BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G10080.1
Length=903
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478336 jgi|Araly1|478336|fgenesh2_kg.3__1037__AT3G10080.1 1160 0.0
> Ahg478336 jgi|Araly1|478336|fgenesh2_kg.3__1037__AT3G10080.1
Length=851
Score = 1160 bits (628), Expect = 0.0
Identities = 690/720 (96%), Gaps = 3/720 (0%)
Strand=Plus/Plus
Query 7 ACCTCAAGTAAAATGGAAGCAAACACTTTGTTTCTTCTAAAAGCTCTTTGTCTTCTTTGT 66
||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||
Sbjct 2 ACCTCAAGTAAAATGGAAGCAAACACTCTGTTTCTTCTAAAGGCTCTTTGTCTTCTCTGT 61
Query 67 TTTAATGTATGCTTCACATTAGCTTCCGACCCTGATCCCATCCAAGACTTCTGCATACCA 126
|||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 62 TTTAGTGTATGCTTCACATTGGCTTCCGACCCTGATCCCATCCAAGACTTCTGTATACCA 121
Query 127 AAACCTGTGACATCTCCTTACCATGACCATCACTTCTCCACCAATCTCCCTTGCAAAAAC 186
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 122 AAACCTATGACATCTCCTTATCATGACCATCACTTCTCCACCAATCTCCCTTGCAAAAAC 181
Query 187 TCCTCCGAAGTAACCACCGAAGATTTTGTCTTTTCCGGTCTAAAAACTGCCGGAAACTTC 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 182 TCCTCCGAAGTAACCACCGAAGATTTTGTCTTTTCCGGTCTAAAAACTGCCGGAAACTTC 241
Query 247 ACGGAGACGGGGTTCGCCACCGTCCCAGTAGGCCCAGAAAACTTCCCCGGCCTTAATACA 306
|||||||| ||||||||||||||||||||| |||| | ||||||||| |||||||| |||
Sbjct 242 ACGGAGACTGGGTTCGCCACCGTCCCAGTAAGCCCGGCAAACTTCCCGGGCCTTAACACA 301
Query 307 TTAGGCATCTCGTTTGTCCGGGCTGATCTCAAACCCGGATCCATTAACCCACCACATTAC 366
|||||| | |||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 302 TTAGGCCTGTCGTTTGTCCGGGCTGATCTCAAACCAGGATCCATAAACCCACCACATTAC 361
Query 367 CATCCGCGGGCGACGGAAGTAGCCCACTTGGTTAAAGGACGGGTTTACTCTGGTTTTGTG 426
|| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 362 CACCCGCGGGCCACGGAAGTAGCCCACTTGGTTAAAGGACGGGTTTACTCCGGTTTTGTG 421
Query 427 GACTCGAACAATAAGGTTTACGCTAAAGTGATGGAAGAAGGAGAAATGATGGTTTACCCA 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 GACTCGAACAATAAGGTTTACGCTAAAGTGATGGAAGAAGGAGAAATGATGGTTTACCCA 481
Query 487 AAAGGGCTTGTACATTTTCAGATGAACGTCGGAGATGTTACGGCCACGATTGTCGGCGGA 546
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 482 AAAGGGCTAGTGCATTTTCAGATGAACGTCGGAGATGTTACGGCCACGATTGTCGGCGGA 541
Query 547 CTTAATAGCCAAAACCCTGGTATTCAGAAGATACCGTCCGTGGTTTTTGGGTCAGGGATC 606
|||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||
Sbjct 542 CTTAATAGCCAAAACCCTGGTATTCAGAAGATACCGTCGGTTGTTTTTGGATCAGGGATC 601
Query 607 AATGAGGAGTTGCTTATGAAAGCTTTTGGGTTGAGTCTTAAGCAGATTGGTACGTTGAAG 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 602 AATGAGGAGTTGCTTATGAAAGCTTTTGGGTTGAGTCTTAAGCAGATTGGTACGTTGAAG 661
Query 667 AAAAGATTTGATCCTGTCATGTCTAATGAACATTGATGTTTTCTCTTAAAGT-CTT-ATC 724
||||||||||||||||||||||| ||||||||||||||||||||||||| || ||| |||
Sbjct 662 AAAAGATTTGATCCTGTCATGTCGAATGAACATTGATGTTTTCTCTTAA-GTTCTTGATC 720
Score = 217 bits (117), Expect = 1e-55
Identities = 135/143 (94%), Gaps = 3/143 (2%)
Strand=Plus/Plus
Query 762 AGTTCTTGATCATAATGTTA-TTTATATATTTTGACCCAAACAATGGTCATCTTTAGCTA 820
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||
Sbjct 710 AGTTCTTGATCATAATGTTATTTTATATATTTTGACCCAAAAAATGGTCATCTTTAGTTA 769
Query 821 GACAATGTTTCTTTCT-ACATGAATTATTATCACTTATCCACACTTCACATTTAGAATCC 879
|||||||||||||||| || |||||||||||| |||||||||||||||||| || |||||
Sbjct 770 GACAATGTTTCTTTCTAAC-TGAATTATTATCGCTTATCCACACTTCACATATATAATCC 828
Query 880 TGAATTATTATCACTAAACCTAC 902
|||||||||||||||||||||||
Sbjct 829 TGAATTATTATCACTAAACCTAC 851
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33471921126
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5