BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G10020.1
Length=724
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928691 jgi|Araly1|928691|scaffold_301148.1 713 0.0
> Ahg928691 jgi|Araly1|928691|scaffold_301148.1
Length=490
Score = 713 bits (386), Expect = 0.0
Identities = 444/473 (94%), Gaps = 0/473 (0%)
Strand=Plus/Plus
Query 90 AAGATGCAGGCGGTATCAGTTGATGAAACCAAAAACACGGTGGTGCTACGGGCGGAGCAC 149
||||||||| ||||||| ||||| ||||||||||||||||||||| ||||||||| ||||
Sbjct 18 AAGATGCAGACGGTATCCGTTGACGAAACCAAAAACACGGTGGTGATACGGGCGGTGCAC 77
Query 150 AAGAATGAAGAAGGCCGGAAATCTGTTGATAAGTTCGAAGTGAAGACACGTAATCCGGAG 209
||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 78 AAGAACGAAGAAGGTCGGAAATCTGTTGATAAGTTCGAACTGAAGACACGTAATCCGGAG 137
Query 210 ACGATCAAGAGCGTTGAGCGGAAGCTTATGGAGAAAGGTGTTCAACGGATGGATCGTCAT 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 138 ACGATCAAGAGCGTTGAGCGGAAGCTTATGGAGAAAGGTGTTCAACGGATGGATCGTCAT 197
Query 270 CCTTCCGATGGGATTCCTCTCAGGCGACCACCATCGAAGTCAGGTCACGGCGGGAAGTAC 329
||||||||||||||||||||||||||||| ||| ||||||| |||||||| || ||||||
Sbjct 198 CCTTCCGATGGGATTCCTCTCAGGCGACCTCCACCGAAGTCTGGTCACGGTGGTAAGTAC 257
Query 330 ACGTGGGAAGGACCTGATCGGATGGAGGATTACGAGATGCAGCCGGATCCACCGGCGATG 389
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 258 ACGTGGGAGGGACCAGATCGGATGGAGGATTACGAGATGCAGCCGGATCCACCGGCGATG 317
Query 390 GATGAAGGAGATCCTAATTACGACGAGGAACAGGTGAAGAAGAGTGGTGATGACGTGGCG 449
|||||||||||||||||||||||||||||||| | |||||||| || |||||||||||||
Sbjct 318 GATGAAGGAGATCCTAATTACGACGAGGAACAAGCGAAGAAGATTGATGATGACGTGGCG 377
Query 450 GTTGAGCTTGTGAAAGGAGAGGTTGAGGTGGCTAAGGAGGCTCCGGCTGGTGTTGCTAGG 509
|||||||||||||||||||| ||||||||||| ||||| || ||||||||||| || |||
Sbjct 378 GTTGAGCTTGTGAAAGGAGATGTTGAGGTGGCGAAGGAAGCGCCGGCTGGTGTGGCGAGG 437
Query 510 GTTGAGGTTGATCCTCGCTTGGTCGGTCGTTGAGAGTTTGATAGAGGAGGAAG 562
|||||||||||||| ||||||||| ||||||||| ||||||||||||| ||||
Sbjct 438 GTTGAGGTTGATCCACGCTTGGTCAGTCGTTGAGTGTTTGATAGAGGATGAAG 490
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26647918983
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5