BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G09860.1

Length=616
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg928663 jgi|Araly1|928663|scaffold_301120.1                        547    3e-155


> Ahg928663 jgi|Araly1|928663|scaffold_301120.1
Length=340

 Score =  547 bits (296),  Expect = 3e-155
 Identities = 321/333 (96%), Gaps = 2/333 (1%)
 Strand=Plus/Plus

Query  67   GACGAGAGAGAGAGTGAAAATGGAGAAGTACTTTGGAAATGCGTACAGGGGAGATCCAGG  126
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  2    GACGAGAGAGAGAGTGAAAATGGAGAAGTACTTTGGAAATGCATACAGGGGAGATCCAGG  61

Query  127  AGTGCCACATGCAGATGCAGATCGTTTCGTGAATATATGGATTGGTTCTGCTGCTTTCTC  186
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  62   AGTGCCACATGCAGATGCAGATCGGTTCGTGAATATATGGATTGGTTCTGCTGCTTTCTC  121

Query  187  CGTTCTTACCTGGGTTAATCCTTACATGTGGCAGCTCTCTAACCAGTTCAATTACCATGA  246
             ||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct  122  TGTTCTCACCTGGGTCAATCCTTACATGTGGCAGCTCTCTAACCAGTTCAATTATCATGA  181

Query  247  CAAGTGGATGCTGTTTGAGCAGTACCACTGGAAAAAAGCAAGGGCAAAGAAGCAACCTTA  306
             ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  182  TAAGTGGATGCTGTTTGAGCAGTACCACTGGAAAAAAGCAAGGGCAAAGAAGCAGCCTTA  241

Query  307  TGAATTCAAGTGGAATAAGATACCCAAAGAAGTCAGGGACTCGTACTATTACAACTGGCC  366
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  242  TGAATTCAAGTGGAATAAGATACCTAAAGAAGTCAGGGACTCGTACTATTACAACTGGCC  301

Query  367  AGTCTACTTCCCATAGAAGTGTCTCTGTGTTGC  399
             |||||||||||||||||||||||  |||||||
Sbjct  302  TGTCTACTTCCCATAGAAGTGTCT--GTGTTGC  332



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22530643947


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5