BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G10040.1
Length=1657
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478332 jgi|Araly1|478332|fgenesh2_kg.3__1033__AT3G10040.1 2242 0.0
> Ahg478332 jgi|Araly1|478332|fgenesh2_kg.3__1033__AT3G10040.1
Length=1613
Score = 2242 bits (1214), Expect = 0.0
Identities = 1521/1657 (92%), Gaps = 69/1657 (4%)
Strand=Plus/Plus
Query 10 AACATCTTCAACACAAACTAAACAAAACTTAAAAGTAAGAACTCGAAGATACTGTACTTA 69
||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 1 AACTTCTTCAACACAAACTAAACAAAACTCAAAAGTAAGAACTCGAAGATACTGTAGTTA 60
Query 70 CAAATTCCTGTCGGAATTCTCTTACTTCGTCGGAAA-TTCGAAATCTGGGTTTGTGGGAT 128
||||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 61 CAAATTCTTGTCGGAATTCTCTTACTTGGTCGGAAATTTCGAAATCTGGGTTTGTGGGAT 120
Query 129 TCCGTGTTGATTTATCTACCATTGTTTCCAAGTTTC-AATTTTTTATCCAATTTAGGGTT 187
| ||||||||||||||||| ||||||||||| |||| |||||| | | ||||||||||||
Sbjct 121 T-CGTGTTGATTTATCTACTATTGTTTCCAATTTTCAAATTTTCT-T-CAATTTAGGGTT 177
Query 188 CAGTGTTTGATGGAATCGAATGTGATGTTCTCTGGGTTTAGTCCAAGAATGTTGAGCTTA 247
||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 178 CAGAGTTTGATGGAATCGAATGTGATGTTCTCTGGGTTTAGCCCAAGAATGTTGAGCTTA 237
Query 248 GAAATGCCGCAAAATCCACCAAATCCCCAAAATTCAATTCAGTTCCAGCATCCTCATCCT 307
||||||||||||||||||| |||| || | ||| | | ||||||||||||||||||
Sbjct 238 GAAATGCCGCAAAATCCACAAAAT--CC--AGTTC-A---A-TTCCAGCATCCTCATCCT 288
Query 308 TACACCACCTCCGGCGACCAACAAACTCAGCCGCCGATAAAATCCTTATACCCATACGCC 367
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 289 TACACCACCTCCGGCGACCAACAAACTCAGCCGCCGATGAAACCCTTATACCCATACGCC 348
Query 368 TCAAAACCCAAACAAATGTCACCCATTAGCGGTGGCGGTTGCGACGACGAGGATCGCGGG 427
||||||||||||||| |||||||||| ||||||||| | |||||||||| |||||||||
Sbjct 349 TCAAAACCCAAACAATTGTCACCCATAAGCGGTGGC-G--GCGACGACGAAGATCGCGGG 405
Query 428 TCGGGTTCCGGATCCGGTTGCAACCCTGAAGACAGCGCGGGAACTGACGGGAAGAGGAAA 487
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 406 TCGGGTTCCGGATCCGGTTGCAACCCTGAAGACAGCGCGGGAACCGACGGGAAGAGGAAA 465
Query 488 TTGTCACAATGGCATAGAATGAAATGGACGGATACAATGGTTAGGCTTTTGATCATGGCG 547
||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 466 TTGTCTCAATGGCATAGAATGAAATGGACGGATACAATGGTTCGTCTTTTGATCATGGCG 525
Query 548 GTTTTCTACATCGGTGACGAAGCTGGTTTAAACGATCCAGTCGACGCCAAGAAAAAGACC 607
|||||||||||||| |||||||||||||||||||||||| | |||||||||||||||| |
Sbjct 526 GTTTTCTACATCGGCGACGAAGCTGGTTTAAACGATCCAATTGACGCCAAGAAAAAGA-C 584
Query 608 GGCGGTGGCGGTGGCGGCGGAGGAGGAGGAGGGATGTTGCAGAAGAAAGGGAAGTGGAAA 667
| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 585 --C---GGCGGTGGCGGC------GGAGGAGGGATGTTGCAGAAGAAAGGGAAGTGGAAA 633
Query 668 TCAGTGTCGAGAGCTATGGTGGAGAAAGGTTTCTCTGTGTCACCACAACAATGTGAAGAC 727
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 634 TCAGTGTCGAGAGCTATGGTGGAGAAAGGTTTCTCTGTGTCGCCACAACAATGTGAAGAC 693
Query 728 AAGTTCAATGATTTGAACAAGAGGTACAAGAGAGTTAACGATATTCTTGGTAAAGGAATC 787
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 694 AAGTTCAATGATTTGAACAAGAGGTACAAGAGAGTTAACGACATTCTTGGTAAAGGAATC 753
Query 788 GCTTGTCGTGTCGTTGAGAATCAAGGATTGTTAGAGAGTATGGATCATTTGACTCCGAAG 847
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 754 GCTTGTCGTGTCGTAGAGAATCAAGGATTGTTAGAGAGTATGGATCATTTGACTGCGAAG 813
Query 848 TTGAAAGATGAAGTCAAGAAGTTGCTTAATTCTAAGCATCTTTTCTTTAGAGAGATGTGT 907
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 814 TTGAAAGATGAAGTCAAGAAGTTGCTTAATTCTAAGCATCTTTTCTTTAGAGAGATGTGT 873
Query 908 GCTTATCATAATAGTTGTGGTCATCTTGGTGGTCATGACCAACAACCACCGCAACAGAAT 967
||||||||||||||||||||||||||||||||||| || | ||||||||||||||||||
Sbjct 874 GCTTATCATAATAGTTGTGGTCATCTTGGTGGTCACGA-C--CAACCACCGCAACAGAAT 930
Query 968 CCTATTTCGATTCCGATTCCGAGTCAGCAGCAGAACTGTTTTCACGCGGCGGAAGCAGGG 1027
| ||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 931 -C-----CGATTTCGATTCCGAGT---CAGCAGAACTGTTTTCACGCGGCGGAAGCAGGG 981
Query 1028 AAAATGGCGAGAATTGCGGAGAGGGTGGAGGTGGAGGAGGAAGTAGAGTCTGATATGGCG 1087
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 982 AAAATGGCGAGAATTGCGGAGCGTGTGGAGGTGGAGGAGGAAGTAGAGTCTGATATGGCG 1041
Query 1088 GAGGATTCGGAGTCAGAGATGGAGGAATC-----A-GA---GGAAGAAGAGACGAGGAAG 1138
| |||||||||||| |||||||||||||| | || |||||||||||||||||||
Sbjct 1042 GGGGATTCGGAGTCTGAGATGGAGGAATCAGAGGAGGAGGTGGAAGAAGAGACGAGGAAG 1101
Query 1139 AAGCGGAGGATATCGACGGCGGTGAAGAGGTTGAGGGAAGAAGCGGCAAGTGTAGTGGAA 1198
|||| ||||||||| |||||||||||| ||||||||||||||||| | |||||||||||
Sbjct 1102 AAGCAGAGGATATCAACGGCGGTGAAGCGGTTGAGGGAAGAAGCGACGCGTGTAGTGGAA 1161
Query 1199 GATGTTGGGaagagtgtgtgggagaagaaagagtggataaggagaaagatgttggagatt 1258
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1162 GATGTTGGGAAGAGCGTGTGGGAGAAGAAAGAGTGGATGAGGAGAAAGATGTTGGAGATT 1221
Query 1259 gaggagaagaagatTGGGTATGAGTGGgaaggagtggagatggagaagcagagagtgaag 1318
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1222 GAGGAGAAGAAGATTGGGTATGAGTGGGAAGCAGTGGAGATGGAGAAGCAGAGAGTGAAG 1281
Query 1319 tggatgagatataggagcaagaaagagagagagatggagaagGCTAAGCTTGACAATCAG 1378
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1282 TGGATGAGATATAGAAGCAAGAAGGAGAGAGAGATGGAGAAGGCTAAGCTTGACAATCAG 1341
Query 1379 AGACGGAGGCTTGAGACGGAGAGGATGATTCTCA-TGTTACGGCGGAGTGAAATTGAGTT 1437
|||||||||||||||||||||||||| |||| | | |||||||||||||| || |||||
Sbjct 1342 CGACGGAGGCTTGAGACGGAGAGGATGGTTCTGAAT-TTACGGCGGAGTGAGATGGAGTT 1400
Query 1438 GAATGAGTTACAGTCTTCGGGTACACGGGTTGACCCGAGTTCCGCTAAGGGGTGAT-GCT 1496
||||||||||||||||||||||| || ||||||||||||||||||||||||||||| | |
Sbjct 1401 GAATGAGTTACAGTCTTCGGGTAAACAGGTTGACCCGAGTTCCGCTAAGGGGTGATCG-T 1459
Query 1497 GATTAGTATTT-AG-GATTAGAGATTTTTTACAACTTTGTAGTTTCTAATGT------T- 1547
||||||| ||| | ||||||| ||||| | || ||| ||||||||||||| |
Sbjct 1460 GATTAGTGTTTCACAGATTAGAAATTTTAGA-AATTTT-TAGTTTCTAATGTGGAGGATG 1517
Query 1548 --AGGATTCTCACGTTTTAGTGACATTAGGCAGTAAATTAAA-TCTTAAAAGTATGTACT 1604
|||||||||||||||| | |||| || ||| ||| |||| |||| |||||||| |||
Sbjct 1518 CTAGGATTCTCACGTTTTGG-GACAGTAATCAGCAAACTAAAATCTTTAAAGTATGGACT 1576
Query 1605 ATTGTAGACAAAAGGTCTTTAATCAGCAAATTGATTA 1641
|||||||||| ||||||||||||||||||||||||||
Sbjct 1577 ATTGTAGACAGAAGGTCTTTAATCAGCAAATTGATTA 1613
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62125189595
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5