BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G09910.1
Length=1076
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478315 jgi|Araly1|478315|fgenesh2_kg.3__1016__AT3G09910.1 1230 0.0
Ahg892263 jgi|Araly1|892263|Al_scaffold_0006_259 580 5e-165
> Ahg478315 jgi|Araly1|478315|fgenesh2_kg.3__1016__AT3G09910.1
Length=996
Score = 1230 bits (666), Expect = 0.0
Identities = 742/778 (95%), Gaps = 8/778 (1%)
Strand=Plus/Plus
Query 285 TAGAGTGAGAGATTGTAGAAGAAAATGGGATCTTCTTCTGGGCAAAGTGGGTATGATCTA 344
|||||||||||||||| || |||||||||||||||||||||||||||| |||||||||
Sbjct 225 TAGAGTGAGAGATTGT---AG-AAATGGGATCTTCTTCTGGGCAAAGTGGTTATGATCTA 280
Query 345 TCTTTCAAGATCTTGTTGATTGGAGATTCTGGTGTTGGTAAAAGCAGCTTGCTTCTCAGC 404
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 281 TCTTTTAAGATCTTGTTGATTGGAGATTCTGGTGTTGGTAAAAGTAGCTTGCTTCTCAGC 340
Query 405 TTCATTTCCAGCTCTGTCGAAGATCTTGCTCCCACCATTGGTGTTGACTTTAAGATCAAA 464
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 341 TTCATTTCTAGCTCTGTCGAAGATCTTGCTCCCACCATTGGTGTTGATTTTAAGATCAAA 400
Query 465 CAGATGAAAGTAAGAGGGAAAAGGCTGAAACTTACAATCTGGGACACAGCTGGACAAGAA 524
||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 401 CAGATGAAAGTGAGAGGGAAAAGACTAAAACTTACAATCTGGGACACAGCTGGACAAGAA 460
Query 525 AAGTTCAGAACATTGACAAGTTCTTATTTCAGAGGCTCCCAAGGAATCATTCTCGTTTAT 584
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 461 AAGTTCAGAACATTGACAAGTTCTTATTTCAGGGGCTCCCAAGGAATCATTCTCGTTTAT 520
Query 585 GATGTCACGAAAAGAGAGACATTTTTGAACTTGGCAGATATTTGGGCTAAAGAGATTGAG 644
||||| ||||||||||| |||||| |||||||||||||| ||||||||||||||||||||
Sbjct 521 GATGTGACGAAAAGAGACACATTTATGAACTTGGCAGATGTTTGGGCTAAAGAGATTGAG 580
Query 645 CTATATTCGACTAACCATGACTGCATTAAGATGCTCGTTGGCAACAAAGTTGATAGAGAA 704
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 581 CTATATTCGACTAACCATGACTGCATTAAGATGCTTGTTGGCAACAAAGTTGATAGAGAA 640
Query 705 TCAGAAAGGAAGGTTAGCCGGGAAGAAGGAATGGCTCTAGCGAAAGACCTCAATTGTTTG 764
|| || ||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||
Sbjct 641 TCTGAGAGGAAGGTTAGCCGGGAAGAAGGAATGACTCTAGCGAAAGAACTCAAGTGTTTG 700
Query 765 TTTCATGAATGTAGCGCAAGAACCCGAGAAAACGTGAAC-GGATGCTTCGAAGAGCTAGC 823
|||||||||||||||||||||||| |||||||||||||| || |||||||||||||| ||
Sbjct 701 TTTCATGAATGTAGCGCAAGAACCAGAGAAAACGTGAACTGG-TGCTTCGAAGAGCTTGC 759
Query 824 TTTGAAGATAATGGAGGTACCTAGTCTTTTGGAAGAAGGATCAAGCTCTGTGAAGAGAAA 883
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 760 TTTGAAGATAATGGAGGTACCTAGTCTTTTGGAAGAAGGATCAAGCTCTGTGAAGAGAAA 819
Query 884 ACCGGATTACCGAGCTCATCAAGGCCGGTGTTGCAGCTCGTGAGTCACCTTGTTAAAATC 943
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 820 ACCGGATTACCGATCTCATCAAGGCCGGTGTTGCAGCTCGTGAGTCACCTTGTTAAACCC 879
Query 944 GGGTCGGAAGTAGCCTCTTTTGTGTGTAAATTTCTCAAGAAGCTT-GACTTCTCTGTAAA 1002
||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||
Sbjct 880 GGGTCGGAAGTAGCCTCTTTTGTGTGTAAATTTCTCAAGCAGCTTAG-CTTCTCTGTAAA 938
Query 1003 TTTATCAATTCCTTCGATCTTTCTTCTTCTTGCCTCGGCGGAGATTTTGTAATAAGTT 1060
|||||||||||||| |||||||||||||||||||||||| |||||| |||||||||||
Sbjct 939 TTTATCAATTCCTTGGATCTTTCTTCTTCTTGCCTCGGCTGAGATTGTGTAATAAGTT 996
Score = 124 bits (67), Expect = 1e-27
Identities = 89/98 (91%), Gaps = 8/98 (8%)
Strand=Plus/Plus
Query 59 TATTTGTTCAACAATTCTCATTAA-CGTTTTTCATTATTTGTTTTCTGCTCTGTAAAGAA 117
||||||||| | |||||| | ||| |||||||||||| || |||||||||||||||||||
Sbjct 31 TATTTGTTC-A-AATTCT-AGTAAGCGTTTTTCATTA-TT-TTTTCTGCTCTGTAAAGAA 85
Query 118 TAAAGTTTCTTAATTT-GTT-GTATGAATCATAGATTT 153
|||||||||||||||| ||| |||||||||||||||||
Sbjct 86 TAAAGTTTCTTAATTTTGTTTGTATGAATCATAGATTT 123
> Ahg892263 jgi|Araly1|892263|Al_scaffold_0006_259
Length=633
Score = 580 bits (314), Expect = 5e-165
Identities = 497/584 (85%), Gaps = 18/584 (3%)
Strand=Plus/Plus
Query 309 ATGGGATCTTCTTCTGGGCAAAGTGGGTATGATCTATCTTTCAAGATCTTGTTGATTGGA 368
|||||||||||||||||||||||||| || ||||| ||||| |||||||||||||||||
Sbjct 1 ATGGGATCTTCTTCTGGGCAAAGTGGATACGATCTGTCTTTTAAGATCTTGTTGATTGGT 60
Query 369 GATTCTGGTGTTGGTAAAAGCAGCTTGCTTCTCAGCTTCATTTCCAGCTCTGTCGAAGAT 428
||||||||||||||||||||||| |||||| | ||||||||||||||||| || ||||||
Sbjct 61 GATTCTGGTGTTGGTAAAAGCAGTTTGCTTGTGAGCTTCATTTCCAGCTCCGTTGAAGAT 120
Query 429 CTTGCTCCCACCATTGGTGTTGACTTT-AAGATCAAACAGA-TGAAAGTAAGAGGGAAAA 486
|||||||| |||||||||||||| ||| ||||||||||| | ||| |||| |||| ||||
Sbjct 121 CTTGCTCCTACCATTGGTGTTGA-TTTCAAGATCAAACA-ATTGACAGTAGGAGGCAAAA 178
Query 487 GGCTGAAACTTACAATCTGGGACACAGCTGGACAAGAAAAGTTCAGAACATTGACAAGTT 546
| || ||||| ||||||||||||||||||||||| ||| ||| |||||| |||| || |
Sbjct 179 GACTAAAACTCACAATCTGGGACACAGCTGGACAGGAACGGTTTAGAACACTGACGAGCT 238
Query 547 CTTA-TTTCAGAGGCTCCCAAGGAATCATTCTCGTTTATGATGTCACGAAAAGAGAGACA 605
|||| | | |||||| |||||||||||||||| ||||||||||| |||| ||| ||||||
Sbjct 239 CTTACTAT-AGAGGCGCCCAAGGAATCATTCTTGTTTATGATGTGACGAGAAGGGAGACA 297
Query 606 TTTTTGAACTTGGCAGATATTTGGGCTAAAGAGATTGAGCTATATTCGACTAACCATGAC 665
||| ||||| | |||| | |||| ||| ||||||||||| ||||| || ||||| ||
Sbjct 298 TTTACAAACTTAGTAGATGTGTGGGGTAAGGAGATTGAGCTTTATTCCACAAACCAAGAA 357
Query 666 TGCAT-TAA-GATGCTCGTTGGCAACAAAGTTGATAGAGAATC--AGAAAGGAAGGTTAG 721
|| | ||| |||||||||||| |||||||| ||||||||||| ||| ||| | || ||
Sbjct 358 TG--TGTAAGGATGCTCGTTGGGAACAAAGTCGATAGAGAATCTGAGAGAGG-A-GTAAG 413
Query 722 CCGGGAAGAAGGAATGGCTCTAGCGAAAGACCTCAATTGTTTGTTTCATGAATGTAGCGC 781
| | |||||||| || ||| |||| ||||| ||||| || |||||| ||| ||||| ||
Sbjct 414 CAGAGAAGAAGGGATTGCTTTAGCAAAAGAACTCAACTGCATGTTTCTTGAGTGTAGTGC 473
Query 782 AAGAACCCGAGAAAACGT-GAACGGATGCTTCGAAGAGCTAGCTTTGAAGATAATGGAGG 840
||||| ||| ||||||| |||| | || ||||||||| | |||||||||||||||||||
Sbjct 474 TAGAACTCGACAAAACGTGGAACAG-TGTTTCGAAGAGTTGGCTTTGAAGATAATGGAGG 532
Query 841 TACCTAGTCTTTTGGAAGAAGGATCAAGCT-CTGTGAAGAGAAA 883
|||||||||| ||||||||||||||||| | |||||||||||||
Sbjct 533 TACCTAGTCTCTTGGAAGAAGGATCAAG-TGCTGTGAAGAGAAA 575
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40067185767
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5