BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G10000.1
Length=1446
Score E
Sequences producing significant alignments: (Bits) Value
Ahg341138 jgi|Araly1|341138|fgenesh1_pg.C_scaffold_3000901 1956 0.0
> Ahg341138 jgi|Araly1|341138|fgenesh1_pg.C_scaffold_3000901
Length=1434
Score = 1956 bits (1059), Expect = 0.0
Identities = 1321/1444 (91%), Gaps = 32/1444 (2%)
Strand=Plus/Plus
Query 10 CATCAAAACCATCCACAGTACGGTATAGAACAACCATCTTCTCAATTCTCCTCTGATCTC 69
|||||||||||||||||||||||||||| |||||||||| ||| | || ||||||||| |
Sbjct 16 CATCAAAACCATCCACAGTACGGTATAGCACAACCATCTCCTC-A-TC-CCTCTGATCCC 72
Query 70 TTCGGCTTCAACCTCGTTTCAGCGCCGGACCAGCACCATCGTCTTCATTTCACCGACCAT 129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 73 TTCGGCTTCAACCTCGTTTCAGCGCCGGACCAGCACCATCGTCTTCATTTCACCGACCAT 132
Query 130 GAGATAAGTTTATTGCCACGTGGAATACAAGGGCTTACGGTGGCTGGAAACAACAGTAAC 189
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 133 GAGATAAGTTTCTTGCCACGTGGTATACAAGGGCTTACGGTGGCTGGAAACAACAGTAAC 192
Query 190 ACTATTACAACGATCCAGAGTGGTGGCTGTGTTGGTGGGTTTAGTGGCTTTACGGACGGC 249
|||| | | ||| || | || | ||||||||||||||||||||||||||||||||
Sbjct 193 ACTAATGTAGCGA-ACACA--AGT-G--GTGTTGGTGGGTTTAGTGGCTTTACGGACGGC 246
Query 250 GGAGGAACAGGGAGGTGGCCGAGGCAAGAGACGTTGATGTTGTTGGAGGTCAGATCTCGT 309
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 247 GGAGGAACAGGGAGGTGGCCGAGGCAAGAGACGTTGATGTTGTTGGAGGTCAGATCGCGT 306
Query 310 CTTGATCACAAGTTCAAAGAAGCTAATCAAAAGGGTCCTCTCTGGGATGAAGTTTCTAGG 369
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 307 CTTGATCACAAGTTCAAAGAAGCCAATCAAAAGGGTCCTCTCTGGGATGAAGTTTCTAGG 366
Query 370 ATTATGTCGGAGGAACATGGATACACTAGGAGTGGCAAGAAGTGTAGAGAGAAGTTCGAG 429
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 367 ATTATGTCGGAGGAACATGGATACACTAGGAGTGGCAAGAAGTGTAGAGAGAAGTTTGAG 426
Query 430 AATCTCTACAAGTACTATaaaaaaaCAAAAGAAGGCAAATCCGGTCGGCGACAAGATGGT 489
||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 427 AATCTCTACAAGTACTATAAAAAGACAAAAGAAGGCAAAGCCGGTCGGCGACAAGATGGT 486
Query 490 AAAAACTATAGATTTTTCCGGCAGCTTGAAGCGATATACGGCGAATCCAAAGACTCGGTT 549
||||||||||||||||||||||||||||||||||| ||||| ||| |||||||| |||||
Sbjct 487 AAAAACTATAGATTTTTCCGGCAGCTTGAAGCGATCTACGGTGAAGCCAAAGACCCGGTT 546
Query 550 TCTTGCTATAACAACACGCAGTTCATAATGACCAATGCTCTTCATAGTAATTTCCGCGCT 609
||||||||||||||| |||||||||||||||||||||||||||||||| || || ||||
Sbjct 547 TCTTGCTATAACAACTCGCAGTTCATAATGACCAATGCTCTTCATAGT--TT-CCACGCT 603
Query 610 TCTAACATTCATAACA-TCGTCCCTCATCATCAGAATCCCTTGATGACCAATACCAATAC 668
|| ||| ||||||||| | ||||||||||||||||| ||||||||||||||||| | |
Sbjct 604 TCGAACCTTCATAACAGT-GTCCCTCATCATCAGAAGCCCTTGATGACCAATAC---T-C 658
Query 669 TCAAAGTCAAAGCCTTAGCATTTCTAACAATTTCAACTCCTCCTCCGATTTGGATCTAAC 728
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 659 --AAAGTCAAAGCCTTAGCATTTCTAACAATTTCAACTCCTCCTCTGAGTTGGATCTAAC 716
Query 729 TTCTTCCTCTGAAGGAAACGAAACTACTAAAAGAGAGGGGATGCATTGGAAGGAAAAGAT 788
||| |||||||||||||||||| |||||| |||||||| |||| | |||||||||| |||
Sbjct 717 TTCCTCCTCTGAAGGAAACGAATCTACTAGAAGAGAGGAGATGAACTGGAAGGAAAGGAT 776
Query 789 CAAGGAATTCATTGGTGTTCATATGGAGAGGTTGATAGAGAAGCAAGATTTTTGGCTTGA 848
||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 777 TAAGGACTTCATCGGTGTTCATATGGAGAGGTTGATAGAGAAGCAGGATTTTTGGCTTGA 836
Query 849 GAAGTTGATGAAGATTGTGGAAGACAAAGAACATCAAAGGATGCTGAGAGAAGAGGAATG 908
|||||||||||||| |||||||||||||||| ||||||||||| ||||||||||| ||||
Sbjct 837 GAAGTTGATGAAGACTGTGGAAGACAAAGAAAATCAAAGGATGATGAGAGAAGAGAAATG 896
Query 909 GAGAAGGATTGAAGCGGAAAGGATCGATAAGGAACGTTCGTTTTGGACAAAAGAGAGGGA 968
|| ||||||||||| || |||||||||||||||||||| |||||||||||| ||||||||
Sbjct 897 GAAAAGGATTGAAGTGGCAAGGATCGATAAGGAACGTTTGTTTTGGACAAAGGAGAGGGA 956
Query 969 GAGGATTGAAGCTCGGGATGTTGCGGTGATTAATGCCTTGCAGTACTTGACGGGAAGGGC 1028
|||||| ||||||||||||||||||||||| | |||||||||||||||||||||| ||
Sbjct 957 GAGGATGGAAGCTCGGGATGTTGCGGTGATCGAGGCCTTGCAGTACTTGACGGGAAAAGC 1016
Query 1029 ATTGATAAGGCCGGATTCTTCGTCTCCTACAGAGAGGATTAATGGGAAT-GGAAGCGATA 1087
||||||||||||||| ||||| || |||| ||||||||||| || || ||||||| |
Sbjct 1017 ATTGATAAGGCCGGAATCTTCTTCCCCTATTGAGAGGATTAACGG-AAGCGGAAGCGGTC 1075
Query 1088 AAATGATGGCTGATAATGAATTTGCTGATGAAGGAAATAAGGGCAAGATGGATAAAAAAC 1147
||||||||| ||| ||||||| ||||||||||| ||||||||||||| |||| |||||||
Sbjct 1076 AAATGATGGTTGAAAATGAATATGCTGATGAAGAAAATAAGGGCAAGGTGGAGAAAAAAC 1135
Query 1148 AAATGAATAAGAAAAGGAAGGAGAAATGGTCAAGCCACGGAGGGAATCATCCAAGAACCA 1207
||||||||||||||||||||||||||||||||| |||||| | ||||||||| |||| ||
Sbjct 1136 AAATGAATAAGAAAAGGAAGGAGAAATGGTCAAACCACGGTGTGAATCATCCGAGAATCA 1195
Query 1208 AAGAGAATATGATGATATACAACAATCAAGAAACTAAGA-TTAATGATTTTTGTCGAGAT 1266
|||||||||||||||||||||||||||||||||||| || ||||||||| | ||| ||||
Sbjct 1196 AAGAGAATATGATGATATACAACAATCAAGAAACTA-GAATTAATGATTGTAGTCTAGAT 1254
Query 1267 GATGACCAATGCCATCAT--G-AAGGTTACTCACCTTCAAACTCCAAGAACGCAGGAA-C 1322
||||| ||| ||||||| | ||||||| |||||||||||||||||| | ||||| |
Sbjct 1255 GATGAGCAAGGCCATCACCAGGAAGGTTATTCACCTTCAAACTCCAAGGA---AGGAAAC 1311
Query 1323 TCCGAGCTGCAGCAATGCCATGGCAGCTAGTACAAAGTGCTTTCCATTGCTTGAAGGAGA 1382
|||||| |||||| || |||||| ||||||||||||||||||||||||| |||||||||
Sbjct 1312 -CCGAGCCGCAGCATTGTCATGGCGGCTAGTACAAAGTGCTTTCCATTGCCTGAAGGAGA 1370
Query 1383 AGGAGATCAGAACTTGTGGGAGGGTTATGGTTTGAAGCAAAGGAAAGAAAATAATCATCA 1442
|||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 1371 TGGAGATCAAAACTTGTGGGATGGTTATGGTTTGAAGCTAAGGAAAGAAAATAATCATCA 1430
Query 1443 GTAA 1446
||||
Sbjct 1431 GTAA 1434
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54088147900
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5