BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G09970.1
Length=1207
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478324 jgi|Araly1|478324|fgenesh2_kg.3__1025__AT3G09970.1 1679 0.0
Ahg478323 jgi|Araly1|478323|fgenesh2_kg.3__1024__AT3G09960.1 706 0.0
Ahg945815 jgi|Araly1|945815|scaffold_702044.1 699 0.0
> Ahg478324 jgi|Araly1|478324|fgenesh2_kg.3__1025__AT3G09970.1
Length=1212
Score = 1679 bits (909), Expect = 0.0
Identities = 1129/1228 (92%), Gaps = 44/1228 (4%)
Strand=Plus/Plus
Query 1 AAGTACATTATCATCATTTCAAGAAACAGAGAGAGACTAATGGCGCAAAAACCACGAACG 60
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1 AAGTACATTATCATCATTTCAAGAAAC----AGAGACTAATGGCGCAAAAACCACGAACG 56
Query 61 GTGATCTGCGTCGGAGACATCCATGGATACATATCAAAGCTCAATAACCTCTGGCTTAAT 120
||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 57 GTGCTCTGCGTCGGAGACATCCATGGATATATATCAAAGCTCAATAACCTCTGGCTTAAT 116
Query 121 CTCCAATCTGCCATCGACCCATCAGATTTCAGCTCAGCTCTCGTCATATTCCTTGGCGAT 180
|||||||| ||||||||||||||||| |||||||||||||||||||| ||||| ||||||
Sbjct 117 CTCCAATCCGCCATCGACCCATCAGAATTCAGCTCAGCTCTCGTCATCTTCCTCGGCGAT 176
Query 181 TACTGCGATCGTGGACCGGAGACTC-GAAAAGTCATCGATTTCTTAATCTCTCTGCCGGA 239
||||||||||| ||||||||||| | |||||||||| ||||||||||||||||| |||||
Sbjct 177 TACTGCGATCGGGGACCGGAGAC-CGGAAAAGTCATTGATTTCTTAATCTCTCTACCGGA 235
Query 240 GAAACATCCCGATCAAACTCATGTCTTTCTCGCCGGGAACCATGACTTTGCCTTCTCTGG 299
||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||
Sbjct 236 GAAACATCCCGATCAAACTCACGTCTTTCTCGCCGGGAACCACGACTTCGCCTTCTCTGG 295
Query 300 GTTCTTAGGTTTGTTGCCTCGTCCTTCAGATGGATCTGATTTGAAGGATACGTGGAAGGA 359
|||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 296 GTTCTTGGGTTTGTTGCCCCGTCCTTCAGATGGGTCTGATTTGAAGGATACGTGGAAGGA 355
Query 360 GTACTCA-AAAAGTGAGGAGACAGAAGGATGGTATACAGGTGAAGGGTTCGAAGATATGC 418
|||| | || ||||||| |||||||||||||| |||||||||||| || |||||||
Sbjct 356 GTAC-GAGGGTAGCGAGGAGAGAGAAGGATGGTATAGAGGTGAAGGGTTTGAGGATATGC 414
Query 419 ATCTTCAAGGTAGAAGATGGGCTGGTAAAATTAAGGCTACGTTCAATTCTGTGAAAGGGA 478
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 415 ATCTTCAAGGTAGGAGATGGGCTGGTAAAATTAAGGCTACGTTTAATTCTGTGAAAGGGA 474
Query 479 TGGCTTATAAAGGATCGATTTACGATGCTGGATCGACTTTTGAATCTTATGGCGTTCCAC 538
|||||||||| || |||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 475 TGGCTTATAAGGGTTCGATTTACGATGCTGGATCGACTTTTGAATCTTATGGTGTTCCTC 534
Query 539 ATGGATCTTCTGATTTGATGAAGGCAGTACCTGAGAGTCACAAGAAGTTCTTGACCAATA 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 ATGGATCTTCTGATTTGATGAAGGCAGTACCTGAGAGTCACAAGAAGTTCTTGACCAATA 594
Query 599 TGGTATGGGTTCATGAAGAGGACGATGTTTGTATAGAAACAGAGGAAGGGCTTAAGCATT 658
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 595 TGGTATGGGTTCATGAAGAGAACGATGTTTGTATAGAAACAGAGGAAGGGCTTAGGCATT 654
Query 659 GTAAGTTGATCGCCGTACATGCTGGTTTAGAGAAAGGGAATAACGTAGAAGAACAACTGA 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 GTAAGTTGATCGCCGTACATGCTGGTTTAGAGAAAGGGAATAACGTAGAAGAACAACTGA 714
Query 719 AGCTTTTGAGAGCTAAAGACACTAGCATCTCAAAAATACAACATCTAAGTGGTAGGAAAA 778
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 715 AGCTTTTGAGAGCTAAAGACACTAGCATCTCAAAAATACAACATCTAAGTGGTCGGAAAA 774
Query 779 ACGTTTGGGACATCCCACAGGAGCTGGATGATAAACATACTGTTGTTGTTAGCGGGCACC 838
||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||
Sbjct 775 ACGTTTGGGACATCCCACAGGAGCTGGATGATAAACATACTGTCGTTGTAAGTGGGCACC 834
Query 839 ATGGAAAACTTCACATCGATGGTATGAGATTGATCATCGATGAAGGCGGTGGATTCCCGG 898
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 835 ATGGAAAACTTCACATCGATGGCATGAGATTGATAATCGATGAAGGCGGTGGATTCCCGG 894
Query 899 ATAAACCAGTGGCAGCAATTGTTCTTCCTTCCAAGAAGATTATCCGTGACACCGATAATT 958
||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 895 ATAAACCTGTGGCTGCAATTGTTCTTCCTTCCAAGAAGATTATCCGCGACACCGATAATT 954
Query 959 TGTCTAGTTAAGTTTTTCTCATCTA-CTATTGTACCAAAGTCAATTTTGATTTCAAAATA 1017
||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 955 TGTCTAGTTAAGTTTTTCTCATCTATCTATTGTACCAAAGTAAATTTTGATTTCAAAATA 1014
Query 1018 AATGTAGTAAGGTTTAGCACTAAATT---G--A---A-TTTACTTTTCTTACAAAGAAAA 1068
| |||||||||| | ||||||||||| | | | |||||| |||||||||||||||
Sbjct 1015 ATTGTAGTAAGGCT-AGCACTAAATTTCAGCTATTTAATTTACTGTTCTTACAAAGAAAA 1073
Query 1069 TAAATGGGCCTCTGAAAGA---G----T--AA---GCCCAGATTT-TGGAAGCGGTCTAG 1115
|||||| ||||||||||| | | || ||| |||||| || | |||||||||
Sbjct 1074 TAAATGAGCCTCTGAAAGCCTCGCAAATCCAATAAGCCAAGATTTATGTA-GCGGTCTAG 1132
Query 1116 TGGTGTAATGTAG-CTCGAAATCTT-TTGGGTTGTTCAAAAAA-GCCCAAACAAAACATG 1172
| | |||| || |||||||| || ||||||||||||||||| ||||||| ||| | |
Sbjct 1133 TTATATAATA-AGGCTCGAAAT-TTATTGGGTTGTTCAAAAAAAGCCCAAA-AAA-C-TA 1187
Query 1173 CTATAATCCATTTTTAATCGAAATTATT 1200
| | | ||||||||||||| ||||||||
Sbjct 1188 C-A-A-TCCATTTTTAATCAAAATTATT 1212
> Ahg478323 jgi|Araly1|478323|fgenesh2_kg.3__1024__AT3G09960.1
Length=972
Score = 706 bits (382), Expect = 0.0
Identities = 552/631 (87%), Gaps = 24/631 (4%)
Strand=Plus/Plus
Query 346 GATACGTGGAAGGAGTACTCAAAAAGTGAGGAGACAGAAGGATGGTATACAGGTGAAGGG 405
||||| |||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 320 GATACATGGAAGGAGTACTCAAAAAGTGAGGAGAGAGAAGGATGGTATAAAGGTGAAGGG 379
Query 406 TTCGAAGATATGCATCTTCAAGGTAGAAGATGGGCTGGTAAA-ATTAAGGCTAC-GTTC- 462
||||| ||||||||||| ||| ||||||||||||| || ||| |||| || | | ||||
Sbjct 380 TTCGAGGATATGCATCTCCAAAGTAGAAGATGGGC-GGGAAAGATTAGGGAT-CAGTTCG 437
Query 463 A--ATTCTGTGAAAGGGATG-GCT-TATAAAGGATCGATTTACGATGCTGGATCGACTTT 518
| |||| | | | ||| | | | ||||| |||||||| |||||||||| ||||||||
Sbjct 438 ATTATTCCG-CATATGGA-GTGTTGTATAATGGATCGATATACGATGCTGCCTCGACTTT 495
Query 519 TGAATCTTATGGCGTTCCACATGGATCTTCTGATTTGATGAAGGCAGTACCTGAGAGTCA 578
|||||| ||||||||||| |||||||||||||||||||| || |||||| ||||||||||
Sbjct 496 TGAATCCTATGGCGTTCCTCATGGATCTTCTGATTTGATAAATGCAGTATCTGAGAGTCA 555
Query 579 CAAGAAGTTCTTGACCAATATGGTATGGGTTCATGAAGAGGACGATGTTTGTATAGAAAC 638
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 556 CAAGAAGTTCTTGACCAATATGGTATGGGTTCATGAAGAGGAAGATGTTTGTATAGAAAC 615
Query 639 AGAGGAAGGGCTTAAGCATTGTAAGTTGATCGCCGTACATGCTGGTTTAGAGAAAGGGAA 698
|||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 616 AGAGAAAGGGCTTAAGCATTGTAAGTTGATAGCTGTACATGCTGGTTTAGAGAAAGGGAA 675
Query 699 TAACGTAGAAGAACAACTGAAGCTTTTGAGAGCTAAAGACACTAGCATCTCAAAA-ATAC 757
||||||||||||||| || || || ||||||||||||||||| ||||| || || ||||
Sbjct 676 TAACGTAGAAGAACAGCTTAAACTATTGAGAGCTAAAGACACAAGCAT-TCCAAGGATAC 734
Query 758 AACAT---C-T--AAGTGGTAGGAAAAACGTTTGGGACATCCCACAGGAGCTGGATGATA 811
||||| | | || |||| |||||| ||||||||||||||||| ||| || |||||||
Sbjct 735 AACATGAACCTCTAACTGGTCGGAAAACCGTTTGGGACATCCCACGGGAACTAGATGATA 794
Query 812 AACATACTGTTGTTGTTAGCGGGCACCATGGAAAACTTCACATCGATGG-TATGAGATTG 870
|||| ||| || | |||||||| ||||| || ||||||||||| ||||| | | ||||||
Sbjct 795 AACAGACTCTTATAGTTAGCGGCCACCACGGGAAACTTCACATTGATGGCT-TAAGATTG 853
Query 871 ATCATCGATGAAGGCGGTGGATTC-CCGGATAAACCAGTGGCAGCAATTGTTCTTCCTTC 929
|||||||||||||||||||||| | ||| ||||||| |||| |||||||||||||||||
Sbjct 854 ATCATCGATGAAGGCGGTGGATACGCCG-ATAAACCCTTGGCTGCAATTGTTCTTCCTTC 912
Query 930 CAAGAAGATTATCCGTGACACCGATAA-TTT 959
|||||||||||||| ||||||||||| |||
Sbjct 913 TAAGAAGATTATCCGCGACACCGATAACTTT 943
Score = 300 bits (162), Expect = 2e-80
Identities = 239/275 (87%), Gaps = 9/275 (3%)
Strand=Plus/Plus
Query 46 CAAAAACCACGAACGGTGATCTGCGTCGGAGACATCCATGGATACATATCAAAGCTCAAT 105
|||||||||||||| |||||||| |||||||||||||||||| |||||||| ||| |||
Sbjct 47 CAAAAACCACGAACTGTGATCTGTGTCGGAGACATCCATGGAAACATATCACTGCTTAAT 106
Query 106 AACCTCTGGCTTAATCTCCAATCTGCCATCGACCCATCAGATTTCAGCTCAGCTCTCGTC 165
|| |||||||||||||| ||||| | |||||| | ||||||||||| |||||||||||||
Sbjct 107 AAACTCTGGCTTAATCTTCAATCCGACATCGAACAATCAGATTTCAACTCAGCTCTCGTC 166
Query 166 ATATTCCTTGGCGATTACTGCGATCGTGGACCGGAGACTCGAAAAGTCATCGATTTCTTA 225
|| ||||| |||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 167 ATCTTCCTCGGCGATTACTGCGATCGTGGACCGGAGACTAAAAAAGTCATCGACTTCTTG 226
Query 226 ATCTCTCTGCCGGAGAAACATCCCGATCAAACT-CA------TGTCTTTCTCGCCGGGAA 278
|||||| ||||||||||||||||||| || ||| || ||||||||| ||||| ||
Sbjct 227 ATCTCTTTGCCGGAGAAACATCCCGAGCAGACTGCAGACCCATGTCTTTCTTGCCGGAAA 286
Query 279 CCATGACTTTGCCTTCT-CTGGGTTCTTAGGTTTG 312
||| |||||||| || | |||||||||| ||||||
Sbjct 287 CCACGACTTTGCTTT-TGCTGGGTTCTTGGGTTTG 320
> Ahg945815 jgi|Araly1|945815|scaffold_702044.1
Length=751
Score = 699 bits (378), Expect = 0.0
Identities = 443/474 (93%), Gaps = 5/474 (1%)
Strand=Plus/Plus
Query 39 AATGGCGCAAAAACCACGAACGGTGATCTGCGTCGGAGACATCCATGGATACATATCAAA 98
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 20 AATGGCGCAAAAACCACGAACGGTGATCTGCGTCGGAGACATCCATGGATACATATCGAA 79
Query 99 GCTCAATAACCTCTGGCTTAATCTCCAATCTGCCATCGACCCATCAGATTTCAGCTCAGC 158
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 80 GCTCAATAACCTCTGGCTTAATCTCCAATCCGCCATCGACCCATCAGAATTCAGCTCAGC 139
Query 159 TCTCGTCATATTCCTTGGCGATTACTGCGATCGTGGACCGGAGACTCG-AAAAGTCATCG 217
||||||||| ||||| ||||||||||||||||||||||| ||||| || |||||||||||
Sbjct 140 TCTCGTCATCTTCCTCGGCGATTACTGCGATCGTGGACCAGAGAC-CGGAAAAGTCATCG 198
Query 218 ATTTCTTAATCTCTCTGCCGGAGAAACATCCCGATCAAACTCATGTCTTTCTCGCCGGGA 277
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 199 ATTTCTTAATCTCTCTACCGGAGAAACATCCCGATCAAACTCACGTCTTTCTCGCCGGGA 258
Query 278 ACCATGACTTTGCCTTCTCTGGGTTCTTAGGTTTGTTGCCTCGTCCTTCAGATGGATCTG 337
|||| ||||| ||||||||||||||||| ||||||||||| |||||||||||||| ||||
Sbjct 259 ACCACGACTTCGCCTTCTCTGGGTTCTTGGGTTTGTTGCCCCGTCCTTCAGATGGGTCTG 318
Query 338 ATTTGAAGGATACGTGGAAGGAGTACTCAAAA-AGTGAGGAGACAGAAGGATGGTATACA 396
|||||||||||||||||||||||||| | || ||||||| |||||||||||||| |
Sbjct 319 ATTTGAAGGATACGTGGAAGGAGTACG-AGGGTAGCGAGGAGAGAGAAGGATGGTATAGA 377
Query 397 GGTGAAGGGTTCGAAGATATGCATCTTCAAGGTAGAAGATGGGCTGGTAAAATTAAGGCT 456
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 378 GGTGAAGGGTTCGAGGATATGCATCTTCAAGGTAGGAGATGGGCTGGTAAAATTAAGGTT 437
Query 457 ACGTTCAATTCTGTGAAAGGGATGGCTTATAAAGGATCGATTTACGATGCTGGA 510
|||||||||||||||||||| ||||||||||| || |||||||||||| |||||
Sbjct 438 ACGTTCAATTCTGTGAAAGGCATGGCTTATAAGGGTTCGATTTACGAT-CTGGA 490
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45061287894
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5