BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G10070.1
Length=1952
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478335 jgi|Araly1|478335|fgenesh2_kg.3__1036__AT3G10070.1 3049 0.0
> Ahg478335 jgi|Araly1|478335|fgenesh2_kg.3__1036__AT3G10070.1
Length=1939
Score = 3049 bits (1651), Expect = 0.0
Identities = 1861/1959 (95%), Gaps = 27/1959 (1%)
Strand=Plus/Plus
Query 1 ACATTCACAACCTTTTCATGGATCAGCCACGGCAAAGCTCGACGGCGTCTCAGCCACCGG 60
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 ACATTCACAACCTTCTCATGGATCAGCCACGGCAAAGCACGACGGCGTCTCAGCCACCGG 60
Query 61 AAACACCTCCTCAGCCGTCGGA-T-----TCGAAACCATCGACTTTAACACAGATTCAAC 114
||||||| |||||||||||||| | ||||||||| |||||||||||||||||||||
Sbjct 61 AAACACCGCCTCAGCCGTCGGATTCAGCATCGAAACCAGCGACTTTAACACAGATTCAAC 120
Query 115 CAACGCCTTCCACAAATCCGAGTCCCTCCTCCGTTGTTTCCTCTATTCCCTCTTCCCCAG 174
|| ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 121 CACCGCCTTCCACAAATCCGAGTCCCACCTCCGTTGTTTCCTCTATTCCTTCTTCCCCAG 180
Query 175 CTCCACAATCACCATCGCTCAATCCAAACCCTAATCCTCCTCAATACACGCGTCCGGTGA 234
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 181 CTCCACAATCACCATCGCTCAATCCAAACCCTAATCCTCCTCAATACGCGCGTCCGGTGA 240
Query 235 CATCTCCGGCGACGCAACAGCAGCAACATCTCTCCCAGCCTTTAGTACGGCCGCCTCCGC 294
|||||||||||||||||||||||||||||||| |||||||||| |||||||| |||||||
Sbjct 241 CATCTCCGGCGACGCAACAGCAGCAACATCTCCCCCAGCCTTTGGTACGGCCACCTCCGC 300
Query 295 AGGCGTACTCTAGACCATGGCAACAACACTCCTCTTACACTCACTTCTCCTCCGCTTCGT 354
|||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 301 AGGCGTACTCGAGACCATGGCAACAACACTCCTCTTACACTCACTTCTCCTCCCCTTCGT 360
Query 355 CGCCATTGTTATCTTCCTCATCAGCGCCAGCCTCTTCGTCTTCGTCTTTACCTATTAGTG 414
||||||||||||||||||||||||| || || ||||||||||||||||||||||||| ||
Sbjct 361 CGCCATTGTTATCTTCCTCATCAGCTCCGGCATCTTCGTCTTCGTCTTTACCTATTACTG 420
Query 415 GGCAACAAAGAGGTGGTATGGCGATTGGCGTTCCGGCTTCCCCAATTCCGAGTCCTTCTC 474
|||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 421 GGCAACAAAGGGGTGGCATGGCGATTGGCGTTCCAGCTTCCCCAATTCCGAGTCCTTCTC 480
Query 475 CTACACCTTCTCAACATTCGCCTTCTGCTTTTCCCGGCTCTTTTGGGCAACAATACGGCG 534
|||| |||||||||||| ||||||||||||||||||||||||||||||| || |||||||
Sbjct 481 CTACTCCTTCTCAACATACGCCTTCTGCTTTTCCCGGCTCTTTTGGGCAGCAGTACGGCG 540
Query 535 GATTAGGTCGTGGAACTGTTGGAATGTCAGAAGCTACGTCCAATACAAGTTCCCCTCAGG 594
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 541 GATTAGGTCGTGGAACTGTTGGAATGTCAGAAGCTACGTCCAATTCAAGTGCCCCTCAGG 600
Query 595 TTAGAATGATGCAAGGAACTCAGGGAATTGGGATGATGGGAACACTTGGCTCAGGTTCCC 654
|||| |||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 601 TTAGGATGATGCAAGGATCTCAGGGAATTGGGATGATGGGGACACTTGGCTCAGGTTCCC 660
Query 655 AAATAAGGCCGAGTGGGATGACTCAGCACCAACAGAGACCAACTCAATCGTCTCTAAGGC 714
|||| || |||||||||||| ||||||| ||||||||||||||||||||||||||||| |
Sbjct 661 AAATGAGACCGAGTGGGATGGCTCAGCATCAACAGAGACCAACTCAATCGTCTCTAAGAC 720
Query 715 CAGCTTCCTCCACAAGTACCCAATCTCCTGTTGCTCAAAACTTTCAAGGACATAGCCTTA 774
||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 721 CAGCTTCCTCCCCAAGTACCCAATCTCCTGTTGCCCAAAACTTTCAAGGACATAGCCTTA 780
Query 775 TGAGACCTTCACCTATTAGCTCTCCTAATGTCCAATCTACTGGTGCATCACAACAAAGCT 834
||||||||||||||||| | ||||||| ||| ||||||||||||||||||||||||||||
Sbjct 781 TGAGACCTTCACCTATTGGTTCTCCTAGTGTGCAATCTACTGGTGCATCACAACAAAGCT 840
Query 835 TGCAAGCTATCAATCAACCTTGGTTATCATCTACTCCCCAAGGGAAGCCGCCTTTGCCAC 894
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 TGCAAGCTATTAATCAACCTTGGTTATCATCTACTCCCCAAGGGAAGCCGCCTTTGCCAC 900
Query 895 CTCCTTCGTATAGACCACAAGTAAATTCTCCCTCTATGCAACAAAGACCTCATATTCCTC 954
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 901 CTCCTTCGTATAGACCACAAGTAAATTCTCCCTCCATGCAACAAAGACCTCATATTCCTC 960
Query 955 AGCAACATATTTCTACGTCAGCAGcaactccacagcctcagcaacaacaatctcaacaac 1014
|||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 961 AGCAACATCTTTCTACGTCAGCAGCAACTTCACAGCCTCAGCAACTACAATCTCAACAAC 1020
Query 1015 aacatcagcctcaagagcaacttcaacaaTTGAGATCTCCGCAGCAGCCTTTAGCTCACC 1074
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1021 AACATCAGCCTCAAGAGCAACTTCAACAATTGAGATCTCCGCAGCAGCCTTTACCTCACC 1080
Query 1075 CACATCAACCAACCCGGGTCCAAGGTTTGGTAAATCAGAAAGTTACTTCTCCGGTAATGC 1134
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1081 CACATCAACCAACCCGGGTCCAAGGGTTGGTAAATCAGAAAGTTACTTCTCCGGTAATGC 1140
Query 1135 CGAGCCAGCCTCCTGTGGCTCAACCAGGAAACCATGCTAAAACAGTTTCTGCAGAGACCG 1194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1141 CGAGCCAGCCTCCTGTGGCTCAACCAGGAAACCATGCTAAAACAGTTTCTGCAGAGAATG 1200
Query 1195 AGCCGTCTGATGATCGTATCCTGGGGAAACGAAGCATCCATGAGCTACTTCAACAGATTG 1254
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 AGACATCTGATGATCGTATCCTGGGGAAACGAAGCATCCATGAGCTACTTCAACAGATTG 1260
Query 1255 ACCCGTCAGAGAAATTGGATCCAGAGGTTGAAGACATCCTTTCTGATATTGCTGAAGATT 1314
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1261 ACCCGTCAGAGAAATTGGATCCAGAGGTTGAAGACATCCTTGCTGATATTGCTGAAGATT 1320
Query 1315 TTGTGGAGTCAATCACAACTTTTGGCTGTTCTTTAGCCAAGCATAGAAAGTCAGATATTC 1374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1321 TTGTGGAGTCAATCACAACTTTTGGCTGTTCTTTAGCCAAGCATAGAAAGTCAGATACTC 1380
Query 1375 TAGAGGCTAAGGACATCTTGCTCCATGTTGAAAGAAACTGGAATATTAGGCCTCCTGGTT 1434
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1381 TAGAGGCTAAGGACATCTTGCTCCATGTTGAAAGAAACTGGAATATCAGGCCTCCTGGTT 1440
Query 1435 TTAGCAGTGATGAGTTCAAGACATTTCGGAAGCCATTGACAACAGATATTCACAAAGAGC 1494
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1441 TTAGCAGTGATGAGTTCAAGACATTTCGAAAGCCATTGACAACAGATATTCACAAAGAGC 1500
Query 1495 GACTTGCGGCTATAAAGAAGTCGGTCACGGCAACAGAAGCAGCAAACGCCAGGAATCAGT 1554
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1501 GACTTGCGGCAATAAAGAAGTCGGTCACGGCAACAGAAGCAGCAAACGCCAGGAATCAGT 1560
Query 1555 TTGGGCATGGGACTGCTAATGCAAGAGGCGGTCAGGCAAAGACACCTTCTAATCCCATGG 1614
||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||
Sbjct 1561 TTGGGCATGGGACTGCTAATGCAAGGGGCGGTCAGGCAAAGACGCCTTCTAATCCCTTGG 1620
Query 1615 GCTCTACAACTTTCAATCACTGATGTATTAGATCAACCCTCCAATCGTGTTTGGTAGGAA 1674
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1621 GCTCTACAACTTTCAATCACTGATGTATTAGATCAACCCTCCAATCGTGTTTTGTAGGAA 1680
Query 1675 TTTTCCATTAAAAAGGTACGAAAT-TTGTATCACCCATTTTGTACCCTATCTAGATCTCA 1733
|||||||||| ||||||||||| | ||||| |||||||||||||| | | || ||
Sbjct 1681 TTTTCCATTACAAAGGTACGAA-TGTTGTAACACCCATTTTGTAC---A----G-TC-CA 1730
Query 1734 CAGTCCAAGATAACTACAGGCATGGAGGCTAGGCTAGATCTTAATTTTAACCATTAGTAA 1793
|| | |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1731 -AG---A---TAACTACAAGCATGGAGGCTAGGCTAGATCTTAATTTTAACCATTAGTAA 1783
Query 1794 AGTATCTTACCACCTCATGGGATTGAATTGATTCAATGTTTTGCAAAACGGCCAAAAGTG 1853
||||||||||||||| ||||||||||||||||||||||||||||||| | | ||| |||
Sbjct 1784 AGTATCTTACCACCTTATGGGATTGAATTGATTCAATGTTTTGCAAAGCA-C-AAAGGTG 1841
Query 1854 TATGAATTGAGTGATGAGACACAGTTATAAAGCGGTTACAAAACCGGACTAGCCGGTATA 1913
||||||||||| ||||||||||||||||||||||||||| || |||||||||| |||||
Sbjct 1842 TATGAATTGAGAGATGAGACACAGTTATAAAGCGGTTACGAA-CCGGACTAGCTGGTATT 1900
Query 1914 ATCCATTAAACAGATTCTTCTCATACAGTTGAATCTTCC 1952
|||||||||||||||||||||||||||||||||||||||
Sbjct 1901 ATCCATTAAACAGATTCTTCTCATACAGTTGAATCTTCC 1939
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73361811870
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5