BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G09880.1
Length=2216
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478311 jgi|Araly1|478311|fgenesh2_kg.3__1012__AT3G09880.1 2926 0.0
Ahg487124 jgi|Araly1|487124|fgenesh2_kg.6__258__AT5G03470.1 1332 0.0
> Ahg478311 jgi|Araly1|478311|fgenesh2_kg.3__1012__AT3G09880.1
Length=2151
Score = 2926 bits (1584), Expect = 0.0
Identities = 1825/1938 (94%), Gaps = 30/1938 (2%)
Strand=Plus/Plus
Query 1 CTCTCTTTCTCGCTCTCTTCCTGATTTGATCACCGGAAAATCTTAGCCGTCCGATCAACC 60
|||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 1 CTCTCTTTCTCGCTCTCTTCCTGATTCGATCGCCGGAAAATCTTAGCCGTCCGATCAACC 60
Query 61 ACCGTGTACTCCGAGAAGATCTCTTCGATTACTTCAACGTTCTTCTGATTTTCACCAGCT 120
|||| ||||||||||||||||||||||||| ||||| | | ||||||||||| || ||
Sbjct 61 ACCGCATACTCCGAGAAGATCTCTTCGATTAGTTCAA--TGC-TCTGATTTTCATCACCT 117
Query 121 CAGATCTCCGACAACATTCCGGTATCATTTCTCGCttttttttCCTCCAAATCCTTATCC 180
|||||||||||||||||||||| | | |||||| | ||||| ||||||||||||||||
Sbjct 118 CAGATCTCCGACAACATTCCGG--T-A--TCTCGC-TCTTTTT-CTCCAAATCCTTATCC 170
Query 181 GCCAGATTACGAAAATGAGGAGCTTGATCCGAGAGAGGCATAGTGAAAGCTTATCTGTGA 240
| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 171 TCGGGATTACGAAAATGAGGAGCTTGATCCGAGAGAGGCATAGTGGAAGC-TATCTGTGA 229
Query 241 ATTCTTAGGATTTGAATCTGAATACTCAGGCTTTTTGATTCCTTCTCCGTTACATGCTGA 300
| |||||||||| |||||||||| |||||||||||||| | |||||||
Sbjct 230 AATCTTAGGATTCGAATCTGAATTCTCAGGCTTTTTGA----------G----ATGCTGA 275
Query 301 TTCAATTTTGAGCTCCCCTGCTAGTGTAAATCTCCTCAGCTCGGAAACTTAGGGTTTAGT 360
|||||||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 276 TTCAATTTTGAGCTCCTCTGTTAGTGTAAATCTCCTCAGCTCAGAAACTTAGGGTTTAGT 335
Query 361 TTGGGGTCCTTTGCTCTTCGTTGCGTAAGCCATGTTTAAGAAAATCATGAAAGGTGGGCA 420
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 336 TTGGGGTCCTTTGCTCTTAGTTGCGTAAGCTATGTTTAAGAAAATCATGAAAGGTGGGCA 395
Query 421 TCGAAAGCCCTCTAAATCCGAAGCTAATGAACCGTCTAGTTATGGGATTGGTCTACCTGA 480
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 396 TCGAAAGCCCTCTAAATCCGAAGCTAATGAACCTTCTAGTTATGGGATTGGTCTGCCTGA 455
Query 481 TAATAGGTCAGGTCCTGGCTCCAATGTGGTCGTTAGTCACGCTTCTCGTGGTGCATTGGT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 456 TAATAGGTCAGGTCCTGGCTCCAATGTGGTCGTTAGTCACGCTTCTCGTGGTGCATTGGT 515
Query 541 TAATTCTTCTCCGTCGCCAGTGACTGCAACTCCACCTCCTCCGCCTTTGGGCTCGGTGGA 600
||| || ||||||||||||||| ||||||||||||| ||||||||| ||||||| |||||
Sbjct 516 TAACTCGTCTCCGTCGCCAGTGGCTGCAACTCCACCACCTCCGCCTATGGGCTCCGTGGA 575
Query 601 GCCACTCCCGTTGTTTAGAGATGTGCCGGTTTCAGAGAGGCAAACTTTGTTCTTGAGGAA 660
| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 576 GGTACTCCCGTTGTTTAGAGATGTTCCGGTTTCAGAGAGGCAAACTTTGTTCTTGAGGAA 635
Query 661 ACTTCAGAATTGCTGTTTCCTTTTCGATTTCACTGACACGATTAAGAATGCTAGAGACAA 720
|||||| |||||||||||||| |||||||||||||||||||||||||| || ||||| ||
Sbjct 636 ACTTCAAAATTGCTGTTTCCTATTCGATTTCACTGACACGATTAAGAACGCGAGAGAGAA 695
Query 721 GGAGATTAAGAGGCAAACGTTGTTGGAGCTGGTGGATTTTATACAGTCTGGATCTAGTAA 780
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 696 GGAGATTAAGAGGCAAACGTTGCTGGAGCTGGTGGATTTTATACAGTCTGGATCTAGTAA 755
Query 781 GATCTCAGAGTCGTGTCAGGAAGAAATGATTAAGATGATTTCTGTTAATATTTTCCGGTC 840
| |||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 756 GGTCTCGGAATCGTGTCAGGAAGAAATGATTAAGATGATTTCTGTTAATATATTCCGGTC 815
Query 841 TCTCCCACCAGCATCACACGAGAATACGGGTCAAGAGCCTGCAGATCCTGAGGAAGAAGA 900
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 816 TCTCCCTCCAGCATCACACGAGAATACGGGTCAAGAGCCTGCAGATCCTGAGGAAGAGGA 875
Query 901 ACCTTATTTGGAACCTTCTTGGCCTCACTTACAGCTAGTTTACGAGTTGCTCCTGAGATA 960
||| ||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 876 ACCCTATTTAGAACCTTCTTGGCCTCATTTACAGCTAGTTTACGAGTTGCTACTGAGATA 935
Query 961 TGTTGTTTCGACTGACACTGATACAAAGGTGGCCAAACGGTATATCGACCATTCTTTTGT 1020
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 936 TGTTGTTTCGACCGACACGGATACAAAGGTGGCCAAACGGTATATCGACCATTCTTTTGT 995
Query 1021 GTTAAAGTTGCTCGATTTGTTTGATTCTGAGGACCCAAGAGAGAGGGAGTATTTGAAAAC 1080
|||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 996 GTTAAAGTTGCTTGATTTGTTTGATTCTGAGGATCCGAGAGAGAGGGAGTATTTGAAAAC 1055
Query 1081 GATTCTTCATAGGATATATGGGAAGTTTATGGTCCACAGACCCTTTATTAGGAAAGCAAT 1140
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1056 GATTCTTCATAGGATTTATGGGAAGTTTATGGTCCACAGACCCTTTATTAGGAAGGCAAT 1115
Query 1141 CAACAACATATTCTATAGGTTTATTTATGAGACAGAGAGACACAGTGGGATTGGGGAACT 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1116 CAACAACATATTCTATAGGTTTATTTATGAGACAGAGAGACACAGTGGGATTGGGGAACT 1175
Query 1201 CTTGGAGATTCTAGGCAGTATCATAAACGGGTTTGCATTGCCTATGAAGGAGGAACACAA 1260
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 1176 CTTGGAGATTCTAGGCAGTATCATAAACGGGTTTGCGTTGCCTATGAAGGAGGAGCACAA 1235
Query 1261 GCTATTCTTAATCAGGGTGTTGATACCATTGCATAAGCCAAAACCAATCGTTGTATATCA 1320
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1236 GCTATTCCTAATCAGGGTGTTGATACCATTGCATAAGCCAAAACCAATCGTTGTATATCA 1295
Query 1321 TCAGCAGTTATCTTATTGCATCGTTCAGTTTGTGGAAAAAGATTATAAGCTTGCGGATAC 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1296 TCAGCAGTTATCTTATTGCATCGTTCAGTTTGTGGAAAAAGATTATAAGCTTGCGGATAC 1355
Query 1381 AGTAATCAGGGGATTGTTAAAGTATTGGCCCGTGACAAACTGCTCAAAGGAGAATCTCTT 1440
|||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 1356 AGTAATCAGGGGGTTGTTAAAGTATTGGCCCGTGACAAACTGCGCAAAGGAAAATCTCTT 1415
Query 1441 CCTTGGAGAACTTGAAGAAGTTCTTGAGGCAACACAGCCTGTCGAGTTCCAGCGTTGCAT 1500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1416 CCTTGGAGAACTTGAAGAAGTTCTTGAGGCAACACAGCCTGTCGAGTTCCAGCGTTGCAT 1475
Query 1501 GGTTCCATTATTCCAACAAATTGGTCGCTGTCTCACTAGCTCCCACTTTCAGGTTGCAGA 1560
|||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1476 GGTTCCATTATTCCAACAGATTGGTCGCTGCCTCACTAGCTCTCACTTTCAGGTTGCAGA 1535
Query 1561 ACGAGCACTGTTCTTGTGGAACAACGAGCACATTGTGGGTCTAATCGCGCAAAACCGAAG 1620
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1536 ACGAGCACTGTTCTTGTGGAACAACGAGCACATTGTGGGTCTAATCGCACAGAACCGAAG 1595
Query 1621 CGTGATCCTTCCAATCATATATCCCA-CACTGGAGAAGAACATCCAGTCTCACTGGAACC 1679
|||||||||||||||||||| ||| || |||| |||||||| ||||||||||||||||
Sbjct 1596 TGTGATCCTTCCAATCATATA-CCCTGCATTGGAAAAGAACATACAGTCTCACTGGAACC 1654
Query 1680 AAGCAGTTCATGGTCTAACCACAAATATCAAGAAAATGTTCATGGAAATGGATCCTGAAC 1739
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1655 AAGCAGTCCATGGTCTAACCACAAATATCAAGAAAATGTTCATGGAAATGGATCCTGAGC 1714
Query 1740 TGTTTGAAGAATGTCAGAGACAGTATGAAGAGAAACAAGCGAAATCCAAAGAAGTAGAAG 1799
| ||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1715 TCTTTGAAGAATGCCAAAGACAGTATGAAGAGAAACAATTGAAATCCAAAGAAGTAGAAG 1774
Query 1800 AACAACGGCAATATACATGGAAGAGATTAGCAGAAGCAGCGGCGGAGCGAGATGGAGGAG 1859
|||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||
Sbjct 1775 AACAACGGCAATATACATGGAAGAGATTAGCAGAAGCAGCAGCGGAACGAGACGGAGGAG 1834
Query 1860 GAG--G-AGAAGAAGATCATATGATCACTTCCTAGATCGATCAAAAAGGGTATAATTCTT 1916
||| | |||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 1835 GAGAAGGAGAAGAAGATCATATGATCACTTCCTAGATCGATCAAAGAGGGTATTATTCTT 1894
Query 1917 TCACttttttttttGTTT 1934
||||||||||||||||||
Sbjct 1895 TCACTTTTTTTTTTGTTT 1912
Score = 313 bits (169), Expect = 4e-84
Identities = 205/221 (93%), Gaps = 8/221 (4%)
Strand=Plus/Plus
Query 1964 TTAATTTTCT-TATCAAACTTGGATTTGTTTGTTGTTTTGAGAATCATGGGTTCAAAATC 2022
|||||||||| | | ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1912 TTAATTTTCTCT-TGGAACTTGGATTTGTTTGTTGTTTTGAAAATCATGGGTTCAAAATC 1970
Query 2023 TGATTGCTCAGAGAAGT----AGAGAGAGAGAAGTGAGCCATTACTATCAGAGAATATGT 2078
||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 1971 TGATTGCTCAGAGAAGTAGAGAGAGAGAGAGAAGTGAGCTATTACTATCAGAGAATATGT 2030
Query 2079 CTTTAGTACTAAGAAATGTGTTTGTGATCTTCTGTCTAATTTTGTTCGTGGAAAGGCACT 2138
|| ||| | ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2031 CTGTAGCAGTAAGAAATGTGTTTGTGATCTTCTGTCTAATTTTGTTCGTGGAC-GGCACT 2089
Query 2139 TTAAAATTTTGTAAAAT-TTTAATTATATATACTGTGGATG 2178
||||||||||||||||| |||||||||||||||||||||||
Sbjct 2090 TTAAAATTTTGTAAAATGTTTAATTATATATACTGTGGATG 2130
> Ahg487124 jgi|Araly1|487124|fgenesh2_kg.6__258__AT5G03470.1
Length=1893
Score = 1332 bits (721), Expect = 0.0
Identities = 1234/1478 (83%), Gaps = 49/1478 (3%)
Strand=Plus/Plus
Query 382 TGCGTAAGCCATGTTTAAGAAAATCATGAAAGGTGGGC--ATCG-AAAGCCCTCTAAATC 438
||||||||||||||||||||| ||||||||| | |||| |||| |||| |||||||| |
Sbjct 292 TGCGTAAGCCATGTTTAAGAAGATCATGAAA-G-GGGCAAATCGAAAAG-CCTCTAAAGC 348
Query 439 CGAAGCTAATGAACCGTCTAGT-TATGGGATTGGTCTACCTGATAATAGGTCAGGTCCTG 497
|| || ||||| |||||| | |||||| ||| || ||| | ||||||||||||||
Sbjct 349 TGAGGCAAATGATTCGTCTA-TGTATGGGTTTGATCCACC--A-GGTAGGTCAGGTCCTG 404
Query 498 GCTCCAATGTGGTCGTTAGTCACGCTTCTCGTGG-T-GCATTGGTTAATTCTTCTCCGTC 555
| |||||| || | || | |||||| |||||||| | || || ||| |||||||||
Sbjct 405 GATCCAATATGATTGTAAATCACGCATCTCGTGGTTCGC-TT-GTTCCTTCTTCTCC-AG 461
Query 556 G-CCAGTGACTGCAACTC-CACCTCCTCCGCCTTTGGGCTCGGTGGAGCCACTCCCGTTG 613
| || || | || || | ||| || || ||| || || || ||||| || ||||||
Sbjct 462 GTTCAATGGCGGCCAC-CACACAACCGCCTCCTATGTATTCAGTCGAGCCTCTTCCGTTG 520
Query 614 TTTAGAGATGTGCCGGTTTCAGAGAGGCAAACTTTGTTCTTGAGGAAACTTCAGAATTGC 673
|| ||||| ||| | ||||| || | ||| ||||||||||||||||||| |||| |||
Sbjct 521 TTCAGAGACGTGTCTGTTTCCGACCGTCAATCTTTGTTCTTGAGGAAACTCCAGATTTGT 580
Query 674 TG-TTTCCTTTTCGATTTCACTGACACGATT-AAGAATGCTAGAGACAAGGAGATTAAGA 731
|| |||| ||| ||||| || || ||| || |||||||| ||||| |||||||||||||
Sbjct 581 TGTTTTCAATTT-GATTTTACGGATACG-TTGAAGAATGCGAGAGAGAAGGAGATTAAGA 638
Query 732 GGCAAACGTTGTTGGAGCTGGTGGATTTTATACAGTCTGGATCTA-GTAAGATCTCAG-A 789
|||||||||| |||||||| || |||||||||||||||||| | | | ||| |||| | |
Sbjct 639 GGCAAACGTTATTGGAGCTAGTTGATTTTATACAGTCTGGAGC-AGGGAAGCTCTCTGAA 697
Query 790 GTCGTGTCAGGAAGAAATGATTAAGATGATTTCTGTTAATATTTTCCGGTCTCTCCCACC 849
|| ||||| ||||||||| | ||||||||||| |||||||| ||||||| ||| || ||
Sbjct 698 GT-TTGTCAAGAAGAAATGGTAAAGATGATTTCGGTTAATATATTCCGGTGTCTTCCTCC 756
Query 850 AGCATCACACGAGAATACGGGTCAAGAGCCTGCAGATCCTGAGGAAGAAGAACCTTATTT 909
|| |||||||||||||| |||||||||||||| |||| ||||||||| || ||||||||
Sbjct 757 GGCTTCACACGAGAATACAGGTCAAGAGCCTGCTGATCTTGAGGAAGAGGAGCCTTATTT 816
Query 910 GGAACCTTCTTGGCCTCACTTACAGCTAGTTTACGAGTTGCTCCTGAGATATGTTGTTTC 969
|||||| ||||||||||| |||||||||||||| |||||| | |||||||| ||||| |
Sbjct 817 GGAACCATCTTGGCCTCATTTACAGCTAGTTTATGAGTTGTTGCTGAGATACATTGTTCC 876
Query 970 GACTGACACTGATACAAAGGTGGCCAAACGGTATATCGACCATTCTTTTGTGTTAAAGTT 1029
||||||| ||||||||||| || ||||||||||| ||||||||||||||||| | |||
Sbjct 877 TTCTGACACAGATACAAAGGTTGCGAAACGGTATATTGACCATTCTTTTGTGTTGAGGTT 936
Query 1030 GCTCGATTTGTTTGATTCTGAGGACCCAAGAGAGAGGGAGTATTTGAAAACGATTCTTCA 1089
||| || |||||||| |||| || |||||||| |||||||| |||||||||||||||||
Sbjct 937 GCTTGAATTGTTTGAGACTGAAGATCCAAGAGAAAGGGAGTACTTGAAAACGATTCTTCA 996
Query 1090 TAGGATATATGGGAAGTTTATGGTCCACAGACCCTTTATTAGGAAAGCAATCAACAACAT 1149
|||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||| ||
Sbjct 997 TAGGATTTATGGGAAGTTTATGGTCCACAGGCCCTTTATTAGGAAAGCAATGAACAATAT 1056
Query 1150 ATTCTATAGGTTTATTTATGAGACAGAGAGACACAGTGGGATTGGGGAACTCTTGGAGAT 1209
||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||
Sbjct 1057 ATTCTATAGGTTTATTTATGAGACAGAGAGACATAGTGGGATTGGGGAGCTTTTGGAGAT 1116
Query 1210 TCTAGGCAGTATCATAAACGGGTTTGCATTGCCTATGAAGGAGGAACACAAGCTATTCTT 1269
||| || ||||| ||||| |||||||| ||||| ||||||||||| |||||||| || ||
Sbjct 1117 TCTGGGTAGTATTATAAATGGGTTTGCCTTGCCAATGAAGGAGGAGCACAAGCTCTTTTT 1176
Query 1270 AATCAGGG-TGTTGATACCAT-TGCATAAGCCAAAACCAATCGTTGTATATCATCAGCAG 1327
||||||| | |||||||| | ||||||||||||||||||| | | | |||||||| ||
Sbjct 1177 GATCAGGGCT-TTGATACC-TCTGCATAAGCCAAAACCAATTGCTATGTATCATCAACAA 1234
Query 1328 TTATCTTATTGCATCGTTCAGTTTGTGGAAAAAGATTATAAGCTTGCGGATACAGTAATC 1387
|| ||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1235 TTGTCTTACTGCATTGTTCAGTTTGTGGAGAAAGATTATAAGCTTGCGGATACAGTAATT 1294
Query 1388 AGGGGATTGTTAAAGTATTGGCCCGTGACAAACTGCT-CAAAGGAGAATCTCTTCCTTGG 1446
||||| |||||||||| |||||| ||||||||||| | |||| ||| |||||| || ||
Sbjct 1295 AGGGGGTTGTTAAAGTTTTGGCCTGTGACAAACTG-TACAAAAGAGGTTCTCTTTCTCGG 1353
Query 1447 AGAACTTGAAGAAGTTCTTGAGGCAACACAGCCTGTCGAGTTCCAGCGTTGCATGGTTCC 1506
||||||||||||||||||||||||||||| |||| |||||||| || || ||||| ||
Sbjct 1354 TGAACTTGAAGAAGTTCTTGAGGCAACACAAACTGTTGAGTTCCAACGCTGTATGGTCCC 1413
Query 1507 AT-TATTCCAACAAATTGGTCGCTGTCTCA-CTAGCTCCCACTTTCAGGTTGCAGAACGA 1564
| | |||||||| |||| ||| || |||| | ||||| | ||||||||||||||||||
Sbjct 1414 -TCTGTTCCAACAGATTGCTCGGTGCCTCAGC-AGCTCTAATTTTCAGGTTGCAGAACGA 1471
Query 1565 GCACTGTTCTTGTGGAACAACGAGCACATTGTGGGTCTAATCGCGCAAAACCGAAGCGTG 1624
|| ||||||||||||||||| |||||| |||| |||||||| ||||| |||||| | |||
Sbjct 1472 GCTCTGTTCTTGTGGAACAATGAGCACGTTGTAGGTCTAATAGCGCAGAACCGAGGTGTG 1531
Query 1625 ATCCTTCCAATCATATATCCCA-CACTGGAGAAGAA-CATCCAGTCTCACTGGAACCAAG 1682
|||||||| ||||||| | | | | ||||||| ||| ||| ||||||||||||||||||
Sbjct 1532 ATCCTTCCCATCATATTTGC-ATCCCTGGAGA-GAAACATAGAGTCTCACTGGAACCAAG 1589
Query 1683 CAGTTCATGGTCTAACCACAAATATCAAGAA-AATGTTCATGGAAATGGATCCTGAACTG 1741
| || || ||| ||| | | ||||| || || |||||||||||| ||||| ||||| ||
Sbjct 1590 CTGTACACGGTTTAAGCGCGAATATAAA-AAGAATGTTCATGGAGATGGACCCTGAGCTC 1648
Query 1742 TTTGAAGAATGTCAG-AGACAGTATGAAGAGAAACAAGCGAAATCCAAAGAAGTAGAAGA 1800
|||||||| || ||| | |||||| |||||||||||||| ||||| ||| |||| |||||
Sbjct 1649 TTTGAAGATTGCCAGCA-ACAGTACGAAGAGAAACAAGCCAAATCGAAACAAGTGGAAGA 1707
Query 1801 ACAACGGCAATA-TACATGGAAGAGATTAGCA-GAAGC 1836
|||||| ||| | || |||| |||||||| | |||||
Sbjct 1708 ACAACGCCAA-AGTAGGTGGAGGAGATTAG-ATGAAGC 1743
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83417636550
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5