
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 543 ACTGATCTCAAGTCTGCAACAAAGAACTTTAGCCGATCTGTTATGATCGGAGAAGGTGGT 602
Query 650 TTCGGTTGTGTCTTCAGGGGCACAGTGAGGAACTTAGAGGACTCGTCAGTTAAAATCGAA 709
|||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||
Sbjct 603 TTCGGTTGTGTCTTCAGGGGGACAGTGAGGAACTTAGAGGACCCGTCAAATAAAATCGAA 662
Query 710 GTCGCAGTGAAGCAGCTCGGTAAAAGAGGGTTGCAGGGGCATAAGGAATGGGTTACGGAA 769
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 663 GTCGCGGTGAAGCAGCTCGGTAAAAGAGGGTTGCAGGGGCATAAGGAATGGGTTACGGAA 722
Query 770 GTGAACTTCCTCGGAATAGTTGAGCATACAAACTTGGTGAAATTGCTTGGCTATTGTGCA 829
|||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 723 GTGAACTTCCTCGGGATAGTTGAGCATACAAACTTGGTGAAATTGCTTGGCTACTGTGCC 782
Query 830 GAAGATGATGAACGTGGAATCCAACGGCTTTTGGTTTATGAATACATGCCTAACCGAAGT 889
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 783 GAAGATGATGAACGTGGAATCCAACGGCTTTTGGTTTATGAATACATGCCTAACCGAAGT 842
Query 890 GTTGAATTCCACTTATCCCCTCGGTCACTCACAGTTCTTACTTGGGACCTCAGACTGAGA 949
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 843 GTTGAATTCCACTTATCCCCTCGGTCACTCACAGTTCTTACTTGGGACCTTAGATTGAGA 902
Query 950 ATCGCCCAAGATGCAGCTCGCGGATTAACATACCTGCATGAAGAAATGGAGTTTCAGATA 1009
|||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||
Sbjct 903 ATCGCCCAAGATGCAGCTCGTGGCTTAACATACCTGCACGAAGAAATGGAGTTTCAGATA 962
Query 1010 ATATTCCGCGATTTCAAGTCCTCGAACATTCTTTTGGATGAGGACTGGAAAGCAAAGCTC 1069
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 ATATTCCGGGATTTCAAGTCCTCGAACATTCTTTTGGATGAGGACTGGAAAGCAAAGCTC 1022
Query 1070 TCAGATTTCGGTTTGGCTCGTTTAGGTCCATCTGAAGGATTAACCCATGTTTCTACTGAT 1129
|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 1023 TCAGATTTCGGTTTGGCTCGTTTAGGTCCATCGGAAGGACTAACCCATGTTTCTACTGAT 1082
Query 1130 GTTGTAGGTACAATGGGTTATGCAGCACCTGAATACATTCAAACCGGCCGTCTCACATCG 1189
|| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1083 GTCGTTGGTACAATGGGTTATGCAGCACCTGAATACATTCAAACCGGTCGTCTCACATCG 1142
Query 1190 AAAAGCGATGTGTGGGGTTATGGAGTCTTCCTCTATGAGCTTATCACTGGGAGGCGACCG 1249
||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1143 AAAAGCGATGTGTGGGGATATGGAGTCTTCCTCTATGAGCTTATCACAGGGAGACGACCG 1202
Query 1250 GTGGACAGAAACAGACCCAAGGGAGAGCAGAAGCTTCTAGAATGGGTGAGACCTTATTTA 1309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1203 GTGGACAGAAACAGACCCAAGGGAGAGCAGAAGCTTCTAGAATGGGTGAGACCTTATTTA 1262
Query 1310 TCTGACACAAGGAAGTTCAAGCTCATATTAGATCCAAGGCTGGAAGGGAAGTACCCGATC 1369
|||||||||||||||||||||||||||||||| || ||||| ||||| |||||||| |||
Sbjct 1263 TCTGACACAAGGAAGTTCAAGCTCATATTAGACCCGAGGCTCGAAGGAAAGTACCCAATC 1322
Query 1370 AAATCGGTTCAAAAGCTAGCAGTTGTGGCCAACAGATGTTTGGTTAGGAACTCAAAGGCA 1429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1323 AAATCGGTTCAAAAGCTAGCAGTTGTGGCCAACAGATGTTTGGTTAGGAACTCAAAGGCA 1382
Query 1430 CGTCCCAAGATGAGTGAGGTTTTAGAGATGGTGAACAAAATTGTGGAAGCTTCTTCAGGA 1489
|||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||
Sbjct 1383 CGTCCCAAGATGAGTGAGGTGTTAGAGATGGTGACCAAGATTGTGGAAGCTTCTTCAGGG 1442
Query 1490 AATGGCAGCCCACAGCTAGTTCCGCTGAACAGTGTAAAAGCTTCGAGAGACGCGAGAGGA 1549
|| |||||||| ||||||||||||||||||||| ||||||||||||||| |||| |||||
Sbjct 1443 AACGGCAGCCCGCAGCTAGTTCCGCTGAACAGTCTAAAAGCTTCGAGAGGCGCGGGAGGA 1502
Query 1550 AAGAACAATGGTGGTGGCGGTGAAGGAGGTTGGTTTGGCAAGTTATGGAATCCAAAGACA 1609
||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1503 AAGAACAATGGTGGTAGCGGTGAAGGAGGTTGGTTTGGCAAGTTATGGAATCCGAAGACA 1562
Query 1610 ATAAGAGCTTGTTGACTGCTTATAGAATTCAACCTCTTCTTACAGCaaaaaaaaG-AGTC 1668
||||||||||||||||| ||| |||||||||||||||||||||| ||| ||||| | ||
Sbjct 1563 ATAAGAGCTTGTTGACTTCTT-TAGAATTCAACCTCTTCTTACA--AAAGAAAAGGACTC 1619
Query 1669 AAGAAAGGTTTCATGGAGATTCCGAAGGTTGAAGATTCTAGCGAGATCAAGATGAAGCTC 1728
||||||||||| ||||||||| | ||| ||||||||| | ||||||||||||| ||||||
Sbjct 1620 AAGAAAGGTTTTATGGAGATTGCAAAGCTTGAAGATTGTGGCGAGATCAAGATCAAGCTC 1679
Query 1729 A---T---ATACATACATAAAGATAATTATATATGAAGATTTGTGAAAGATTCTAAAATG 1782
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1680 AAGCTCGTATACATACATAAAGATAATTATATATGAAGATTTGTGAAAGATTCTAAAATG 1739
Query 1783 ATGAAATATGATTTTTGTATGAACTTATGAATAGTAACCACAGCTAAATTAGTAAGATAT 1842
|| | | | | || ||| || | ||| || || | || || | |||
Sbjct 1740 AT-ACAGCTTAATTA-GTAAGA--T-ATG--TA-TA--------T---TT--TA-G-TAT 1776
Query 1843 GTATATTAAGCAAGAACGGCTTATCAGAGTTTT-GTTCCAAAGCTGATCAATCTACTCGT 1901
||| | ||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1777 --ATA--A-GCAAGAATGGCTTATCAGAGTTTTTGTTCCAAAGCTGATCAATCTACTCGT 1831
Query 1902 GCTTAAGTGT 1911
||||||||||
Sbjct 1832 GCTTAAGTGT 1841
> Ahg939712 jgi|Araly1|939712|scaffold_600256.1
Length=1306
Score = 924 bits (500), Expect = 0.0
Identities = 974/1197 (81%), Gaps = 56/1197 (5%)
Strand=Plus/Plus
Query 462 TAAACCGAAGCGGGTCAGAGTTCAACT-CTCGTGATGTCTCTGGGACGAGCACAGAATCA 520
||||| |||||| ||||| ||| | | | || ||||| ||||| |||||||| | ||||
Sbjct 112 TAAACAAAAGCGGTTCAGATTTC-AGTCCCCGGGATGTTTCTGGAACGAGCACGGTATCA 170
Query 521 TCCA-TGGGGAGGAAGAACTCGTACCCTCCG-GTGTCTA-CTAGAGCAAGTAATCTCAGA 577
|||| | || | | |||||| || || | |||| | |||||| || || || |||
Sbjct 171 TCCACT-GGTA-G--GAACTCCAACACT-AGCATGTC-AGCTAGAGAAAACAACCTTAGA 224
Query 578 GAGTTCAGC-ATTACTGATCTCAAGTCTGCAACAAAGAACTTTAGCCGATCTGTTATGAT 636
||||||| | ||| |||||| || ||||| |||| |||||| ||| | |||| ||||||
Sbjct 225 GAGTTCA-CTATTGGTGATCTTAAATCTGCCACAAGGAACTTCAGCAGGTCTGGTATGAT 283
Query 637 TGGAGAAGGCGGTTTCGGTTGTGTCTTCAGGGGCACAG-TGAGGAACTTAGAGGACTCGT 695
||| ||||||||||| |||||||||| | |||| || | | | ||||||||| ||| |||
Sbjct 284 TGGGGAAGGCGGTTTTGGTTGTGTCTACTGGGGAAC-GATCAAGAACTTAGAAGACCCGT 342
Query 696 CAG-TTAAAATCGAAGTCGCAGTGAAGCAGCTCGGTAAAAGAGGGTTGCAGGGGCATAAG 754
| | |||||||||||||| || || ||||| || ||||||||||||||||| |||||
Sbjct 343 C-GAAGAAAATCGAAGTCGCGGTTAAACAGCTTGGCAAAAGAGGGTTGCAGGGTCATAAA 401
Query 755 GAATGGGTTACGGAAGTGAACTTCCTCGGAATAGTTGAGCATACAAACTTGGTGAAATTG 814
|||||||| || ||||| ||||| ||||| |||| |||||| |||||||||||||||||
Sbjct 402 GAATGGGTGACTGAAGTAAACTTTCTCGGTGTAGTCGAGCATTCAAACTTGGTGAAATTG 461
Query 815 CTT-GG-CTATTGTGCAGAAGATGATGAACGTGGAATCCAACGGCTTTTGGTTTATGAAT 872
|| || | ||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 462 -TTGGGAC-ATTGTGCAGAAGACGATGAACGTGGAATCCAAAGGCTTTTGGTTTATGAAT 519
Query 873 ACATGCCTAACCGAAGTGTTGAATTCCACTTATCCCCTCGGTCACTC-ACAGTTCTTACT 931
| ||||| |||| ||| || || ||||| |||||||| ||||||| | ||||| ||||||
Sbjct 520 ATATGCCAAACCAAAGCGTCGAGTTCCATTTATCCCCGCGGTCAC-CGACAGTACTTACT 578
Query 932 TGGGACCTCAGACTGAGAATCGCCCAAGATGCAGCTCGCGGATTAACATACCTGCATGAA 991
|||||||||||| ||||||| |||||||| |||||||| || ||||||||||| ||||||
Sbjct 579 TGGGACCTCAGATTGAGAATAGCCCAAGACGCAGCTCGGGGTTTAACATACCTTCATGAA 638
Query 992 GAAATGGAGTTTCAGATAATATTCCGCGATTTCAAGTCCTCGAACATTCT-TTTGGATGA 1050
|||||||| ||||||||||| ||||| ||||||||||| || |||||||| || || ||
Sbjct 639 GAAATGGACTTTCAGATAATCTTCCGTGATTTCAAGTCATCCAACATTCTATTAGG-CGA 697
Query 1051 GGACTGGAAAGCAAAGCTCTCAGATTTCGGTTTGGCTCGTTTAGGTCCATCTGAAGGATT 1110
| | |||||||| ||||| |||||||||||| ||||||| |||||||| || |||||
Sbjct 698 GAATTGGAAAGCGAAGCTTTCAGATTTCGGTCTGGCTCGCTTAGGTCCTTCACCAGGATC 757
Query 1111 AACCCATGTTTCTACTGATGTTGTAGGTACAATGGGTTATGCAGCACCTGAATACATTCA 1170
|| ||||||||||||||||| ||||| ||||||||||| ||||| || |||||||| ||
Sbjct 758 AAGTCATGTTTCTACTGATGTAGTAGGAACAATGGGTTACGCAGCTCCAGAATACATCCA 817
Query 1171 AACCGGCCGTCTCACATCGAAAAGCGATGTGTGGGGTTATGGAGTCTTCCTCTATGAGCT 1230
|||||| |||||||||||||||||||||||||||||||| ||||| ||| ||||||||||
Sbjct 818 AACCGGTCGTCTCACATCGAAAAGCGATGTGTGGGGTTACGGAGTTTTCATCTATGAGCT 877
Query 1231 TATCACTGGGAGGCGACCGGTGGACAGAAAC-AGACCCAAGGGAGAGCAGAAGCTTCTAG 1289
|| || || ||| |||| | ||| ||||| || || || |||||||||||||||||||
Sbjct 878 CATTACAGGAAGGAGACCACTAGACCGAAACAAG-CCTAAAGGAGAGCAGAAGCTTCTAG 936
Query 1290 AATGGGTGAGACCTTATTTATCTGACACAAGGAAGTTCAAG-CTCATATTAGATCCAAGG 1348
|||||||||||||||| ||||| |||||||||| |||| | |||||| |||| || |||
Sbjct 937 AATGGGTGAGACCTTACTTATCCGACACAAGGAGGTTCC-GTCTCATAGTAGACCCGAGG 995
Query 1349 CTGGAAGGGAAGTACCCGATCAAATCGGTTCA-AAAGCTAGCAGTTGTGGCCAACAGATG 1407
|| || ||||||||| |||||| | || || ||| || || |||||||||||| ||
Sbjct 996 CTCGAGGGGAAGTACATGATCAAGCCAGTGCAGAAA-CTCGCGGTTGTGGCCAACCTCTG 1054
Query 1408 T-TTGGTTAGGAACTCAAAGGCACGTCCCAAGATGAGTGAGGTTTTAGAGATGGTGAACA 1466
|| | |||||| ||||||| ||||| |||||||||||||| ||||||||||||| ||
Sbjct 1055 CCTTACT-AGGAACGCAAAGGCGCGTCCAAAGATGAGTGAGGTGTTAGAGATGGTGA-CA 1112
Query 1467 AA-ATTGTGGAAGCTTCTTCA---GGAAATGG---CA-GC--CCACAGCTAGTTCCGCTG 1516
|| |||||||||||||| || || ||||| || | || ||||| ||||||||
Sbjct 1113 AAGATTGTGGAAGCTTCATCGCCTGGGAATGGTGGCAAGAAACCGCAGCTGGTTCCGCTA 1172
Query 1517 AACAGTGTAA-AAGCTTCGAGAGACGCGAGA-GGAAAGAACAAT--GGTG---G-TGGCG 1568
|| ||| || ||||||| |||| || | || || ||||| || |||| | ||| |
Sbjct 1173 AAGAGTC-AAGAAGCTTCTAGAGTCGAG-GAAGGGAAGAATAAGAAGGTGCTTGATGGTG 1230
Query 1569 GTGAAGGAGGTTGGTTTGGCAAGTTATGGAATCCAAAGACAA-TAAGAGCTTGTTGA 1624
| |||||||||||||| | ||||| ||||| ||||||| | | ||||||||||||
Sbjct 1231 GCGAAGGAGGTTGGTTAGAAAAGTTGTGGAACCCAAAGA-ATGTGAGAGCTTGTTGA 1286
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71800111825
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5