BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G09850.1
Length=2641
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478310 jgi|Araly1|478310|fgenesh2_kg.3__1011__AT3G09850.1 3958 0.0
> Ahg478310 jgi|Araly1|478310|fgenesh2_kg.3__1011__AT3G09850.1
Length=2594
Score = 3958 bits (2143), Expect = 0.0
Identities = 2461/2613 (94%), Gaps = 27/2613 (1%)
Strand=Plus/Plus
Query 5 CCAGAAATGGCAAACACACTAATAAAGAAGATCTGTGATTCTTCCTTTCGATTCATCGTC 64
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1 CCAGAAATGGCAAACACACTAATAAAGAAGATCTGTGATTCTTCCTTTTGATTCATCGTC 60
Query 65 GTCTT-CCCCAAATTAGGGTTTTCTGGGAATTAGGTTGATTAAATTATGCGAGGCGGTGG 123
||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 61 GTCTTCCCCCAAATTAGGGTTTTCTGGGAATTAGGTTAATTAAATTATGCGAGGCGGTGG 120
Query 124 TAGGAGAAGGTCAAACGGTGGTGGTAGTTCTGGCAAAAACAAGGCTAAATCTCCAGGACA 183
||||||||| ||||||||||||||| |||||||||||| |||||||| ||||||||||||
Sbjct 121 TAGGAGAAGATCAAACGGTGGTGGTGGTTCTGGCAAAAGCAAGGCTAGATCTCCAGGACA 180
Query 184 GAGCACGAGAACCAATCATAATTCCGCGGCGGGGTCTTCCTCCGGTGGTCGTCACCGACG 243
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 181 GAGCACGAGAACCAATCATAATTCCGCGGCGGGGTCTTCCTCCGGTGGTCGTCGCCGACG 240
Query 244 TCAGAATAATACTACTTTGTTTGTTGAAGGAGGTATTCTCTCCGACTACCGAAAAGATCC 303
|||||||||||||||| ||||||| |||||||| ||||||||||| ||||||||||||||
Sbjct 241 TCAGAATAATACTACTCTGTTTGTCGAAGGAGGCATTCTCTCCGATTACCGAAAAGATCC 300
Query 304 TAACTTTTCGACGCCATCTCGTGGAGGAAGCTCTTCGGGAAAGGGATTGAGATCTAGAAG 363
||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||
Sbjct 301 GAACTTTTCGACGCCATCTCGTGGAGGAAGCTCTTCGGGAAAGGGATTGAAATATGGAAG 360
Query 364 CATAGAGCGTGTAAAAGCTTCTGCTTCCACGAGTGGTCCAAGGAAATGCAGTGGTAATAC 423
|| | | |||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 361 CACATATCGTGTAAAAGTTTCTGCTTCCATGAGTGGTCCAAGGAAATGCAGTGGTAATAC 420
Query 424 TTATGTGTATCAATATCCTTCCATTGATTTTGAGGAAGGTTTGGATCGAAGATCAGGAGT 483
|||||||||||| ||||||||||||||||||| | |||| || || |||| | |||| ||
Sbjct 421 TTATGTGTATCAGTATCCTTCCATTGATTTTGTGCAAGGGTTAGAGCGAAAAGCAGGCGT 480
Query 484 TGAAAGTGATCAAATGAAT-G--AAAGTCC-ACTGGTGTTGGGGAAGTCAGAGGCGACTC 539
|||||||||||||||| || | |||||| | | |||||||||||||||||||||||||
Sbjct 481 TGAAAGTGATCAAATGGATGGTTCAAGTCCTA-TTGTGTTGGGGAAGTCAGAGGCGACTC 539
Query 540 AAATTGTTGCATTTCTGGATCAAACGCCTTCGTCATCGAAAGGGATTAAGGTAAGTTATG 599
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 AAGTTGTTGCATTTCTGGATCAAACGCCTTCGTCATCGAAAGGGATTAAGGTAAGTTATG 599
Query 600 ATTACGAATACGAACCGAGTTACGTTTTGGGTGATGATTCTCATAAAGGATTGGGATTTT 659
||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 600 ATTACGAATACGAACCGAGTTTTGTTTTGGGTGATGATTCTCATAGAGGATTGGGATTTT 659
Query 660 GTGATGATTCTGATGCTACACCAAGTGGTAGCCTTTCTATTCCAAAGGCTTTGGGAGATC 719
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 660 GTGATGATTCTGATGCTACACCAAGTGGTAGCCTTTCTATTCCAAAGGCATTGGGAGATC 719
Query 720 AAGGTGGTTCATTTTCCCATGAGGAGGAGGGTGATGCTGTTGACGAATCTGGTGGAAATG 779
|||||||||||||||||| ||||||||| | |||||||||||| || |||||||||||||
Sbjct 720 AAGGTGGTTCATTTTCCCCTGAGGAGGAAGTTGATGCTGTTGAGGAGTCTGGTGGAAATG 779
Query 780 ACGATGAACTGATGCCTGATGTTGTGAAAACACCGAAAAGGAGGAATTCAGGTTTCATTT 839
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 ACGATGAAGTGATGCCTGATGTTGTGAAAACACCGAAAAGGAGGAATTCAGGTTTCATTT 839
Query 840 CTATAGGAGGGATGAAGTTGTACACtgaagatgtatctggtgaagagagtgatggagaag 899
||||||||||||||||||| |||||||||||| |||||||||||||||||||| | | ||
Sbjct 840 CTATAGGAGGGATGAAGTTATACACTGAAGATATATCTGGTGAAGAGAGTGAT-G-G-AG 896
Query 900 aagagatgaatgatgatgatgatgatgaatctggagatgaagGAAGCAGTGGATCTTCTG 959
|||| | | | |||| |||||||||||||||||||||||||| |||| | |||||||||
Sbjct 897 AAGA-A-G-A-GATG--GATGATGATGAATCTGGAGATGAAGGCAGCACTAGATCTTCTG 950
Query 960 AATTATCTGAGAGTGACAGCTCGGAAGATATGTTTGGAAGTTATTCCGAGATTGATGATG 1019
||| ||| |||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 951 AATCATCCGAGAGTGACAGCTCGGAAGACATGTTTGGAAGTAATTCCGAGATTGATGATG 1010
Query 1020 ATGTTGCCAAGGATTACTTGGAAGGTATTGGTGGCAGTGAGATTATGTTGGATGCTCATT 1079
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1011 CTGTTGCAAAGGATTACTTGGAAGGTATTGGTGGCAGTGAGATTATGTTGGATGCTCATT 1070
Query 1080 GGTTAGCAGAACAGTCTTTGGATAAATTAGATTTGTCGAGTGATGATAGTTCTTCAAGCG 1139
|||| ||||||||||| ||||||||||| |||||||| |||||||| ||||||||||| |
Sbjct 1071 GGTTGGCAGAACAGTCATTGGATAAATTGGATTTGTCAAGTGATGACAGTTCTTCAAGTG 1130
Query 1140 ATTCTTCGGATCGAAAAACGAGAAAGTTGACTGGTATTCGTCTGCAAAAAGCTTCAATGG 1199
||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1131 ATTCTTCTGATCGAAAAACGAGAAAGTTGACTGGTATTCGTCTGCGAAAAGCTTCAATGG 1190
Query 1200 AATATGGTAAGAAGAAGACAACAAGAAGTGGCTACTCGGGGCATGGTAAGTCTACTAATC 1259
||||||||||||||||||| ||||||||| | | ||||||||||||||||||||||||||
Sbjct 1191 AATATGGTAAGAAGAAGACGACAAGAAGTCGTTTCTCGGGGCATGGTAAGTCTACTAATC 1250
Query 1260 CATTGGCAATGGATGATCTTATGTTTGTGAAGGATCCAAGAAGTCTTTCGGGGAAGAAGA 1319
||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1251 CATTGACAATGGATGATCTTATGTTTGTGAAGGATCCAAGAAGTCTTTCAGGGAAGAAGA 1310
Query 1320 ATAAGAAGAAAGAGGTGGCTAAGTTTCCCCAGTCTTGGCCTTCACGGGCACCAAAGAGCA 1379
| ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1311 ACAAGAAGAAAGATGTGGCTAAGTTTCCCCAGTCTTGGCCTTCAGGGGCACCAAAGAGCA 1370
Query 1380 AGAATTCCCGTAGTTTTCCTGGTGAGAACAAGAAACACCGCAAAGAATACATTGCTTTGA 1439
|||||||||| | ||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 1371 AGAATTCCCGCAATTTTCCTGGTGAGAAGAAGAAACACCGCAAAGAATACATTGCTGTGA 1430
Query 1440 AGCGCCGTGAGAGAATGCTGCAGCGTGGTGTTGATCTTGCTGATATTAATTCTCAGTTAG 1499
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1431 AGCGCCGTGAGAGAATGCTGCAGCGTGGTGTTGATCTTGCTGATATTAACTCTCAATTAG 1490
Query 1500 AGAATTTTGTTCTGGAGAACGTGGACATGCACTGTTTCCAACGTATGCATAATCGAGATT 1559
||| ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 1491 AGAGGTTTGTTCTGGAGAACGTGGACATGCACTGTTTCCAGCGTATGCATAATAGAGATT 1550
Query 1560 GCTCTCAGGTAAGACGATTAGCAGATGTCTACCGCTTATCAAGTAGCTGCAATGGTTCTG 1619
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 1551 GCTCTCAGGTAAGACGATTAGCAGATGTATATCGCTTATCAAGTAGCTGCAATGGTTCTG 1610
Query 1620 GAAAGAAAAGCTTTGTGACGGTGACTCGAACATATCAGACATGTATGCCATCTGCCAGCG 1679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1611 GAAAGAAAAGCTTTGTGACGGTGACTCGAACATATCAGACATGTATGCCATCTGCCAGCG 1670
Query 1680 ATAAACTTCGCATTGAGAAGCTAATAGGAGCTGGAGATGAGGATTGTGATTTTGCTGTCA 1739
||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 1671 ATAAACTTCGCATTGAGAAGCTAATAGGAGCAGGAGATGAGGATTATGATTTTGCTGTCA 1730
Query 1740 GTGGAGGGGTAAAAGGGAAATCTGGAAGTTTAGATAGGAAAAAAGCAAAAGACTCAGCTA 1799
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||| || |
Sbjct 1731 GTGGAGGGGTAAAAGGGAAATCGGGAAGTTTAGATAGGAAGAAAGCAAAAGACTCCGCCA 1790
Query 1800 AAAAGCGACCTACTAGAGAGGAACGGGAGAGAAAC-AAAAGCAATGGGAAGAAGAGTTCT 1858
|||||||| |||||||||| ||||||||||||| | |||||||||||||||||||||| |
Sbjct 1791 AAAAGCGAACTACTAGAGAAGAACGGGAGAGAA-CTAAAAGCAATGGGAAGAAGAGTT-T 1848
Query 1859 -TATGCTGATCAACCTGTATCATTTGTGTCAAGTGGCATAATCGATTCTGAGATAGCTGT 1917
|||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||
Sbjct 1849 ATATGCTGATCAACCTGTATCGTTTGTTTCTAGTGGCATAATCGATTCTGAGATAGCTGT 1908
Query 1918 TGCAAAAACCTCAGTTGAAAAAGTTGCAAAAGAGGTAGCTGAAACTACTCCGGGAACCTC 1977
||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||||||
Sbjct 1909 TGCAAAAACCTCAGTTGAAAAAGATGCAAAACAGGTAGCTGAAACTACTCCAGGAACCTC 1968
Query 1978 TAATGGAGCAGACATTGGAGCATTTGAGGTACATACCAGAGGTTTTGGATCCAAAATGAT 2037
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1969 TAATGGAGCAGACATTGGAGCATTTGAGGTACATACTAGAGGCTTTGGATCCAAAATGAT 2028
Query 2038 GGCTAAAATGGGATTCATAGATGGAGGTGGTCTAGGAAAGGATGGTAAGGGGATAGCACA 2097
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2029 GGCGAAAATGGGATTCATAGATGGAGGCGGTCTAGGAAAGGATGGTAAGGGGATAGCACA 2088
Query 2098 GCCAATAGAAGCTGTTCAGCGTCCGAAATCACTTGGGTTAGGTCTGGATTTCTCCATTGA 2157
|||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 2089 GCCAATAGAAGCTGTTCAGCGTCCAAAATCACTTGGGTTAGGTCTGGATTTCAACATTGA 2148
Query 2158 CACTGAAGACCCGAGTCCGTCAAGTAATAACAATAACAACGCTAAACGGAACAGATCTTC 2217
|||||||||||||||||||||||| |||||||||||||||||| |||||||| ||
Sbjct 2149 CACTGAAGACCCGAGTCCGTCAAG------CAATAACAACGCTAAACGCAACAGATCGTC 2202
Query 2218 GTCCTCCGGGAAACATGGGAAACGCATCACCCATGACAATGGTGCCTCTGGTTCAGGAAG 2277
||||| |||||||||| |||||||| | ||||||| ||||||||||||||| ||||| |
Sbjct 2203 TTCCTCTGGGAAACATGTGAAACGCACCTCCCATGAAAATGGTGCCTCTGGTGCAGGAGG 2262
Query 2278 AATCAGGGACAAAAGATTGGGAGCCTTTGAGCAGCACACAACAGGCTTTGGGTCGAGGAT 2337
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2263 AATTAGAGACAAAAGATTGGGAGCCTTTGAGCAGCACACAACAGGCTTTGGGTCGAGGAT 2322
Query 2338 GATGGCGAGAATGGGTTTCGTCGAAGGCTCGGGTCTGGGTAGAGAGTCACAAGGCATAGT 2397
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 2323 GATGGCGAGAATGGGTTTCGTCGAAGGCTCGGGTTTGGGAAGAGAGTCACAAGGCATAGT 2382
Query 2398 CAATCCGCTGGTCGCTGTCAGACGTCCTAGAGCACGTGGAATAGGTGCTGAAGGCTAAAC 2457
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2383 CAATCCGCTGGTCGCTGTCAGACGTCCTAGAGCACGTGGAATAGGCGCTGAAGGCTAAAG 2442
Query 2458 ATTGAAGTATTTAACGGTCAATGTTTGAACAAGAACAGTAAGATATCGTTTTTAAGTATG 2517
||| ||||||||||| |||| |||||||||||||||||||||||| ||||| |||||||
Sbjct 2443 ATTTAAGTATTTAACACTCAAGGTTTGAACAAGAACAGTAAGATATTGTTTT-AAGTATG 2501
Query 2518 TTCATCTTCAATCTTCAACATGTGGCCTTTGTTCAATTTATGTTT-AAGACTTGGGAGCA 2576
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2502 TTCATCTTCAATCTTCAACATGTGGCCTTTGTTCAATTTATGTTTCAAGACTTGGGAGCA 2561
Query 2577 GCTTTGTTGTTATCTTGACATCAATGTTGTTGA 2609
|||||||||||||||||||||||||||||||||
Sbjct 2562 GCTTTGTTGTTATCTTGACATCAATGTTGTTGA 2594
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99605990675
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5