BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G09900.1
Length=1001
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478314 jgi|Araly1|478314|fgenesh2_kg.3__1015__AT3G09900.1 1327 0.0
Ahg487128 jgi|Araly1|487128|fgenesh2_kg.6__262__AT5G03520.2 789 0.0
> Ahg478314 jgi|Araly1|478314|fgenesh2_kg.3__1015__AT3G09900.1
Length=857
Score = 1327 bits (718), Expect = 0.0
Identities = 819/866 (95%), Gaps = 14/866 (2%)
Strand=Plus/Plus
Query 29 TCTCCGGCGAGAAGAGATTTTCCGGGGGAAAATAGCAAAAG--CTCGGTTTTAGTTTCTG 86
||||||||||||||||||||||| ||||||||||||| || |||||||||||||| ||
Sbjct 1 TCTCCGGCGAGAAGAGATTTTCC-GGGGAAAATAGCATGAGCTCTCGGTTTTAGTTTGTG 59
Query 87 TTTAGAAAGAGGATACAGAATAGTGATTACTAACATCTTCTCCGATGGCGGTTGCGCCGG 146
|||||||||||| || | || | ||| ||||||| |||||||||||||||||
Sbjct 60 TTTAGAAAGAGG--AC-G--TA--G----CTATTATCTTCTGTGATGGCGGTTGCGCCGG 108
Query 147 CAAGAGCTCGTTCAGACTATGATTATCTCATCAAGCTTCTCCTCATCGGTGATAGCGGTG 206
||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||
Sbjct 109 CAAGAGCTCGTTCAGACTATGATTACCTCATCAAGCTCCTCCTCATCGGCGATAGCGGTG 168
Query 207 TGGGAAAAAGTTGCTTGTTACTGCGTTTTTCGGATGATACTTTCACCACGAGTTTCATTA 266
|||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||
Sbjct 169 TGGGAAAAAGTTGCTTGTTACTGCGTTTCTCAGATGATACTTTTACCACGAGTTTCATTA 228
Query 267 CTACCATTGGAATCGACTTCAAGATAAGAACAGTCGAACTTGATGGGAAGCGTATCAAAT 326
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 229 CTACCATTGGAATCGATTTCAAGATAAGAACAGTCGAACTTGATGGCAAGCGTATCAAAT 288
Query 327 TGCAGATATGGGACACTGCTGGACAAGAACGTTTTAGAACTATAACCACAGCATATTACA 386
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 289 TGCAGATTTGGGACACTGCTGGACAAGAACGTTTTAGAACTATAACTACAGCATATTACA 348
Query 387 GAGGAGCGATGGGTATATTACTCGTCTATGATGTAACAGATGAGTCATCATTCAACAACA 446
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 349 GAGGAGCTATGGGTATATTACTCGTCTATGATGTAACAGATGAGTCATCTTTCAACAACA 408
Query 447 TTAGGAACTGGATGAAAAACATTGAGCAGCATGCGTCCGATAGTGTCAACAAGATATTGG 506
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 409 TTAGGAACTGGATGAAAAACATTGAGCAGCATGCGTCCGATAGTGTCAACAAAATATTGG 468
Query 507 TCGGTAACAAAGCCGACATGGACGAAAGCAAAAGGGCTGTCCCAACATCAAAAGGACAAG 566
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 469 TTGGTAACAAAGCCGACATGGACGAAAGCAAAAGGGCTGTCCCAACATCAAAGGGACAAG 528
Query 567 CTCTTGCTGATGAGTATGGAATCAAATTCTTTGAGACGAGTGCAAAAACAAACCAGAATG 626
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 529 CTCTCGCTGATGAGTATGGAATCAAATTCTTTGAAACGAGTGCAAAAACAAACCAGAATG 588
Query 627 TCGAGCAGGTTTTCCTTTCTATCGCTAAAGACATAAAACAAAGACTCACAGAAAGCGATA 686
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 589 TCGAGCAGGTTTTCCTTTCTATCGCAAAAGACATAAAACAAAGGCTCACAGAAAGCGATA 648
Query 687 CAAAAGCCGAGCCCCAAGGGATCAAGATCACTAAACAAGATGCTAACAAAGCCTCATCGT 746
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 649 CAAAAGCCGAGCCCCAAGGGATCAAGATCACCAAACAAGATGCTAACAAAGCCTCATCGT 708
Query 747 CTTCTACAAATGAGAAATCAGCTTGCTGCAGTTATGTTTAGAAGTTCTCTGAACCTGTTT 806
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 709 CTTCTACAACTGAGAAATCAGCTTGCTGCAGTTATGTTTAGAAGTTCTCTGGACCTGTTT 768
Query 807 CTAATCTCTTACCGTCTTTAATCTTCTTCGCATCATTCAAGGGATCGTCCTATGTTCTTA 866
||||||| |||||||| |||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 769 CTAATCTTTTACCGTCGTTAATCTTATTCGCATCATTCAAGAGATCGTCCTATGTTCTTA 828
Query 867 TTAGTAGGAGGATAGACTTAATTGAT 892
||||||||||||||||||||||||||
Sbjct 829 TTAGTAGGAGGATAGACTTAATTGAT 854
> Ahg487128 jgi|Araly1|487128|fgenesh2_kg.6__262__AT5G03520.2
Length=1117
Score = 789 bits (427), Expect = 0.0
Identities = 596/677 (88%), Gaps = 14/677 (2%)
Strand=Plus/Plus
Query 122 TCTTCTC--CGATGGCGGTTGCGCCGGCAAGAGCTCGTTCAGACTATGATTATCTCATCA 179
||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 189 TCTTCTCTGCGATGGCGGTTGCGCCGGCAAGAGCTCGTTCAGACTATGATTACCTCATCA 248
Query 180 AGCTTCTCCTCATCGGTGATAGCGGTGTGGGAAAAAGTTGCTTGTTACTGCGTTTTTCGG 239
||||||| |||||||| |||||||||||||| || ||||| |||||||| || || || |
Sbjct 249 AGCTTCTTCTCATCGGCGATAGCGGTGTGGGGAAGAGTTGTTTGTTACTTCGATTCTCTG 308
Query 240 ATGATACTTTCACCACGAGTTTCATTACTACCATT-GG---AATCGACTTCAAGATAAGA 295
||||||||||||| || |||||||||||||||||| || ||| |||||||||||||||
Sbjct 309 ATGATACTTTCACTACAAGTTTCATTACTACCATTGGGTATAATTGACTTCAAGATAAGA 368
Query 296 ACAGTCGAACTTGATGGGAAGCGTATCAAATTGCAGATATGGGACACTGCTGGACAAGAA 355
|| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 369 ACTGTTGAACTTGATGGGAAGCGTATCAAATTGCAGATATGGGACACTGCTGGTCAAGAA 428
Query 356 CGTTTTAGAACTATAACCACAGCATATTACAGAGGAGCGATGGGTATATTACTCGTCTAT 415
||||| |||||||| || ||||| |||||||| ||||||||||||||||| || |||||
Sbjct 429 CGTTTCAGAACTATTACTACAGCGTATTACAGGGGAGCGATGGGTATATTGCTTGTCTAC 488
Query 416 GATGTAACAGATGAGTCATCATTCAACAACATTAGGAACTGGATGAAAAACATTGAGCAG 475
|||||||| |||||||| || |||||||| ||||||||||||||||| ||||| |||||
Sbjct 489 GATGTAACGGATGAGTCGTCTTTCAACAATATTAGGAACTGGATGAAGAACATCGAGCAA 548
Query 476 CATGCGTCCGATAGTGTCAACAAGATATTGGTCGGTAACAAAGCCGACATGGACGAAAGC 535
||||| || |||| ||||||||| |||||||| ||||||||||| || ||||| ||||||
Sbjct 549 CATGCCTCAGATAATGTCAACAAAATATTGGTTGGTAACAAAGCTGATATGGATGAAAGC 608
Query 536 AAAAGGGCTGTCCCAACATCAAAAGGACAAGCTCTTG-CTGATGAGTATGGAATCAAATT 594
||||||||||| |||||| |||| || |||||| ||| ||||||||||||||||||||||
Sbjct 609 AAAAGGGCTGTTCCAACAGCAAAGGGCCAAGCT-TTGGCTGATGAGTATGGAATCAAATT 667
Query 595 CTTTGAGACGAGTGCAAAAACAAACCAGAATGTCGAGCAGGTTTTCCTTTCTATCGCTAA 654
||||||||||||||| |||||||||| |||||||| | ||||||||||| ||||| ||
Sbjct 668 CTTTGAGACGAGTGCCAAAACAAACCTCAATGTCGAAAATGTTTTCCTTTCAATCGCAAA 727
Query 655 AGACATAAAACAAAGACTCACAGAAAGCGATACAAAAGCCGAGCCCCAAGGGATCAAGAT 714
|||||||||||||||| | ||||||| |||||||||||| ||||||||||| ||||||||
Sbjct 728 AGACATAAAACAAAGATTGACAGAAACCGATACAAAAGCAGAGCCCCAAGGCATCAAGAT 787
Query 715 CACTAAACAAGATGCTAACAAAGCCTCATCGTCTTCTACAAATGAGAAATCAGCTTGCTG 774
||| ||||||||| || |||||||| |||||| || ||||| |||||||||||
Sbjct 788 CACCAAACAAGATACT------GCCTCATCATCTTCTGCAGCCGAGAAGTCAGCTTGCTG 841
Query 775 CAGTTATGTTTAGAAGT 791
||||| |||||| |||
Sbjct 842 TAGTTACGTTTAGGAGT 858
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37207966992
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5