BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G09870.1

Length=534
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg928664 jgi|Araly1|928664|scaffold_301121.1                        547    3e-155


> Ahg928664 jgi|Araly1|928664|scaffold_301121.1
Length=384

 Score =  547 bits (296),  Expect = 3e-155
 Identities = 345/369 (93%), Gaps = 2/369 (1%)
 Strand=Plus/Plus

Query  56   TTGAGAATGTGCAAAAAGTTTAAGATTTTCATGAGAAAGCTACAAATTTGCTGCTTATTC  115
            |||| |||| |||||||| | ||||| |||||||||||| |||||| |||||||||||||
Sbjct  17   TTGACAATGAGCAAAAAGCTGAAGATGTTCATGAGAAAGATACAAACTTGCTGCTTATTC  76

Query  116  ACTAGATTCTCTAAAAGGGTAGGGAATTATTGTGAGTTTGAGGAAGAGGGTAATGCTGCA  175
            ||||||||||| |||||||||||||||| | ||||||| ||||||||| ||||||||| |
Sbjct  77   ACTAGATTCTCCAAAAGGGTAGGGAATTGTGGTGAGTTCGAGGAAGAGTGTAATGCTGGA  136

Query  176  TCAATGATTCCAAGTGATGTGAAGGAAGGGCATGTAGCAGTGATTGCGGTTAAGGGAGAG  235
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  137  TCAATGATTCCAAGTGATGTGAAGGAAGGGCATGTAGCAGTGATTGCGGTTAAGGGAGAG  196

Query  236  AGAATTAAGAGGTTTGTTTTAGAGCTTGAAGAGTTGAACAAACCAGAGTTCTTGAGGCTG  295
            |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||
Sbjct  197  AGAATTAAGAGGTTTGTTTTGGAGCTTGAAGAGTTGAACAAACCTGAGTTCTTGAGGTTG  256

Query  296  CTCGAACA-AGCGAGAGAGGAATTCGGGTTTCAACCAAGAGGACCTCTGACCATCCCATG  354
            |||||||| | | | |||||| |||||||||||||| ||||||||||||||||| |||||
Sbjct  257  CTCGAACAGACCAA-AGAGGAGTTCGGGTTTCAACCGAGAGGACCTCTGACCATTCCATG  315

Query  355  CCAGCCGGAAGAAGTACAGAAGATTCTACAAGGAAGTAGAGAGTCTTGAATTTTGATTTG  414
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  316  CCAGCCGGAAGAAGTACAGAAGATTCTACAAGGAAGTAGAGAGTCTTGATTTTTGATTTG  375

Query  415  TAGAGCAAC  423
            |||||||||
Sbjct  376  TAGAGCAAC  384



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19459350390


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5