BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G09980.1
Length=948
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478325 jgi|Araly1|478325|fgenesh2_kg.3__1026__AT3G09980.1 1568 0.0
> Ahg478325 jgi|Araly1|478325|fgenesh2_kg.3__1026__AT3G09980.1
Length=947
Score = 1568 bits (849), Expect = 0.0
Identities = 915/947 (97%), Gaps = 4/947 (0%)
Strand=Plus/Plus
Query 5 TTCAAAAAGAAAGCTCAGTTAGCTATTTTCTCTACCACAGAAGAATCTAGACCCagagag 64
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2 TTCAAAAAGAAAGCTCACTTAGCTATTTTCTCTACCACAGAAGAATCTAGACCCAGAGAG 61
Query 65 agagagagagagagagagagagatcagtaacgagagagtcaaagagaggagaTTTCAGTG 124
||||||||||| | || ||||||||| | |||||||||||||||||||||||||||||||
Sbjct 62 AGAGAGAGAGAAATAGTGAGAGATCAATTACGAGAGAGTCAAAGAGAGGAGATTTCAGTG 121
Query 125 AAGATGAAGGAGATGCAGGCAATAGAGACGTCGCAGCCGACGACGGTGGCTCCGGCGGTG 184
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 122 AAGATGAAGGAGATGCAGGCAATAGAGTCGTCGCAGTCGACGACGGTGGCTCCGGCGGTG 181
Query 185 CATAGCCGACAATTGGGAGCTCAGTTGTCGGGAAGTATGAGTTTCAGCAGCCAAATGTCG 244
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 182 CATAGCCGACAATTGGGAGCTCAGTTATCGGGAAGTATGAGTTTCAGCAGCCAAATGTCG 241
Query 245 AAGGAAGATGAGGAGATGTCTAGAACTGCGTTATCTGCGTTTAGAGCgaaagaagaagag 304
|| ||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 242 AAAGAAGACGAGGAGATGTCTAGGACTGCGTTATCTGCGTTTAGAGCGAAAGAGGAAGAG 301
Query 305 atcgagaagaagaagaTGGAGATTAGGGAAAGGGTTCAAGCTCAGCTTGGTCGTGTCGAA 364
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 302 ATCGAGAAGAAGAAGATGGAGATTAGGGAAAGGGTTCAAGCTCAGCTTGGTCGTGTTGAA 361
Query 365 GAAGAGACTAAGCGTCTTGCTTTGATCCGTGAGGAACTTGAAGGATTAGCTGATCCCATG 424
||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 362 GAAGAAACTAAGCGTCTTGCTTCGATCCGTGAGGAACTTGAAGGTTTAGCTGATCCCATG 421
Query 425 AGGAAAGAAGTTGCTATGGTTAGGAAGAAGATTGATTCTGTCAACAAAGAATTAAAGCCA 484
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 AGGAAAGAAGTTGCTTTGGTTAGGAAGAAGATTGATTCTGTCAACAAAGAATTAAAGCCA 481
Query 485 TTGGGCCATACAGTTCAGAAAAAGGAACGAGAGTACAAAGAAGCTCTTGAAGCATTCAAC 544
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 482 TTGGGGCATACAGTTCAGAAAAAGGAACGAGAGTACAAAGAAGCTCTTGAAGCATTCAAC 541
Query 545 GAAAAGAACAGGGAGAAGGTGCAGCTAATCACCAGGCTAATGGAGTTGGTGGGAGAAAGC 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 542 GAAAAGAACAGGGAGAAGGTGCAGCTAATCACCAGGCTAATGGAGTTGGTGGGAGAAAGC 601
Query 605 GAAAAGATGAGAATGAAGAAGCTGGAAGAGCTAAGCAAGAACATAGATTCTATACACTGA 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 602 GAAAAGATGAGAATGAAGAAGCTGGAAGAGCTAAGCAAGAACATAGATTCTATACACTGA 661
Query 665 CTTTGAATCCAAGACAGTACAAGAACTTCTTGGGCCAGAGATCATTCTCTGAGTGTTTTA 724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 662 CTTTGAATCCAAGACAGTACAAGAACTTCTTGGGCCAGAGATCATTCTCTGAGTGTTTTA 721
Query 725 ACTCTACGTTTAGGTTTGGTGGTGGTGAATGTAATTTATATTTTATAATCGTCGTGTGTT 784
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 722 ACTCTACGTTTAGGTTTGGTGGTGGTGAATGTAATTTATATTTTATAATCGTCGTGTGTT 781
Query 785 ATATTACTACTACAATTATTATCTTT-GTTAGGGGTTCTTGGAGAATTTATAAGTGTAAT 843
||||||||||||| |||||||||||| ||||||| ||||||||||||| ||||| |||||
Sbjct 782 ATATTACTACTACTATTATTATCTTTTGTTAGGGTTTCTTGGAGAATT-ATAAGGGTAAT 840
Query 844 GTGGtttttttAGGAAGTAACTTCAAAAAATACTCATCAAGACAGGTTTGTAACTAAACG 903
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 841 GTGGTTTTTTTAGGAAGTAACTTCAAAAAATACTCATCGAGACAGGTTTGTAACTAAACA 900
Query 904 cttcttcttct-ttt-ctctgaactatctttctctctttATTGTCCT 948
|||||| |||| ||| |||||||| || ||||||||||||||| |||
Sbjct 901 CTTCTTTTTCTCTTTTCTCTGAACCATTTTTCTCTCTTTATTGCCCT 947
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35187452391
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5