BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G09960.1
Length=1113
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478324 jgi|Araly1|478324|fgenesh2_kg.3__1025__AT3G09970.1 1016 0.0
Ahg478323 jgi|Araly1|478323|fgenesh2_kg.3__1024__AT3G09960.1 869 0.0
Ahg945815 jgi|Araly1|945815|scaffold_702044.1 457 9e-128
> Ahg478324 jgi|Araly1|478324|fgenesh2_kg.3__1025__AT3G09970.1
Length=1212
Score = 1016 bits (550), Expect = 0.0
Identities = 836/971 (86%), Gaps = 31/971 (3%)
Strand=Plus/Plus
Query 19 CATTGCAAGAAACA-AGACTAATGATGACCCAAAAACCACGAACTGTGATCTGCGTCGGA 77
|||| ||||||||| ||||||||| | | |||||||||||||| ||| |||||||||||
Sbjct 15 CATTTCAAGAAACAGAGACTAATG--G-CGCAAAAACCACGAACGGTGCTCTGCGTCGGA 71
Query 78 GACATCCATGGAAACATATCAAAGCTCAATAAACTCTGGCTTAATCTTCAATCCGATATC 137
|||||||||||| | ||||||||||||||||| |||||||||||||| ||||||| ||
Sbjct 72 GACATCCATGGATATATATCAAAGCTCAATAACCTCTGGCTTAATCTCCAATCCGCCAT- 130
Query 138 CAAAAC-TCAGATTTCAGCTCAGCTCTCGTCATCTTCCTCGGCGACTACTGCGATCGTGG 196
| | | ||||| |||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 131 CGACCCATCAGAATTCAGCTCAGCTCTCGTCATCTTCCTCGGCGATTACTGCGATCGGGG 190
Query 197 ACCGGAGACTC-GAAAAGTCATCGACTTCTTGATCTCTTTGCCGGAGAAACATCCCGATC 255
||||||||| | |||||||||| || ||||| |||||| | |||||||||||||||||||
Sbjct 191 ACCGGAGAC-CGGAAAAGTCATTGATTTCTTAATCTCTCTACCGGAGAAACATCCCGATC 249
Query 256 AGACCCATGTCTTTCTTGCCGGAAACCACGACTTTG-CTTTTGCTGGCTTCTTGGGTTTG 314
| || || |||||||| ||||| ||||||||||| | ||| | |||| ||||||||||||
Sbjct 250 AAACTCACGTCTTTCTCGCCGGGAACCACGACTTCGCCTTCT-CTGGGTTCTTGGGTTTG 308
Query 315 TTACCTCGCCCTTCAGATGGGTCTGAGTTT-AAGGAAACGTGGAAAGAGTACTCA-AAAA 372
|| || || ||||||||||||||||| ||| ||||| |||||||| |||||| | |
Sbjct 309 TTGCCCCGTCCTTCAGATGGGTCTGA-TTTGAAGGATACGTGGAAGGAGTAC-GAGGGTA 366
Query 373 GTGAGGAGAGAGAAGGATGGTATAAAGGTGAAGGGTTTGAGAATATGCATCTCCAAAGCA 432
| |||||||||||||||||||||| |||||||||||||||| |||||||||| ||| | |
Sbjct 367 GCGAGGAGAGAGAAGGATGGTATAGAGGTGAAGGGTTTGAGGATATGCATCTTCAAGGTA 426
Query 433 GGAGATGGGC-GGGAAAGATT-AGGGTTCAGTTCGATTATTCCG-CATATGGAGT-GTTG 488
|||||||||| || ||| ||| ||| | | ||| | |||| | | | ||| | | |
Sbjct 427 GGAGATGGGCTGGTAAA-ATTAAGGCTAC-GTT---TAATTCTGTGAAAGGGA-TGGCT- 479
Query 489 TATAATGGATCAATATACGATGC-GGCGTCTACTTTTGAATCTTATGGCGTTCCTCATGG 547
||||| || || || |||||||| || || ||||||||||||||||| |||||||||||
Sbjct 480 TATAAGGGTTCGATTTACGATGCTGG-ATCGACTTTTGAATCTTATGGTGTTCCTCATGG 538
Query 548 ATCTTCTGATTTGATAAAGGCAGTACCTGAGAGTCACAAGAAATTCTTGACCAATATGGT 607
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 539 ATCTTCTGATTTGATGAAGGCAGTACCTGAGAGTCACAAGAAGTTCTTGACCAATATGGT 598
Query 608 TTGGGTACATAAAGAGGATGATGTTTGTATAGAAACAGAGGAAGGCCTTACGCATTGTAA 667
||||| ||| ||||| | |||||||||||||||||||||||||| |||| |||||||||
Sbjct 599 ATGGGTTCATGAAGAGAACGATGTTTGTATAGAAACAGAGGAAGGGCTTAGGCATTGTAA 658
Query 668 GTTGATTGCCGTACATGCTGGTCTAGAGACAA-AGAATAACGTAGAAGAACAGCTTAAAC 726
|||||| ||||||||||||||| |||||| || |||||||||||||||||| || || |
Sbjct 659 GTTGATCGCCGTACATGCTGGTTTAGAGA-AAGGGAATAACGTAGAAGAACAACTGAAGC 717
Query 727 TATTGAGAGATAAAGACACAAGCATCCCAAGAATACAACCTCTAACTGGTCGGAAAACCG 786
| ||||||| ||||||||| |||||| ||| |||||||| ||||| ||||||||||| ||
Sbjct 718 TTTTGAGAGCTAAAGACACTAGCATCTCAAAAATACAACATCTAAGTGGTCGGAAAAACG 777
Query 787 TTTGGGGGATCCCACAGGAACTGGATGATAAAAAGACTATTGTTGTTAGCGGCCACCATG 846
|||||| ||||||||||| |||||||||||| | ||| | ||||| || || |||||||
Sbjct 778 TTTGGGACATCCCACAGGAGCTGGATGATAAACATACTGTCGTTGTAAGTGGGCACCATG 837
Query 847 GGAAACTTCACATCGATGGCTTGAGATTGATCATCGATGAAGGTGGTGGATATACC-GAT 905
| |||||||||||||||||| |||||||||| ||||||||||| ||||||| | || |||
Sbjct 838 GAAAACTTCACATCGATGGCATGAGATTGATAATCGATGAAGGCGGTGGAT-TCCCGGAT 896
Query 906 ACACCTTTGGCTGCAATTGTTCTTCCTTCTAAGAAGATTATCCGCGACACCGATAATTTT 965
| |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 897 AAACCTGTGGCTGCAATTGTTCTTCCTTCCAAGAAGATTATCCGCGACACCGATAATTTG 956
Query 966 TCCAATTAAGT 976
|| | ||||||
Sbjct 957 TCTAGTTAAGT 967
> Ahg478323 jgi|Araly1|478323|fgenesh2_kg.3__1024__AT3G09960.1
Length=972
Score = 869 bits (470), Expect = 0.0
Identities = 591/649 (91%), Gaps = 10/649 (2%)
Strand=Plus/Plus
Query 354 TGGAAAGAGTACTCAAAAAGTGAGGAGAGAGAAGGATGGTATAAAGGTGAAGGGTTTGAG 413
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 326 TGGAAGGAGTACTCAAAAAGTGAGGAGAGAGAAGGATGGTATAAAGGTGAAGGGTTCGAG 385
Query 414 AATATGCATCTCCAAAGCAGGAGATGGGCGGGAAAGATTAGGGTTCAGTTCGATTATTCC 473
|||||||||||||||| || |||||||||||||||||||||| ||||||||||||||||
Sbjct 386 GATATGCATCTCCAAAGTAGAAGATGGGCGGGAAAGATTAGGGATCAGTTCGATTATTCC 445
Query 474 GCATATGGAGTGTTGTATAATGGATCAATATACGATGCGGCGTCTACTTTTGAATCTTAT 533
|||||||||||||||||||||||||| ||||||||||| || || ||||||||||| |||
Sbjct 446 GCATATGGAGTGTTGTATAATGGATCGATATACGATGCTGCCTCGACTTTTGAATCCTAT 505
Query 534 GGCGTTCCTCATGGATCTTCTGATTTGATAAAGGCAGTACCTGAGAGTCACAAGAAATTC 593
|||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |||
Sbjct 506 GGCGTTCCTCATGGATCTTCTGATTTGATAAATGCAGTATCTGAGAGTCACAAGAAGTTC 565
Query 594 TTGACCAATATGGTTTGGGTACATAAAGAGGATGATGTTTGTATAGAAACAGAGGAAGGC 653
|||||||||||||| ||||| ||| ||||||| ||||||||||||||||||||| ||||
Sbjct 566 TTGACCAATATGGTATGGGTTCATGAAGAGGAAGATGTTTGTATAGAAACAGAGAAAGGG 625
Query 654 CTTACGCATTGTAAGTTGATTGCCGTACATGCTGGTCTAGAGACAAAG-AATAACGTAGA 712
|||| ||||||||||||||| || |||||||||||| |||||| || | |||||||||||
Sbjct 626 CTTAAGCATTGTAAGTTGATAGCTGTACATGCTGGTTTAGAGA-AAGGGAATAACGTAGA 684
Query 713 AGAACAGCTTAAACTATTGAGAGATAAAGACACAAGCATCCCAAGAATACAAC-----C- 766
||||||||||||||||||||||| ||||||||||||||| ||||| ||||||| |
Sbjct 685 AGAACAGCTTAAACTATTGAGAGCTAAAGACACAAGCATTCCAAGGATACAACATGAACC 744
Query 767 TCTAACTGGTCGGAAAACCGTTTGGGGGATCCCACAGGAACTGGATGATAAAAAGACTAT 826
|||||||||||||||||||||||||| ||||||| |||||| ||||||||| ||||| |
Sbjct 745 TCTAACTGGTCGGAAAACCGTTTGGGACATCCCACGGGAACTAGATGATAAACAGACTCT 804
Query 827 TGTTGTTAGCGGCCACCATGGGAAACTTCACATCGATGGCTTGAGATTGATCATCGATGA 886
| | |||||||||||||| |||||||||||||| |||||||| |||||||||||||||||
Sbjct 805 TATAGTTAGCGGCCACCACGGGAAACTTCACATTGATGGCTTAAGATTGATCATCGATGA 864
Query 887 AGGTGGTGGATATACCGATACACCTTTGGCTGCAATTGTTCTTCCTTCTAAGAAGATTAT 946
||| |||||||| |||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 865 AGGCGGTGGATACGCCGATAAACCCTTGGCTGCAATTGTTCTTCCTTCTAAGAAGATTAT 924
Query 947 CCGCGACACCGATAATTTTTCCAATTAAGTATAT-CATGTCTTCATATT 994
||||||||||||||| |||||||||| ||||| | | |||||| |||||
Sbjct 925 CCGCGACACCGATAACTTTTCCAATTGAGTATCTAC-TGTCTTTATATT 972
Score = 459 bits (248), Expect = 3e-128
Identities = 301/325 (93%), Gaps = 9/325 (3%)
Strand=Plus/Plus
Query 2 CTTAGAATTATTGATTGCATTGCAAGAAACAAGACTAATGATGACCCAAAAACCACGAAC 61
||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 1 CTTAGGATTATTGATTGCATTGCAAGAAACAACACTAATGATGCCCCAAAAACCACGAAC 60
Query 62 TGTGATCTGCGTCGGAGACATCCATGGAAACATATCAAAGCTCAATAAACTCTGGCTTAA 121
||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 61 TGTGATCTGTGTCGGAGACATCCATGGAAACATATCACTGCTTAATAAACTCTGGCTTAA 120
Query 122 TCTTCAATCCGATATCCAA-AACTCAGATTTCAGCTCAGCTCTCGTCATCTTCCTCGGCG 180
|||||||||||| ||| || || |||||||||| ||||||||||||||||||||||||||
Sbjct 121 TCTTCAATCCGACATCGAACAA-TCAGATTTCAACTCAGCTCTCGTCATCTTCCTCGGCG 179
Query 181 ACTACTGCGATCGTGGACCGGAGACTCGAAAAGTCATCGACTTCTTGATCTCTTTGCCGG 240
| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 180 ATTACTGCGATCGTGGACCGGAGACTAAAAAAGTCATCGACTTCTTGATCTCTTTGCCGG 239
Query 241 AGAAACATCCCGA------T-CAGACCCATGTCTTTCTTGCCGGAAACCACGACTTTGCT 293
||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 240 AGAAACATCCCGAGCAGACTGCAGACCCATGTCTTTCTTGCCGGAAACCACGACTTTGCT 299
Query 294 TTTGCTGGCTTCTTGGGTTTGTTAC 318
|||||||| |||||||||||| |||
Sbjct 300 TTTGCTGGGTTCTTGGGTTTGATAC 324
> Ahg945815 jgi|Araly1|945815|scaffold_702044.1
Length=751
Score = 457 bits (247), Expect = 9e-128
Identities = 370/428 (86%), Gaps = 14/428 (3%)
Strand=Plus/Plus
Query 48 CAAAAACCACGAACTGTGATCTGCGTCGGAGACATCCATGGAAACATATCAAAGCTCAAT 107
|||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 27 CAAAAACCACGAACGGTGATCTGCGTCGGAGACATCCATGGATACATATCGAAGCTCAAT 86
Query 108 AAACTCTGGCTTAATCTTCAATCCGATATCCAAAAC-TCAGATTTCAGCTCAGCTCTCGT 166
|| |||||||||||||| ||||||| || | | | ||||| |||||||||||||||||
Sbjct 87 AACCTCTGGCTTAATCTCCAATCCGCCAT-CGACCCATCAGAATTCAGCTCAGCTCTCGT 145
Query 167 CATCTTCCTCGGCGACTACTGCGATCGTGGACCGGAGACTCG-AAAAGTCATCGACTTCT 225
||||||||||||||| ||||||||||||||||| ||||| || |||||||||||| ||||
Sbjct 146 CATCTTCCTCGGCGATTACTGCGATCGTGGACCAGAGAC-CGGAAAAGTCATCGATTTCT 204
Query 226 TGATCTCTTTGCCGGAGAAACATCCCGATCAGACCCATGTCTTTCTTGCCGGAAACCACG 285
| |||||| | |||||||||||||||||||| || || |||||||| ||||| |||||||
Sbjct 205 TAATCTCTCTACCGGAGAAACATCCCGATCAAACTCACGTCTTTCTCGCCGGGAACCACG 264
Query 286 ACTTTGCTTT-TGCTGGCTTCTTGGGTTTGTTACCTCGCCCTTCAGATGGGTCTGAGTTT 344
|||| || || | |||| |||||||||||||| || || ||||||||||||||||| |||
Sbjct 265 ACTTCGCCTTCT-CTGGGTTCTTGGGTTTGTTGCCCCGTCCTTCAGATGGGTCTGA-TTT 322
Query 345 -AAGGAAACGTGGAAAGAGTACTCAAAA-AGTGAGGAGAGAGAAGGATGGTATAAAGGTG 402
||||| |||||||| |||||| | || |||||||||||||||||||||| |||||
Sbjct 323 GAAGGATACGTGGAAGGAGTACG-AGGGTAGCGAGGAGAGAGAAGGATGGTATAGAGGTG 381
Query 403 AAGGGTTTGAGAATATGCATCTCCAAAGCAGGAGATGGGCGGG-AAAGATTAGGGTT-CA 460
||||||| ||| |||||||||| ||| | ||||||||||| || ||| |||| |||| |
Sbjct 382 AAGGGTTCGAGGATATGCATCTTCAAGGTAGGAGATGGGCTGGTAAA-ATTAAGGTTAC- 439
Query 461 GTTCGATT 468
|||| |||
Sbjct 440 GTTCAATT 447
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41477733696
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5