BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G10030.1
Length=1997
Score E
Sequences producing significant alignments: (Bits) Value
Ahg317804 jgi|Araly1|317804|fgenesh1_pm.C_scaffold_3000820 2612 0.0
> Ahg317804 jgi|Araly1|317804|fgenesh1_pm.C_scaffold_3000820
Length=1626
Score = 2612 bits (1414), Expect = 0.0
Identities = 1563/1634 (96%), Gaps = 13/1634 (1%)
Strand=Plus/Plus
Query 115 ATGGCGTCGTGTGATGACGATTTCTCTCTACTTGGAGACGATCAGTCAAACCCTAATCAA 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGTCGTGTGATGACGATTTCTCTCTACTTGGAGACGATCAGTCAAACCCTAATCAA 60
Query 175 CATCACCACCACCACCAAGTTCTTCATCACACGCCCTACGCTCCTAGACGATTCAACCCG 234
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 61 CATCACCACCACCACCAAGTTCTTCATCACACCCCCTACGCTCCTAGACGATTCAACCCG 120
Query 235 AAACCATCGAATCAGATCCTTTTACCGCATCACCAGAGGAACGGCGACGAGGACGACGAG 294
|| |||||||||||||||| |||||| ||||||||||||||||| |||||||||||||||
Sbjct 121 AAGCCATCGAATCAGATCCATTTACCACATCACCAGAGGAACGGTGACGAGGACGACGAG 180
Query 295 AACGATGTCGTTGTAGAAGCGTCTTCTGCTTTCCACGGTCACGGTGTTAATCCTTTCAC- 353
||||||||||||||||| |||||||||||||| |||||| ||||||||||||||| |
Sbjct 181 AACGATGTCGTTGTAGAGGCGTCTTCTGCTTTTCACGGTGTTGGTGTTAATCCTTTCTCT 240
Query 354 GGCGGACGAAAATTCGAATCCGTATGATGATAATAACGCAGCTGTAGACGAAGACGAAGA 413
|| ||||||||||||||||||||||||||||||||||||| || | | ||||||||
Sbjct 241 GG-TGACGAAAATTCGAATCCGTATGATGATAATAACGCAG--GT-GTC---GACGAAGA 293
Query 414 CGAAGATCTCGGTGCCAACAGATCTAGAATCGGAGGTGTTCGTGTTGAGAAGAGGCAGAG 473
||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 294 CGAAGATCTCGATGCCAACAGATCCAGAATCGGAGGTGTTCGTGTTGAGAAGAGGCAGAG 353
Query 474 TCAGGAGGAGCTAAGTGACGGAGGAACAACAAATGGCGGTGAGATTACTCCCTACGGTAG 533
|||||||||||||||||||||||||||||| ||||| |||||||| || || ||||||||
Sbjct 354 TCAGGAGGAGCTAAGTGACGGAGGAACAACGAATGGTGGTGAGATCACACCTTACGGTAG 413
Query 534 CTTCAAGAGACCGAGGACTTCGTCTTCCTCAGCTGGTGAGTATAGGAAGGATAGAGAAGA 593
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 414 CTTCAAGAGGCCGAGGACTTCGTCTTCCTCAGCTGGTGAGTATAGGAAGGATAGGGAAGA 473
Query 594 GTGGAGTGATGCGGCGATTGCGTGTTTGTTAGATGCGTATTCGGATAAGTTCACACAGCT 653
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 474 GTGGAGCGATGCGGCGATCGCGTGTTTGTTAGATGCGTATTCGGATAAGTTCACACAGCT 533
Query 654 TAATCGAGGGAATCTCCGGGGAAGAGATTGGGAAGAGGTTGCTTCATCGGTGAGTGAGAG 713
||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||
Sbjct 534 TAATCGAGGGAATCTTCGGGGAAGGGACTGGGAAGAGGTTGCTTCATCGGTGAGTGAGAG 593
Query 714 GTGTGAAAAGCTGAGTAAGAGTGTAGAACAGTGTAAGAACAAGATTGATAATCTCAAGAA 773
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 594 GTGTGAAAAGCTGAGTAAGAGTGTAGAACAGTGTAAGAACAAGATTGATAATCTCAAGAA 653
Query 774 GAGGTATAAGCTTGAAAGGCATAGAATGAGCAGTGGTGGAACAGCAGCTAGTCACTGGCC 833
|||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 654 GAGGTATAAGCTTGAAAGGCATAGGATGAGCAGTGGTGGAACATCAGCTAGTCACTGGCC 713
Query 834 TTGGTTTAAGAAGATGGAAGATATTGTGGGCAATTCATTAGCCTTGAAAGGCGCGTCTGA 893
||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 714 TTGGTTTAAGAAGATGGAAGATATTGTGGGCAATTCATTGGCCACGAAAGGCGCGTCTGA 773
Query 894 TGAAGATAGAAGCGGAAGCTCAATGGGGAATACTGTGAAGCCAGCTAGAAGGTATCCTCT 953
|||||||||||| |||||||||||||||||||||||||||||||| || |||||||| ||
Sbjct 774 TGAAGATAGAAGTGGAAGCTCAATGGGGAATACTGTGAAGCCAGCGAGGAGGTATCCCCT 833
Query 954 GGTAACATATAACCCAGGAGTTCAGATTAATAACGTCAAATCAAAGGCTACATCAAACCC 1013
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 834 GGTAACATATAACCCTGGAGTTCAGATTAATAACGTCAAATCCAAGGCTACATCAAACCC 893
Query 1014 TAGATGGCGAAGAGTGGTTCTAAAAATCAGTGGTGCAGCTCTTGCCTGCACCGGTCCTAA 1073
|||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||
Sbjct 894 AAGATGGCGAAGAGTGGTTTTGAAAATCAGTGGTGCAGCTCTTGCCTGCACGGGTCCTAA 953
Query 1074 TAACATTGATCCAAAGGTAATCAATCTGATTGCAAGAGAAGTTGCAATGGCTTGTCGTCT 1133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 954 TAACATTGATCCAAAGGTAATCAATCTGATTGCAAGAGAAGTTGCAATGGCTTGTCGTCT 1013
Query 1134 TGGTGTAGAGGTAGCGATAGTTGTTGGGAGTCGGAACtttttttGTGGCAGCACATGGGT 1193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 TGGTGTAGAGGTAGCGATAGTTGTTGGGAGTCGGAACTTTTTTTGTGGCAGCACATGGGT 1073
Query 1194 AACTGCCACTGGTTTGGATAGAACCACTGCATATCATATAAGTATGATGGCGTCTGTGAT 1253
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1074 AACTGCCACTGGTTTGGATAGAACCACTGCATATCATATCAGTATGATGGCATCTGTGAT 1133
Query 1254 GAACTCTGCTTTACTTCAATCGTCCCTGGAGAAAATAGGGGTGCAGGCACGGTTACAAAC 1313
||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||
Sbjct 1134 GAACTCTGCTTTACTTCAATCATCCCTGGAGAAGATAGGGGTTCAGGCACGGTTACAAAC 1193
Query 1314 TGCAATATCGGTTCAGGGTGTCGGGGAGCCTTACAATCGTCAACGAGCCACCCGGCATCT 1373
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1194 TGCAATATCGGTTCAGGGTGTTGGGGAGCCTTACAATCGTCAACGAGCCACCCGGCATCT 1253
Query 1374 AGATAAGGGAAGAGTGGTAATATTTGGTGGCATCGGTGCCACGCTTGGAAATCCACTTTT 1433
||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||| ||
Sbjct 1254 AGATAAGGGAAGAGTAGTAATATTTGGTGGAATCGGTGCAACGCTTGGAAATCCACTCTT 1313
Query 1434 ATCATCTGATGCATCTGCAGCCCTTCGAGCTATAGACATCAATGCGGAGGCAGTGGTGAA 1493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1314 ATCATCTGATGCATCTGCAGCCCTTCGAGCTATAGACATCAATGCGGAGGCAGTGGTGAA 1373
Query 1494 AGGAACAAACGTTGATGGTGTTTATGACTGTCATTCACAAGATAGTAACGTGACATTTGA 1553
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1374 AGGAACAAACGTTGATGGTGTTTATGACTGCCATTCACAAGATAGTAACGTGACATTTGA 1433
Query 1554 GCACATATCATTTCAAGATTTGGCTTCTAGAGGTCTTACGTCAATGGATACAATGGCCCT 1613
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1434 GCACATATCATTTCAAGATTTGGCTTCTAGAGGTCTTACGTCAATGGATACAATGGCCCT 1493
Query 1614 TAACTTTTGTGAAGAGAACAGCATTCCAG---TTGTGGTATTTAACTTTCTGGAAGCTGG 1670
|||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 1494 TAACTTCTGTGAAGAGAACAGCATCCCAGCAGTTGTGGTATTTAACTTTCTGGAAGCTGG 1553
Query 1671 GAACATCACAAAAGCTTTGTGCGGAGAACAAGTGGGTACTTTGATCGATAGAAGC-GGAA 1729
||||||||||||||| || |||||||||||||||||||||||||||||||||| | ||||
Sbjct 1554 GAACATCACAAAAGCGTTATGCGGAGAACAAGTGGGTACTTTGATCGATAGAA-CTGGAA 1612
Query 1730 GGGGCGTGAGTTAG 1743
|||| |||||||||
Sbjct 1613 GGGGTGTGAGTTAG 1626
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75075872895
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5