BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G09950.1

Length=544
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg928678 jgi|Araly1|928678|scaffold_301135.1                        449    8e-126


> Ahg928678 jgi|Araly1|928678|scaffold_301135.1
Length=323

 Score =  449 bits (243),  Expect = 8e-126
 Identities = 285/305 (93%), Gaps = 4/305 (1%)
 Strand=Plus/Plus

Query  1    GATGGGGAAGG-G-G-GGTTGGCTTCTTAACTTTCTGAACCATGCCAAAAATCAAGAAAG  57
            ||||||||||| | |   |||||||||||||||||||||||||||||| ||||| |||| 
Sbjct  20   GATGGGGAAGGTGAGTAATTGGCTTCTTAACTTTCTGAACCATGCCAACAATCAGGAAAA  79

Query  58   TGTGGAGAATCTTGACAAAAACGGTGCCGTAAAGGCCCCAAGCAGTGGGTTTAAGATGCC  117
            | ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct  80   TATGGAGAATCTTGACAAAAACGGTGCCGTAGAGGCCTCAAGCAGTGGGTTTAAGATGCC  139

Query  118  GTTGCATTACCCAAGATACACAAAGGAGGATTATGAAGAGATGGAAGAGTGGAGATTGGA  177
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  140  GTTGCATTACCCAAGATACACAAAGGAGGATTATGAGGAGATGGAAGAGTGGAGATTGGA  199

Query  178  TTTGCTTCTCTCGGAATACGGACTTCTTGCCTTCCATGACAATACTCTCCATGAGAAGCG  237
            |||||||||||| || || |||||||||||||||||||||||||||||||||||||||||
Sbjct  200  TTTGCTTCTCTCAGACTATGGACTTCTTGCCTTCCATGACAATACTCTCCATGAGAAGCG  259

Query  238  AGCTTTTGCAATCGACACTTTTATATGGCCTCATCACCCATAATTTCATCTCCTTCATTT  297
            ||||||||| |||||||||||| |||||||||||||||||||||| || |||||||||| 
Sbjct  260  AGCTTTTGCGATCGACACTTTTCTATGGCCTCATCACCCATAATTCCACCTCCTTCATT-  318

Query  298  ATCTT  302
            |||||
Sbjct  319  ATCTT  323



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19840906280


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5