BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G09915.1
Length=1172
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478316 jgi|Araly1|478316|fgenesh2_kg.3__1017__AT3G09915.1 619 1e-176
Ahg928670 jgi|Araly1|928670|scaffold_301127.1 501 5e-141
Ahg317684 jgi|Araly1|317684|fgenesh1_pm.C_scaffold_3000700 267 2e-70
Ahg937812 jgi|Araly1|937812|scaffold_502003.1 233 2e-60
Ahg330600 jgi|Araly1|330600|fgenesh1_pm.C_scaffold_7002827 198 7e-50
Ahg929436 jgi|Araly1|929436|scaffold_301893.1 150 2e-35
Ahg928652 jgi|Araly1|928652|scaffold_301109.1 91.6 1e-17
Ahg492252 jgi|Araly1|492252|fgenesh2_kg.7__1685__AT4G25710.1 84.2 2e-15
Ahg315222 jgi|Araly1|315222|fgenesh1_pm.C_scaffold_2000255 71.3 2e-11
> Ahg478316 jgi|Araly1|478316|fgenesh2_kg.3__1017__AT3G09915.1
Length=921
Score = 619 bits (335), Expect = 1e-176
Identities = 548/643 (85%), Gaps = 45/643 (7%)
Strand=Plus/Plus
Query 573 GCGTCCTTGGTGAAAAGATATATGTAGCAGGATGTTACAGCGATATGCATTTAGGTTCTT 632
||||||||||| ||||||||||||||||||||||||||| |||||| ||||||| |||||
Sbjct 278 GCGTCCTTGGTCAAAAGATATATGTAGCAGGATGTTACAACGATATACATTTAGATTCTT 337
Query 633 CTTTCTTTGAGGTGTTCGACACGAAAACGGAAGTTTGGGTTAGTGAG------CC---CA 683
|||||||||||||||||||||| ||||| ||||||||||||||||| || ||
Sbjct 338 CTTTCTTTGAGGTGTTCGACACAAAAACAAAAGTTTGGGTTAGTGAGCCCATCCCTTGCA 397
Query 684 TCCCTTACAGCGACAGAAAATACAACTTTCTTCACCCCAAAAGCATTTGTATTGATGGAA 743
||||||||||||| ||| ||| ||||||||||||| |||||||||||||||||||| ||
Sbjct 398 TCCCTTACAGCGAGAGAGAATTCAACTTTCTTCACTCCAAAAGCATTTGTATTGATAAAA 457
Query 744 AGATCCATGTAGTGACTGACAGTGAGGGGGTTGTTGCTTACAATCCCAAGGAA-G--G-T 799
|||||||||| |||||||||||||||||||| ||||||||| || |||||||| | | |
Sbjct 458 AGATCCATGTGGTGACTGACAGTGAGGGGGTGGTTGCTTACGATGCCAAGGAAGGTAGAT 517
Query 800 ---A------T--A-T--GGTTGGATTTGGATCAGTATATGCGTTCAGATTCTTATTGTG 845
| | | | ||||||||||||||||| |||||||||||||||||||||| |
Sbjct 518 GGGACCTGGTTGGACTACGGTTGGATTTGGATCAGCATATGCGTTCAGATTCTTATTGCG 577
Query 846 AGATAGATG-ATATTTTGTACTCTGTTTATAGCAGAACGGTTATATGGTATGACACTGAG 904
||| || | || |||||||||||||||||| ||||| ||| ||||||||||||||||||
Sbjct 578 TGATGGA-GAATGTTTTGTACTCTGTTTATAACAGAATGGTCATATGGTATGACACTGAG 636
Query 905 GCAAGCAGGTGGAGATATTTGGAGGGCTT---AGGACAACTTACGTTTCCTCTTGGTGCT 961
||||||||||||||||||||||||||||| ||||| || ||||||||||||||||| |
Sbjct 637 GCAAGCAGGTGGAGATATTTGGAGGGCTTGGCAGGACTACCTACGTTTCCTCTTGGTGGT 696
Query 962 TCTATTAG---GGCT--T-A-GG---AAAGTTAGCGGTTTTGTGGGACGAGGATTTGCTT 1011
||| |||| || | | | || |||||||| |||||||||||| ||||||||||||
Sbjct 697 TCTGTTAGATTGGGTGATTATGGTGGAAAGTTAGTGGTTTTGTGGGAAGAGGATTTGCTT 756
Query 1012 TATGGTTTGACTAGTTTCGTCTATAAGAAGAAGATTTGGTGTGCGGAGATTTCGCTTGAA 1071
||| ||||| ||||||||||| ||||||| ||||| |||||||| |||||| ||||| ||
Sbjct 757 TATTGTTTGTCTAGTTTCGTCCATAAGAATAAGATATGGTGTGCCGAGATTGCGCTTCAA 816
Query 1072 AGAAGCAAAAGTTGCGAAAGTTT-TGGGAA-GTTGAATGGTTTGATCATGTGCTTACAGT 1129
||| |||||||| | |||| ||| |||||| ||||| ||||| ||||||||||||||| |
Sbjct 817 AGACGCAAAAGTGGTGAAA-TTTATGGGAAAGTTGAGTGGTTAGATCATGTGCTTACAAT 875
Query 1130 GCCTAAAGAATGTGAATTGGTGAAAGTTCTTGCTGCTACTGTT 1172
|||||||||| ||| |||||||| ||||||||||||||||||
Sbjct 876 CCCTAAAGAATATGATTTGGTGAAGGTTCTTGCTGCTACTGTT 918
Score = 433 bits (234), Expect = 2e-120
Identities = 261/274 (95%), Gaps = 2/274 (1%)
Strand=Plus/Plus
Query 236 TGTCTCTATGTGTGCTTACGGTGCTGTCCTGGTTATCGCTGGTTCACCCTGTGTCGGAAG 295
||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 1 TGTCTCTATGTGTGCTTACGGTGCTTTCCTGGTTATCGCTGGTTCACCCTCTGTCGGAAG 60
Query 296 CCAGATCAAACCCTATCCAATGACACCACTGAA-AAGAAGTCAAGTGGGTATGTTTTGGC 354
|| |||||||||||| |||||||||||||| || |||||| |||||||||||||||||||
Sbjct 61 CCTGATCAAACCCTAACCAATGACACCACT-AAGAAGAAGCCAAGTGGGTATGTTTTGGC 119
Query 355 AACAGTCCCCATTCCTAGTTTTCATAAACCGCGCTTTTCGAGTCTCGTGGTGGTTGGTTC 414
| ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 120 ACCAGTCCCGATTCCTAGTTTTCATAAACCGCACTTTTCGAGTCTCGTGGTGGTTGGTTC 179
Query 415 TGATATCTACTACATCCACGGGCCCTCCTCTAACGTCTCGATTCTGGATTGCCGGTCTCA 474
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TGATATCTACAACATCCACGGGCCCTCCTCTAACGTCTCGATTCTGGATTGCCGGTCTCA 239
Query 475 CACGTGGCGCCAGGTTCAAAGCTCGATTCTAGAT 508
|||||||||| |||||||||||| ||||||||||
Sbjct 240 CACGTGGCGCAAGGTTCAAAGCTTGATTCTAGAT 273
> Ahg928670 jgi|Araly1|928670|scaffold_301127.1
Length=1230
Score = 501 bits (271), Expect = 5e-141
Identities = 427/499 (86%), Gaps = 23/499 (5%)
Strand=Plus/Plus
Query 3 AAATCAATGTCGTCCCTGGAAAAGAAGAGGAAGAGGAAGACTACGACTAGGACAAAGAAG 62
|||||||||| |||||| |||| ||| | |||||||||||| || |||| ||| |||||
Sbjct 33 AAATCAATGTGGTCCCTCGAAACGAACAAGAAGAGGAAGACAACAACTACGACGGAGAAG 92
Query 63 AAGAAGCTGTCCCCAAATCAGTCA-ATCCCTATGATTTGCTATTG-GACATCATCGCACG 120
|||||| |||| ||||||| |||| ||| |||||||| ||||| | ||||||||||||
Sbjct 93 AAGAAGTTGTCTCCAAATCCGTCACTTCCGGATGATTTGGTATTGCG-CATCATCGCACG 151
Query 121 CGTCCCAAGATTGTACTATCCGACTCTCTCACTCGTTTCCAAGAGCTTTCGATCCCTCCT 180
|||| |||| ||||||||||| ||||||||||| ||||||||||| |||||||| |||||
Sbjct 152 CGTCTCAAGGTTGTACTATCCAACTCTCTCACTTGTTTCCAAGAGGTTTCGATCTCTCCT 211
Query 181 AGCTTCACCGGAGCTTTACAAGGCCAGCAGGTCATTCTTGGGTCACACCGAGCGTTGTCT 240
||||||||||||||||||||||| | |||||| ||| ||| ||||| ||| |||||||
Sbjct 212 AGCTTCACCGGAGCTTTACAAGG-C--CAGGTCGCTCTCGGGCCACACTGAGAGTTGTCT 268
Query 241 CTATGTGTGCTTACGGTGCTGTCCTGGTTATCGCTGGTTCACCCTGTGTCGGAAGCCAGA 300
|||||||||||||| |||||||||||||||||||||||||||||| || |||||||||||
Sbjct 269 CTATGTGTGCTTACAGTGCTGTCCTGGTTATCGCTGGTTCACCCTCTGCCGGAAGCCAGA 328
Query 301 TCAAACCCTATCCAATGACACCACTGAA-AAGAAGTCAAGTGGGTATGTTTTGGCAACAG 359
|||||||||||||||| |||||||| || |||||||||||||| ||||||||||||||||
Sbjct 329 TCAAACCCTATCCAATTACACCACT-AAGAAGAAGTCAAGTGGATATGTTTTGGCAACAG 387
Query 360 TCCCCATTCCTAGTTTTCATAAACCGCGCTTTTCGAGTCTCGTGGTGGTTGGTTCTGATA 419
| || ||||| |||||||| ||| | |||||||||||||||||| |||||||||| |||
Sbjct 388 TACCGATTCCCAGTTTTCAAAAAGGGAGCTTTTCGAGTCTCGTGGCGGTTGGTTCTAATA 447
Query 420 TCTA---C-T------A-C-A--T-CCACGGGCCCTCCTCTAACGTCTCGATTCTGGATT 464
| || | | | | | | ||||||||| |||| || |||||||||| ||||||
Sbjct 448 TTTATAACATTGGGGGATCCAACTACCACGGGCCTTCCTATAGCGTCTCGATTTTGGATT 507
Query 465 GCCGGTCTCACACGTGGCG 483
|||||||||| ||||||||
Sbjct 508 GCCGGTCTCATACGTGGCG 526
> Ahg317684 jgi|Araly1|317684|fgenesh1_pm.C_scaffold_3000700
Length=1047
Score = 267 bits (144), Expect = 2e-70
Identities = 352/446 (79%), Gaps = 39/446 (9%)
Strand=Plus/Plus
Query 75 CCAAATCAGTCA-ATCCCTATGATTTGCTATTGGA-CATCATCGCACGCGTCCCAAGATT 132
||||| | |||| |||| ||||||||||||| || |||| |||||||||| |||||||
Sbjct 58 CCAAACCCGTCACTTCCCGATGATTTGCTATT-GAGCATCTTCGCACGCGTGTCAAGATT 116
Query 133 GTACTATCCGACTCTCTCACTCGTTTCCAAGAGCTTTCGATCCCTCCTAGCTTCACCGGA 192
|||||||| ||||||||| | | | ||||||||||| |||||||||||||| ||
Sbjct 117 ATACTATCCTACTCTCTCA--C---T-C---AGCTTTCGATCTCTCCTAGCTTCACCAGA 167
Query 193 GCTTTACAAGGCCAGCAGGTCATTCTTGGGTCACACCGAGCGTTGTCTCTATGTGTGCTT 252
||||||||||| | ||||||| ||| || |||||||| ||||||||||||| |||||
Sbjct 168 GCTTTACAAGG-C--CAGGTCACTCTCGGCAAACACCGAGAGTTGTCTCTATGTATGCTT 224
Query 253 ACGGTGCTGTCCTGGTTATCGCTGGTTCACCCTGTGTCGGAAGCCAGATCAAACCCTATC 312
|||||||||| |||||||||||||||||||||| || || || || ||||||||| || |
Sbjct 225 ACGGTGCTGTTCTGGTTATCGCTGGTTCACCCTCTGCCGTAAACCTGATCAAACCATAAC 284
Query 313 CAATGACACCACTGAAAAGAAGTCAAGTGGGTATGTTTTGGCAACAGTCCCCATT-CC-- 369
|||| | | | || | |||||||||||| |||| |||||| | |||||| ||| ||
Sbjct 285 CAAT-A-A-TAAGGAGAGGAAGTCAAGTGGTTATGCTTTGGCTAGAGTCCCAATTCCCGG 341
Query 370 TAGTTTTCATAAACCGCGCTTTTCGAGTCTCGTGGTGGTTGGTTCTGATATCT---AC-- 424
| ||| || ||| || | |||||||||||||| |||||||||||||||| ||
Sbjct 342 TGGTTCTCCTAATGTACGATCTTCGAGTCTCGTGGCCGTTGGTTCTGATATCTACAACAT 401
Query 425 -T----A--CATC--C--A-CG-GGCCCTCCTCTAACGTCTCGATTCTGGATTGCCGGTC 471
| | |||| | | || |||||||||| ||||||||||||||||||||||||
Sbjct 402 TTGCGGATCCATCAACAAAGCGTCCCCCTCCTCTAGCGTCTCGATTCTGGATTGCCGGTC 461
Query 472 TCACACGTGGCGCCAGGTTCAAAGCT 497
||||| |||||| ||| || |||||
Sbjct 462 TCACAAGTGGCGAGAGGCTCCAAGCT 487
> Ahg937812 jgi|Araly1|937812|scaffold_502003.1
Length=1200
Score = 233 bits (126), Expect = 2e-60
Identities = 281/353 (80%), Gaps = 22/353 (6%)
Strand=Plus/Plus
Query 88 TCCCTATGATTTGCTATTGGACAT-CATCGCACGCGTCCCAAGATTGTACTATCCGACTC 146
|||| |||||||| |||| || | | ||||| ||| |||||||||||||||||||||
Sbjct 82 TCCCGATGATTTGATATT-GAGTTGTGTGGCACGGGTCTCAAGATTGTACTATCCGACTC 140
Query 147 TCTCACTCGTTTCCAAGAGCTTTCGATCCCTCCTAGCTTCACCGGAGCTTTACAAGGCCA 206
|||| ||||| ||||||||||||||||| ||||| ||||||||||||||||||||||| |
Sbjct 141 TCTCTCTCGTCTCCAAGAGCTTTCGATCACTCCTGGCTTCACCGGAGCTTTACAAGGCTA 200
Query 207 GCAGGTCATTCTTGGGTCACACCGAGCGTTGTCTCTATGTGTGCTTACGG-TG----C-T 260
| | ||| ||||||| | ||| ||| ||||||||||||| |||||| || || | |
Sbjct 201 G-A--TCACTCTTGGGACGCACGGAGAGTTGTCTCTATGTTTGCTTAAGGTTGACACCTT 257
Query 261 GTCCTGGTTATCGCTGGTTCACCCTGTGTCGGAAGCCAGATCAAACCCTATCCAATGACA 320
| | || ||||||||||||| || ||||| || ||||||||||| ||| | | |
Sbjct 258 TTAAAAGCAATAGCTGGTTCACCCTCTGCCGGAAACCTCATCAAACCCTAACCAGT-A-A 315
Query 321 CCACTG-AAAAGAAGTCAAGTGGGTATGTTTTGGCAACAGTCCCCATTCCT-AGTTTTCA 378
| | ||||||||||||||||||||||||||||||||||||| || || | || ||
Sbjct 316 -GA-AGAAAAAGAAGTCAAGTGGGTATGTTTTGGCAACAGTCCCAATCCCCCA-TTCTCC 372
Query 379 TAAACCGCGCTTTTCGAG-TCTCGTGG-TGGTTGGTTCTGATATCTACTACAT 429
| ||| ||| || || |||||||| || ||||||||||||||||| ||||
Sbjct 373 TCGTGCGCACTTGTC-AGGTCTCGTGGCTG-TTGGTTCTGATATCTACAACAT 423
> Ahg330600 jgi|Araly1|330600|fgenesh1_pm.C_scaffold_7002827
Length=1083
Score = 198 bits (107), Expect = 7e-50
Identities = 559/766 (73%), Gaps = 76/766 (10%)
Strand=Plus/Plus
Query 74 CCCAAATCAGTCA-ATCCCTATGATTTGCT-ATTGGACAT-CATCGCACGCGTCCCAAGA 130
|||||||| |||| |||| ||| ||||| || | | | |||||||| ||| |||||
Sbjct 42 CCCAAATCCGTCACTTCCCGATGCGTTGCTAATAAG-C-TGTATCGCACGAGTCTCAAGA 99
Query 131 TTGTACTATCCGACTCTCTCACTCGTTTCCAAGAGCTTTCGATCCCTCCTAGCTTCACCG 190
||||| |||||||||||||| || || ||||| ||||||||||| |||||||||||||||
Sbjct 100 TTGTATTATCCGACTCTCTCCCTTGTCTCCAAAAGCTTTCGATCTCTCCTAGCTTCACCG 159
Query 191 GAGCTTTACAAGGCCAGCAGGTCATTCTTGGGTCACACCGAGCGTTGTCTCTATGTGTGC 250
||||||||||||||| | | | | |||||| | ||||||| ||||||||||||| |||
Sbjct 160 GAGCTTTACAAGGCCCG-AT-T-ACTCTTGGACCGCACCGAGAGTTGTCTCTATGTATGC 216
Query 251 TTACGG-TGCTGTCCTGGTTAT--C----GCTGGTTCACCCTGTGTCGGAAGCCAGATCA 303
||| | | ||||| | | | |||||||||| || || | ||| || ||| |
Sbjct 217 TTAAAGCTAA-GTCCTTCTGAGAACCCTAGCTGGTTCACTCTCTGCCTGAAACCCGATGA 275
Query 304 AACCCTATCCAATGACACCACTGAA-AAGAA---GTCAAGTGGGTATGTTTTGGC-AACA 358
||||||| | ||||||| | | || ||||| |||||||| ||||||||||| || |
Sbjct 276 AACCCTAACTTATGACACAAGT-AATAAGAAAAAGTCAAGTGACTATGTTTTGGCTAA-A 333
Query 359 GTCCCCATTCCTAGTTT-TCATAAACC-GCGCTT--TTCGAGTCTCGTGGTGGTTGGTTC 414
||||| ||||| | || || | || | | ||||||||||||||||||||||||
Sbjct 334 GTCCCAATTCC-ACATTCTCCT---CCTGTGAAAAGTTCGAGTCTCGTGGTGGTTGGTTC 389
Query 415 TGATATCTACTACATCCACGGGCCCTCCTCTAACGTCTCGATTCTGGATTGCCGG-TCTC 473
| |||||||| |||| || | | | || ||| | | | |||| | | || |
Sbjct 390 TAATATCTACAACATT---GG-C--TG-T--AATATCT--A--CAGCATTGGCAGATC-C 435
Query 474 ACACGTGGCGCCAGGTTCAAA-GCT-CGATTCTAGATTGTCGGTCTCACAGGCGGCGCAA 531
| | | | || || || | | | ||| | ||||| |||||||||| ||||| |
Sbjct 436 AGA--T--CACCTTACTCTAACGTTTCTATTTTTGATTGCCGGTCTCACACATGGCGCGA 491
Query 532 GGCTCCAATCTTGCCGGTGGAAC-ATTCGTCACTTACTGCTAGCGTCCTTGGTGAAAAGA 590
|||||||| |||||| ||||| | ||| | || || ||||| ||||| ||| || |||||
Sbjct 492 GGCTCCAAGCTTGCCAGTGGAGCTATTTG-CAGTTTCTGCTGGCGTCGTTGATGGAAAGA 550
Query 591 TATATGTAGC-AGGATGTTACAGCGAT-ATGCATT-T-AGGTTCTTCTTT--C--TTT-G 641
|||||||| | || | | | || ||| | | ||| | | ||| | ||| |
Sbjct 551 TATATGTAACCAGAA-GCTGCAAAGATGACG-ATTCTTATAA-CTTGAAGAACACTTTCG 607
Query 642 AGGTGTTCGACACGAAAACGGAAGTTTGGGTT-AGTGAGCCCATCCCTTACAGCGACAGA 700
||||||||||||| ||||| ||||||||| | | || ||| | |||||||||| | | |
Sbjct 608 AGGTGTTCGACACAAAAACACAAGTTTGGGATCA-TGTGCCAAGCCCTTACAGCCAAACA 666
Query 701 AAATACAACTTTCTTCACCCCAAAAGCATTTGTATTGATGGAAAGATCC-ATGTAGTGAC 759
||| |||||| ||| || |||||||| | |||||||| | |||| | | || |||||
Sbjct 667 AAACACAACT--CTT-ACTCCAAAAGCCTATGTATTGACGAAAAG-TGGTACGTGGTGAC 722
Query 760 TGACAGTGAGGGGGTTGTTGCTTACAATCCCAAGGAAGGTATATGG 805
| | || ||| ||||| |||||||||||||| |||||| ||||
Sbjct 723 TAAAAGAAAGGTGGTTG---CTTACAATCCCAAGAAAGGTAAATGG 765
> Ahg929436 jgi|Araly1|929436|scaffold_301893.1
Length=979
Score = 150 bits (81), Expect = 2e-35
Identities = 261/342 (76%), Gaps = 35/342 (10%)
Strand=Plus/Plus
Query 816 ATCAGTATATGCGTTCAGATTCTTATTGTGAGATAGATGATATTTTGTACTCTG-TT-T- 872
|||| ||| || ||||||||||||||| ||||||| || || | ||||||| || |
Sbjct 520 ATCATTATTTGTATTCAGATTCTTATTGCAAGATAGACAATGTTCTCTACTCTGCTTCTG 579
Query 873 ATAGCAGAACGGTT-ATATGGTATGACACTGAGGCAAGCAGGTGGAGATATTTGG-AGGG 930
|| | || | ||| | ||||||||||||||| ||| | ||||||| |||||| |||
Sbjct 580 AT-G--GAGC-GTTCAGATGGTATGACACTGACATAAGTATGTGGAGAAATTTGGTAGGA 635
Query 931 CTTAGGACAACTTACGTTTCCTCTTGGTGCT-TC-TATTAG---GGCT---TA----GGA 978
||| ||| ||| || | ||||||| | || | |||| |||| || |||
Sbjct 636 CTT--CCCAAGTTA--TTACATCTTGGT--TATCGTGTTAGATTGGCTGACTATGGCGGA 689
Query 979 AAGTTAGCGGTTTTGTGGGACGAGGATTTGCTTTATGGTT-T--GACTAGT-TTCGTCTA 1034
||| |||| ||||||||||| ||||| ||| |||| || | |||| | | || |||
Sbjct 690 AAGCTAGCTGTTTTGTGGGAAGAGGAGCTGCCTTATTATTCTGGGACTTCTCTCCG-CTA 748
Query 1035 TAAGAAGAAGATTTGGTGTGCGGAGATTTCGCTTGAAAGAAGCAAAAGTTGCGAAAGTTT 1094
| |||||| |||||||||||||||||||||||||||||| |||||||||| |||| |||
Sbjct 749 TGAGAAGATGATTTGGTGTGCGGAGATTTCGCTTGAAAGGCGCAAAAGTTGGGAAA-TTT 807
Query 1095 TGGG-AA-GTTGAATGGTTTGATCATGTGCTTACAGTGCCTA 1134
||| || ||||| |||||||||||| |||||||||| ||||
Sbjct 808 GGGGGAATGTTGAGTGGTTTGATCATATGCTTACAGTCCCTA 849
Score = 71.3 bits (38), Expect = 2e-11
Identities = 53/60 (88%), Gaps = 2/60 (3%)
Strand=Plus/Plus
Query 439 CTCCTCTAACGTCTC-GATTCTGGATTGCCGGTCTCACACGTGGCGCCAGGTTCAAAGCT 497
|||||| | |||||| | ||||||||||||||||||||||||||||| ||| || |||||
Sbjct 161 CTCCTCGAGCGTCTCTG-TTCTGGATTGCCGGTCTCACACGTGGCGCGAGGCTCCAAGCT 219
> Ahg928652 jgi|Araly1|928652|scaffold_301109.1
Length=512
Score = 91.6 bits (49), Expect = 1e-17
Identities = 272/374 (73%), Gaps = 37/374 (10%)
Strand=Plus/Plus
Query 822 ATATGCGTTCAGATTCTTATTGTGAGATAGATG-ATATTTTGTACTCTGTTTAT-AGCAG 879
||||| ||||| ||||||||||||||||||| | || ||||||||| || | | | |||
Sbjct 128 ATATGTGTTCACATTCTTATTGTGAGATAGA-GAATGTTTTGTACTTTGCTGCTCA-CAG 185
Query 880 AACGGTTATATGGTATGACACTGAGGCAAGCAGGTGGAGATATTTGGAGGG-CT--TAGG 936
| || | || ||||||||| | ||| || | |||||| ||||| |||| | ||||
Sbjct 186 AGCGCTCATGTGGTATGACTTTCAGGTAAAAAACTGGAGAGATTTGAAGGGTTTGGTAGG 245
Query 937 ACAACTTACGTT---TCCTCTTGGT--GCTTCTATTAGG--GCTTA----GGAAAGTTAG 985
|| || | || |||||| | | | || ||| || | ||| |||||| |||
Sbjct 246 ACTACCCAAATTCCCTCCTCTCGCTCAGATTAGATT-GGCAGATTATGGTGGAAAGATAG 304
Query 986 CGGTTTTGTGGGACGAGGAT-TTGCTTTATGGTTTGACTAGTTTC-GTCTATAAGAAGAA 1043
|| | ||||||||| || || | ||||| | || ||| | | |||||||| | |
Sbjct 305 TGGCTATGTGGGACGTTAATGTTTC-ATATGG--TAAC-GGTTCCAG-CTATAAGACG-A 358
Query 1044 G-ATTTGGTGTGCGGAGATTTCGCTTGAAAGAAGCAAAAGTTGCGAAAGTTTTGGG-AA- 1100
| |||||||||||||||||||||||||||||| ||| ||||| |||| ||| ||| ||
Sbjct 359 GAATTTGGTGTGCGGAGATTTCGCTTGAAAGACTCAATAGTTGTGAAA-TTTGGGGGAAA 417
Query 1101 GTTGAATGGTTTGATCATG-TGCTTACAGTGCCTAAAGA-ATGTGA-ATTGGTGAAAGTT 1157
||||| ||| ||||| || ||| |||| | | || | || | | | | ||||| |||
Sbjct 418 GTTGAGTGGGTTGAT-ATTATGCATACAAT-CTTAGACTCATTT-ATACTCGTGAAGGTT 474
Query 1158 CTTGCTGCTACTGT 1171
|||||||||||||
Sbjct 475 ATTGCTGCTACTGT 488
> Ahg492252 jgi|Araly1|492252|fgenesh2_kg.7__1685__AT4G25710.1
Length=1389
Score = 84.2 bits (45), Expect = 2e-15
Identities = 55/60 (92%), Gaps = 0/60 (0%)
Strand=Plus/Plus
Query 438 CCTCCTCTAACGTCTCGATTCTGGATTGCCGGTCTCACACGTGGCGCCAGGTTCAAAGCT 497
||||||||| |||| ||||||||||||||||||||||||||||||||||| || |||||
Sbjct 491 CCTCCTCTAGTGTCTGGATTCTGGATTGCCGGTCTCACACGTGGCGCCAGGCTCCAAGCT 550
> Ahg315222 jgi|Araly1|315222|fgenesh1_pm.C_scaffold_2000255
Length=1125
Score = 71.3 bits (38), Expect = 2e-11
Identities = 82/101 (81%), Gaps = 12/101 (12%)
Strand=Plus/Plus
Query 1044 GATTTGGTGTGCGGAGATTTCGCTTGAAAGAAGCAAAAGTTGCGA-A--AGTTTTGGG-- 1098
||||||||||||||||||||||||||||||||| | | || || | || ||||||
Sbjct 984 GATTTGGTGTGCGGAGATTTCGCTTGAAAGAAG-AGGTGATG-GAGATGAGATTTGGGGG 1041
Query 1099 AA-GTTGAATGGTTTGAT-CATGTGCTTACAGTGCC-TAAA 1136
|| ||||| ||||||||| | ||||||| |||| || ||||
Sbjct 1042 AAAGTTGAGTGGTTTGATGC-TGTGCTTCCAGT-CCATAAA 1080
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43726985799
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5