BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G09990.1 Length=1254 Score E Sequences producing significant alignments: (Bits) Value Ahg478326 jgi|Araly1|478326|fgenesh2_kg.3__1027__AT3G09990.1 1803 0.0 > Ahg478326 jgi|Araly1|478326|fgenesh2_kg.3__1027__AT3G09990.1 Length=1252 Score = 1803 bits (976), Expect = 0.0 Identities = 1170/1262 (93%), Gaps = 20/1262 (2%) Strand=Plus/Plus Query 1 ATGGATACTAGCATTCTAGCTGTGACGACCAATCCTAAGGGGAAAA-ACTATGCTCTTGC 59 ||||||||||||||| |||||| |||||||||||||| ||||||| ||| ||||||||| Sbjct 1 ATGGATACTAGCATTGTAGCTGCAACGACCAATCCTAA-GGGAAAATACTGTGCTCTTGC 59 Query 60 TGTTTGTTGGCTTCTTGGCG-TTGGATGCCTTTTAGCATGGAACAGTATGCTCACAATTG 118 |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| Sbjct 60 TGTTTGTTGGCTTCTTGG-GATTGGATGCCTTTTAGCATGGAACAGTATGCTCACAATTG 118 Query 119 TGGATTATTACGCTTATTTGTTCCCCTGGTATCATCCATCGAGA-ATCCTTACCATAATT 177 |||||||||||||||||||||||||| ||||||||||||||| | ||| ||||||||||| Sbjct 119 TGGATTATTACGCTTATTTGTTCCCCCGGTATCATCCATCGA-ATATCATTACCATAATT 177 Query 178 TATCAGTCATTTTCTATTGGAGCACTTAGTGTTCTTGTTCACAAAGAGGCAAGACTCAAT 237 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 178 TATCAGTCATTTGCTATTGGAGCACTTAGTGTTCTTGTTCACAAAGAGGCAAGACTCAAT 237 Query 238 ACCAGACGTCGAAATTTGTTTGGATATAGTCTTTTTTCCCTTGGTTCTCTTGCTGTCCTA 297 ||| |||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||| Sbjct 238 ACCCGACGTCGAAATTTGTTTGGATACAGTCTCTTTTCCCTTGGCTCTCTTGCTGTCCTA 297 Query 298 GTGTTAAATTTAGCTACTTCGGGGAGAGGAGGGATTGGCTCTTTCATTGGAGTATGTGTC 357 |||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 298 GTGTTAGATTTAGCTACTTCGGGAAGAGGAGGGATTGGCTCTTTCATTGGAGTTTGTGTC 357 Query 358 ATTAGTGCGGCGTTTGGTCTAGCGGATGCACATGTTTAT-GGTGGAATGATCGGAGATCT 416 ||||||||||| |||||||||| ||||||||||| || | ||||||||||| |||||||| Sbjct 358 ATTAGTGCGGCCTTTGGTCTAGGGGATGCACATG-TTCTCGGTGGAATGATTGGAGATCT 416 Query 417 TTCTATGATGACACCCGAGTTTCTTCAGTCGTTTCTAGCTGGCTTAGCTGCTTCAGGAGC 476 ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 417 TTCTATGATGACACCAAAGTTTCTTCAGTCGTTTCTAGCTGGCTTAGCTGCTTCAGGAGC 476 Query 477 ATTAACCTCTGGACTGAGGCTGGTCATAAAAGCAGCATTCAAAAACTCAAGGGATGGCCT 536 ||||||||| || ||||||||||||| ||||||||||||||||||||| ||||||||||| Sbjct 477 ATTAACCTCCGGCCTGAGGCTGGTCACAAAAGCAGCATTCAAAAACTCCAGGGATGGCCT 536 Query 537 TCGCAAAGGAGCTACTTTATTCTTTGCCATGTCTGCGTCGTTCGAGTTGGTTTGCGTTCT 596 |||||||||||||| ||||||||||||| ||||||||||||| |||||||||||||| || Sbjct 537 TCGCAAAGGAGCTATTTTATTCTTTGCCGTGTCTGCGTCGTTTGAGTTGGTTTGCGTCCT 596 Query 597 GTTATATGCATATGTATTTCCCAGGATACCGGTCGTGAAGTACTATCGCGCAAAGGCTAT 656 ||||||||||| ||||||||||||||| ||| ||||||||||||| || | | ||||||| Sbjct 597 GTTATATGCATTTGTATTTCCCAGGATTCCGATCGTGAAGTACTACCGGGGAGAGGCTAT 656 Query 657 CATTCAAGGATCGCG-AACTGTATG-GGCCGACCTTGCAGCT---GGAGGCATCCAAGT- 710 | | |||||| || | ||||||| | |||||||||||||||| ||||||| |||||| Sbjct 657 CCTCCAAGGAGCG-GAAACTGTA-GCGGCCGACCTTGCAGCTGGAGGAGGCACCCAAGTG 714 Query 711 GCAACCAATAACCCAGGACGAGGAAGCCTTAAGATATGATCATCGGCTAAACAAAGGAGA 770 || ||| ||| ||||||| ||||||| | |||||| || ||||||||||||| |||| Sbjct 715 GC-ACC---AACGCAGGACGTGGAAGCCCCACGATATGTTCGTCGGCTAAACAAAAGAGA 770 Query 771 CTTGATGTTACTGTACTCAGATCTTGCGGTTACCTTGTTCTTAGTGTATCTACTGACGTT 830 ||||||| |||| |||||||||||||| ||||||||||||| |||||| |||||||||| Sbjct 771 CTTGATGCTACTCTACTCAGATCTTGCAGTTACCTTGTTCTCGGTGTATGTACTGACGTT 830 Query 831 TAGCATTTTCCCTGGATTTCTATCGGAGGATACGGGAAAATACAGTTTAGGCGACTGGTA 890 |||||||||||||||||||||||||||||| ||||||||| |||||||||| |||||||| Sbjct 831 TAGCATTTTCCCTGGATTTCTATCGGAGGACACGGGAAAACACAGTTTAGGAGACTGGTA 890 Query 891 TGCACTAGTGTTGATAGCAGTGTTCAACGTGTCGGATTTGGTTGGGAGATACGTTCCCAT 950 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 891 TGCACTAGTGTTGATAGCAGTGTTCAACGTGTCGGATTTGGTTGGGAGATACGTTCCCGT 950 Query 951 GGTCAAGAAGTTGAAGATGAAGTCGAGGAAATGTCTCTTGATAACGTCATTGGGACGTCT 1010 ||||||||||||||||||||||||||||| | |||| |||||||| |||||||||||||| Sbjct 951 GGTCAAGAAGTTGAAGATGAAGTCGAGGAGAGGTCTTTTGATAACATCATTGGGACGTCT 1010 Query 1011 CTTGTTGATTCCAGCTTTCAACATCACAGGCATATATGGAAGCCAAGGCTGGATGATTTT 1070 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1011 CTTGTTGATTCCAGCTTTCAACATCACAGGCATATATGGAAGCCAAGGCTGGATGATTTC 1070 Query 1071 CTTGATGTCCGTTTTGGGATTAAGCAATGGATATTTGACTGTTTGTGTCATAACATCAGC 1130 ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1071 CTTGATGTCCGTTTTAGGATTTAGCAATGGATATTTGACTGTTTGTGTCATAACATCAGC 1130 Query 1131 CCCATATGATTTATTGGCACCGGAGCAAAATGCACTAGGAAACTTGTTGGTGTTATATAT 1190 | || ||||||||||||||||||||||||||||||||||||||||||||||||| | ||| Sbjct 1131 CACACATGATTTATTGGCACCGGAGCAAAATGCACTAGGAAACTTGTTGGTGTTCTTTAT 1190 Query 1191 TTGTGGAGGGATGTTTGCAGGAGTCGCTTGTGATTGGCTTTGGTTAGTTGGTAAAGATTG 1250 || ||| |||||||||| |||||||||||||||||||||||||||| ||||||||||||| Sbjct 1191 TTCTGGGGGGATGTTTGTAGGAGTCGCTTGTGATTGGCTTTGGTTAATTGGTAAAGATTG 1250 Query 1251 GT 1252 || Sbjct 1251 GT 1252 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 46853064993 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5