BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G09925.1

Length=516
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg341128 jgi|Araly1|341128|fgenesh1_pg.C_scaffold_3000891           760    0.0  


> Ahg341128 jgi|Araly1|341128|fgenesh1_pg.C_scaffold_3000891
Length=516

 Score =  760 bits (411),  Expect = 0.0
 Identities = 481/516 (93%), Gaps = 0/516 (0%)
 Strand=Plus/Plus

Query  1    ATGGCGCAGAGGATCACAACATTGGTTCTGCTAATAGAGATATTGTTTCTGGTGAGTTGT  60
            ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGCGCAGAGGATCAGGACATTGGTTCTGCTAATAGAGATATTGTTTCTGGTGAGTTGT  60

Query  61   GTGACTCATATCACTACGACAGCAGCGTATAACAATGGAGATAAGATTCACGTCGCCGGA  120
            |||||||||||||| |||  ||||||| ||||  ||||||||  ||||||||||||||||
Sbjct  61   GTGACTCATATCACCACGGTAGCAGCGGATAATGATGGAGATGTGATTCACGTCGCCGGA  120

Query  121  AAAGTAATGTGTCAAGATTGTTCTCTGAACTACGACGAATGGATCAACGGTTCTGAACCC  180
            ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  121  AAAGTAATGTGCCAAGATTGTTCTCTGAACTACGATGAATGGATCAACGGTTCTGAACCC  180

Query  181  ATCAAAGGGGCAGTGGTATCAATCACTTGTATGGACGAAAGGAGAAGAGTGAGCTACTAT  240
            |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct  181  ATCAAAGGGGCAGTGGTATCAATCACATGTATGGACGAAAGGAGAAGAGTGAGATACTAT  240

Query  241  GGCAGCGATTTGACCGATGAGAGAGGCCAGTTCGATCTAATGGTCAACAAAGTCCTCTCC  300
            |||||||||  |||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct  241  GGCAGCGATAAGACCGATGAGAGAGGCCAGTTCGATCTAATCGTCAACAAAGTCCTCTAC  300

Query  301  CACGGCAAGGTTCTCAAGCCTCAACTTTGTAATGTCCGGCTCGTGTCTTCTCCGGACCTG  360
              |||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct  301  GGCGGCAAGGATCTCAAGCCTCAACTTTGTAATGTCCGGCTCGTGTCTTCTCCAGACCAG  360

Query  361  TCATGTAACATTCCCACCAATTTTGGGAACGGTCAAACCGGAGTGAAGCTAGTTCGACCA  420
            || |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  361  TCTTGTAACATCCCCACCAATTTTGGGAATGGTCAAACCGGAGTGAAGCTAGTTCGACCA  420

Query  421  TTCACAGTTTTCAGGGATCTGGTTAAGTATGTGGTTGGACCATTTTATTATACCACGCCA  480
            ||||  || |||| ||||||||||||||||||||| || ||||||||||||||||| || 
Sbjct  421  TTCATGGTATTCAAGGATCTGGTTAAGTATGTGGTCGGGCCATTTTATTATACCACTCCC  480

Query  481  ATGTGTGAGACGCCTAAATTTGAAAACAACTACTAA  516
            ||||||||||||||||||||||||||||| ||||||
Sbjct  481  ATGTGTGAGACGCCTAAATTTGAAAACAAATACTAA  516



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18772549788


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5