BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G09930.1
Length=1368
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478320 jgi|Araly1|478320|fgenesh2_kg.3__1021__AT3G09930.1 1893 0.0
> Ahg478320 jgi|Araly1|478320|fgenesh2_kg.3__1021__AT3G09930.1
Length=1334
Score = 1893 bits (1025), Expect = 0.0
Identities = 1235/1334 (93%), Gaps = 23/1334 (2%)
Strand=Plus/Plus
Query 28 aacac-acacacacacaaaacacacacaAGCCTTTTGGTCTGAATCTGATACATCAATAC 86
||||| ||| | |||| | ||||||||||| |||||||||||||||||||| |||||||
Sbjct 14 AACACAACA-AAACAC-ACACACACACAAGTATTTTGGTCTGAATCTGATACCTCAATAC 71
Query 87 ACCAACAACAATGGAGTTACCAAAACTATTAAtctcactctttctcttctcattctcatc 146
||||||||||||||||| || |||| |||| ||||| || ||||||||||||||||||||
Sbjct 72 ACCAACAACAATGGAGTCACTAAAAATATTCATCTCTCTTTTTCTCTTCTCATTCTCATC 131
Query 147 tttcttcttAGGTGCTGAATCGGATTATCCTCAGCATAGTAACTTGAAGAGACTGAGACC 206
|||||||||||||| |||||||||| ||| |||||||||||||||||||||| |||||||
Sbjct 132 TTTCTTCTTAGGTGTTGAATCGGATCATCTTCAGCATAGTAACTTGAAGAGATTGAGACC 191
Query 207 GAATAGACTGTTCGTGTTTGGAGATTCCTATGCAGACACCGGAAACATAAGGAAATCTCT 266
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 192 GAATAGACTGTTCGTGTTTGGAGATTCCTATGCAGACACCGGAAACATAAGGAAGTCTCT 251
Query 267 CTCCGATTCTTGGAAAATTCCTTACGGCATCACTTTCCCCCAAAAACCTTCCGGTCGTTT 326
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 252 CTCCGATTCTTGGAAAATTCCTTACGGCATCACTTTCCCCCAAAAACCCTCCGGTCGTTT 311
Query 327 CTCCGATGGCCGCGTCGCCACCGATTTTCTAGCAAGATACTTGGGGATAAAGTCACCAAT 386
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 312 CTCCGATGGCCGCGTCGCCACAGATTTTCTAGCAAGATACTTGGGTATAAAGTCACCAAT 371
Query 387 TCCGTACACGTGGAAGGATTATGCCGGAAAGGAACGGCTATTGTACGGAATGAATTATGC 446
|||||||||||||||| |||| || |||||||||||||||||||| ||||||||||||||
Sbjct 372 TCCGTACACGTGGAAGAATTACGCGGGAAAGGAACGGCTATTGTATGGAATGAATTATGC 431
Query 447 GTATGGAGGAACAGGAGTGTTTAAGACTAAAGATAATCCATTGCCAAACATGACAACTCA 506
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 432 GTATGGAGGAACAGGAGTGTTTAAGACTAAAGATAATCCTTTGCCAAACATGACAACTCA 491
Query 507 GATTGATTATTTCCAACGTGTCCTCGCCGCCGGCAATATCTACTCGCCTTCCGATCTCCC 566
|||||||||||||||||| || ||||||||||| ||||||||||| || |||||||||||
Sbjct 492 GATTGATTATTTCCAACGCGTACTCGCCGCCGGAAATATCTACTCTCCCTCCGATCTCCC 551
Query 567 CTCCTCCCTCGCTCTGGTCAGCGTCGCCGGCAACGACTACGCCACTTTCTTGGCCCTAAA 626
||||||||||||||| || ||||| |||||||||||||||||| ||||||||||||||||
Sbjct 552 CTCCTCCCTCGCTCTCGTTAGCGTTGCCGGCAACGACTACGCCTCTTTCTTGGCCCTAAA 611
Query 627 ACGCCCACTGACCGAGTTACCGGCATTCATGAAGCAAGTTGTTGATCAAATTGCGGTTAA 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 612 ACGCCCACTGACCGAGTTACCGGCATTCATGAAGCAAGTTGTTGATCAAATTGCGGTAAA 671
Query 687 CGCCATGCGCATCCACAAGTTGGGAGTAAATAAAATAGTAATTCCTTCAATGCAGCCACT 746
|| ||||||||||||||||||||||| ||||| ||| | ||||||||||||||||||||
Sbjct 672 TGCGATGCGCATCCACAAGTTGGGAGTGAATAAGATATTGATTCCTTCAATGCAGCCACT 731
Query 747 CGGATGCCTCCCTAGCATCACAGTCTTTAATTCATTCCAACGTTGCAACGCCACAGATAA 806
|||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||
Sbjct 732 CGGATGCCTCCCTAGCATTACAGTCTTTACTTCATTCCAACGTTGCAACGCCACAGACAA 791
Query 807 CGCATCAACGAATCTTCACAACTATTTGTTGCATAAAGCCATCGCTAGGCTTAATAATGA 866
||||||||| || ||||||||||||||||||||||||||| |||| ||| |||| |||||
Sbjct 792 CGCATCAACCAAACTTCACAACTATTTGTTGCATAAAGCCGTCGCCAGGATTAACAATGA 851
Query 867 GACAAAGCCATCCACTTTCGTCGTTCTTGACCACTACAACGCGTTCTTGACTGTTTTCAA 926
|||||||||||||||||||||||||||||| || |||||||| || ||||| ||||||||
Sbjct 852 GACAAAGCCATCCACTTTCGTCGTTCTTGATCATTACAACGCCTTTTTGACCGTTTTCAA 911
Query 927 GAACAAAGGACCGGAACCTGGTGTT-TCGAGGTTTGGGAACCCGTTAAAACCGTGTTGTG 985
||||||||||||||||||||||||| | |||||||||||||||||| |||||||||||||
Sbjct 912 GAACAAAGGACCGGAACCTGGTGTTAT-GAGGTTTGGGAACCCGTTGAAACCGTGTTGTG 970
Query 986 TCGGGGTCAACAGCAGTTACGACTGCTCAAATGTGGATGAGAAGGGTGAGAAGAAGTACA 1045
||||||||||||||| || |||||||||||| || || ||||||||||||||||||||||
Sbjct 971 TCGGGGTCAACAGCAATTTCGACTGCTCAAACGTTGACGAGAAGGGTGAGAAGAAGTACA 1030
Query 1046 TAATTTGTGAAGATCCAAAGGCTGCCTTCTTTTGGGACATCTTTCATCCGAGTGAAGAAG 1105
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1031 CAATTTGTGAAGATCCAAAGGCTGCCTTCTTTTGGGACATCTTTCATCCGACTGAAGAAG 1090
Query 1106 GATGGAGATCTGTTTACTCAGTTCTACACAAA-CATCTCAAAG-CTATTTGGATTTAAGA 1163
|||||||||| |||||||||||| |||||||| | ||| |||| | |||||||||| ||
Sbjct 1091 GATGGAGATCAGTTTACTCAGTTTTACACAAAAC-TCTAAAAGACG-TTTGGATTTAGGA 1148
Query 1164 GTAAGACTAATTATATGTTCTTC-tt-tttt-g-t-tttttATATCTTTACTCAGTTGTC 1218
|||||||||||||||||||||| || |||| | | |||||||||||| |||||||||||
Sbjct 1149 GTAAGACTAATTATATGTTCTTAATTCTTTTTGATGTTTTTATATCTTCACTCAGTTGTC 1208
Query 1219 TCGGCTTGTCTTTGTAGTAAAGAGAGTTTCACAAGTCAAGCTCACTGGTTCGAATGTCAA 1278
|||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||
Sbjct 1209 TCGGCTTGTCTTTGTAGTAAAGAGAGTTTCACAAGTCAAGCTCACTGGCTCGAGTCTCAA 1268
Query 1279 CACCAGA-AACTGGTGGGTATTATAAGGGATCGTCGAATTCATAGATTaaaaaaaaaaGC 1337
||| | | ||||||||| |||||||||| |||||||||||||| ||| ||||| ||
Sbjct 1269 CACAA-ACAACTGGTGGATATTATAAGG-ATCGTCGAATTCATGGAT-AAAAA-----GC 1320
Query 1338 AATGATTATAAAAA 1351
|||||||| |||||
Sbjct 1321 AATGATTAAAAAAA 1334
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51199077531
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5