BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G09940.1
Length=1497
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478321 jgi|Araly1|478321|fgenesh2_kg.3__1022__AT3G09940.1 2292 0.0
> Ahg478321 jgi|Araly1|478321|fgenesh2_kg.3__1022__AT3G09940.1
Length=1462
Score = 2292 bits (1241), Expect = 0.0
Identities = 1393/1464 (95%), Gaps = 20/1464 (1%)
Strand=Plus/Plus
Query 35 TTTATTAATTAATGGCGGAAGAGAAAAGCTACAAGTACGTGATCATTGGAGGTGGTGTAG 94
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2 TTTATTCATTAATGGCGGAAGAGAAAAGCTACAAGTACGTGATCATTGGAGGTGGTGTAG 61
Query 95 CCGGCGGTTACGCGGCGAGAGAG-TTTAGTAATCAGGGCCTGAAGCCTGGTGAACTCGCA 153
||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||
Sbjct 62 CCGGCGGTTACGCGGCGAGAGAGTTTTCG-AATCAGGGCCTGAAGCCTGGTGAACTCGCA 120
Query 154 ATCATTTCCAAGGAACCAGTGCCTCCTTTTGAGCGTCCTGAACTAACCAAGGTATATATT 213
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 121 ATCATTTCCAAGGAACCAGTGCCTCCTTTTGAGCGTCCTGAACTAACCAAGGCATATATC 180
Query 214 GACCTCGAAGTCAATCCGACCCTTGCAAATATCTATGTTTGTGCTGGAACTGGAGAAGCG 273
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 181 GACCTCGAAGTCAATCCGACCCTTGCAAAGATCTATGTCTGTGCTGGAACTGGAGAAGCG 240
Query 274 AAGCAGTACCCTAACTGGTACAAAGAGAAAGGGATTGATCTAATTGTGGGCACAGAGATA 333
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 241 AAGCAGTACCCTAACTGGTACAAAGAGAAAGGGATTGATCTAATTGTGAGCACAGAGATA 300
Query 334 GTCAAAGCAGATCTTGCTTCAAAGACACTTGTTAGTGATGATGGCAAAATTTACAAGTAC 393
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 301 GTCAAAGCAGATCTTGCTTCGAAGACACTTGTTAGTGATGATGGAAAAATTTACAAGTAC 360
Query 394 CAAACTTTGCTAATTGCAACCGGTTCTACTAACATAAGATTGTCAGAAATTGGCGTCCAA 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CAAACTTTGCTAATTGCAACCGGTTCTACTAACATAAGATTGTCAGAAATTGGCGTCCAA 420
Query 454 GAAGCAGATGTTAAGAATATATTCTACCTAAGAGAAATCGAGGATAGTGATGAGCTTGCC 513
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 421 GAAGCAGATGTTAAGAATATATTCTACCTAAGAGAAATCGAAGATAGTGATGAGCTTTCG 480
Query 514 TTGGCTATGGAACTATATGTGCAAAGGGGAAAGGCCGTCATCATTGGCGGCGGTTTCTTA 573
|| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 481 TTTGCTATGGAACTATATGTGCAAAGGGGAAAGGCCGTGGTTATTGGCGGCGGTTTCTTA 540
Query 574 GGGCTTGAGATAAGTTCTGCTCTAAGGGCTAATAATCATGAAGTGACCATGGTTTTTCCA 633
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GGGCTTGAGATAAGTTCTGCTCTAAGGGCTAATAATCATGAAGTGACCATGGTTTTTCCA 600
Query 634 GAACCTTGGCTTGTACACCGGTTTTTCACCGCTGAGATAGCTTCATTCTATGAGAGTTAC 693
||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 601 GAACCTTGGATTATACACCGGTTTTTCACCGCTGAGATAGCTTCATTCTATGAGGGTTAC 660
Query 694 TATGCCAACAAGGGAATCAAAATCATCAAGGGAACTGTAGCAACTGGATTTAGCACCAAC 753
| ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 661 TGTGCCAACAAGGGAATCAAAATCATCAAGGGAACTGTAGCCACTGGATTCAGCACCAAC 720
Query 754 TCAGATGGAGAGGTCACTGAGGTGAAACTAGAGGATGGAAGAACCCTAGAAGCTAACATA 813
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TCAGATGGAGAGGTCACGGAGGTGAAACTAGAGGATGGAAGAACCCTAGAAGCTAACATA 780
Query 814 GTTGTCGCTGGTGTCGGTGCTAGACCGGCCACCTCACTCTTCAAAGGCCAACTTGAAGAG 873
|| ||||| ||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 781 GTGGTCGCCGGTGTCGGTGCTAGACCGGTCACCTCACTCTTCAAAGGCCAAGTTGAAGAG 840
Query 874 GAGAAGGGTGGAATAAAGACTGATGGGTTCTTCAAAACAAGTGTGCCTGATGTATACGCA 933
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 841 GAGAAGGGTGGAATAAAGACTGATGGATTCTTCAAAACAAGTGTACCTGATGTATACGCA 900
Query 934 CTTGGAGATGTAGCCACATTCCCAATGAAAATGTATGGCGGGACGAGGCGTGTTGAACAC 993
|||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 901 CTTGGAGATGTAGCTACATTCCCCATGAAAATGTATGGCGGGATGAGGCGTGTTGAACAC 960
Query 994 GCCGACAATGCTCGCAAATCTGCTGCACAAGCAGTCAAAGCAATCAAAGCGGGTGAAGAA 1053
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 961 GCCGACAATGCTCGCAAATCTGCTGCACAAGCAGTCAAAGCAATCAAAGCGGCTGAAGAA 1020
Query 1054 GGGAAAACGATCCCAGATTACGATTATCTTCCCTATTTCTACTCTCGATTTTTCAAACTA 1113
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1021 GGGAAAACGATCCCAGATTACGATTATCTTCCCTATTTCTACTCTCGGTTTTTCAATCTC 1080
Query 1114 TCGTGGGAATTCTATGGGGAAAACGTTGGAGAATCTGTACTGTTTGGAGATAATGACCCG 1173
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1081 TCGTGGGAATTCTATGGGGACAATGTTGGAGAATCTGTACTGTTTGGAGATAATGACCCG 1140
Query 1174 AAATCTCCAAAGCCAAAGTTTGGGACGTATTGGGTTAAAGATGGGAAAGTAGTAGGAGTG 1233
|||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1141 AAATCTCCCAAGCCGAAGTTTGGGACGTATTGGGTTAAAGATGGGAAAGTAGTAGGGGTG 1200
Query 1234 TTCCTAGAAGGAGGTACTCAAGAGGAACACAAGGCTATTGCTAAAGTGGCACGAGCACAA 1293
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 TTTCTAGAAGGAGGAACTCAAGAGGAACACAAGGCTATTGCTAAAGTGGCACGAGCACAA 1260
Query 1294 CCTTCCGTTGAGAGTCTTGACGTGTTATCCGAGGAAGGCCTTTCTTTCGCCACCAAGTTC 1353
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1261 CCTTCCGTTGAGAGTCTTGACGTGTTATCAGAGGAAGGCCTTTCTTTCGCCACCAAGTTC 1320
Query 1354 TATAGCACCT---CTCTTTGAGACATTGGGTCTTGTT-T-----A---GTCACATTGAT- 1400
||||||| || |||||||||||||||||||||||| | | ||| |||||||
Sbjct 1321 TATAGCAGCTAGTCTCTTTGAGACATTGGGTCTTGTTCTTGGGTATAAGTCGCATTGATT 1380
Query 1401 G-T--AATAATCTCCTTTGTCTTTGATTTCATATCGAGCCCCTATTGTATTTCGAAAAAT 1457
| | |||||||||||||||| |||||||||| |||||||||||| ||||| | |||||
Sbjct 1381 GATGTAATAATCTCCTTTGTCCTTGATTTCAT--CGAGCCCCTATTATATTTGGCAAAAT 1438
Query 1458 AAATTAAATATAATAATGCATTTT 1481
|||||| |||||||||||||||||
Sbjct 1439 AAATTAGATATAATAATGCATTTT 1462
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56030750395
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5