BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G10090.1

Length=449
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg478337 jgi|Araly1|478337|fgenesh2_kg.3__1038__AT3G10090.1         460    3e-129
  Ahg925603 jgi|Araly1|925603|scaffold_201164.1                        324    4e-88 


> Ahg478337 jgi|Araly1|478337|fgenesh2_kg.3__1038__AT3G10090.1
Length=356

 Score =  460 bits (249),  Expect = 3e-129
 Identities = 286/304 (94%), Gaps = 2/304 (1%)
 Strand=Plus/Plus

Query  15   GCGTCTCTCGAATTAGGGTTCTAGGATCTCTGCTCTTAAAACTCTTATCGCCGCTAAAAC  74
            |||||||||||||||||||||||| |||||||||||| |||||||||||| |||||||||
Sbjct  1    GCGTCTCTCGAATTAGGGTTCTAGTATCTCTGCTCTTTAAACTCTTATCGACGCTAAAAC  60

Query  75   TCTCTACCCATCGCAGAGCCTCTCTAAAGAATGGATTCTCAGATCAAGCACGCTGTTGTA  134
            ||||||||||||||||||||| |||| |||||||||||||||||||| ||||| ||||||
Sbjct  61   TCTCTACCCATCGCAGAGCCTATCTACAGAATGGATTCTCAGATCAAACACGCCGTTGTA  120

Query  135  GTGAAAGTGATGGGAAGGACTGGATCAAGGGGTCAAGTGACTCAGGTTAGAGTGAAGTTC  194
            |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  121  GTGAAAGTGATGGGTAGGACTGGGTCAAGGGGTCAAGTGACTCAGGTTAGAGTGAAGTTC  180

Query  195  ACTGACTCGGACCGTTACATCATGAGGAACGTTAAAGGACCTGTCAGAGAGGGAGATATT  254
            |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct  181  ACTGACTCGGACCGTTACATCATGAGGAACGTCAAAGGACCTGTTAGAGAGGGAGATATT  240

Query  255  CTCACCTTGCTGGAGTCCGAGAGAGAAGCTAGAAGACTTCGTTGATTCT--CTTTGCAAA  312
            |||||| |||| ||||| |||||||||||||||||||| |||| |||||  |||||||||
Sbjct  241  CTCACCCTGCTCGAGTCTGAGAGAGAAGCTAGAAGACTGCGTTAATTCTTTCTTTGCAAA  300

Query  313  TTGT  316
            ||||
Sbjct  301  TTGT  304


> Ahg925603 jgi|Araly1|925603|scaffold_201164.1
Length=240

 Score =  324 bits (175),  Expect = 4e-88
 Identities = 194/203 (96%), Gaps = 1/203 (0%)
 Strand=Plus/Plus

Query  102  AGAATGGATTCTCAGATCAAGCACGCTGTTGTAGTGAAAGTGATGGGAAGGACTGGATCA  161
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  20   AGAATGGATTCTCAGATTAAGCACGCTGTTGTAGTGAAAGTGATGGGAAGGACTGGATCA  79

Query  162  AGGGGTCAAGTGACTCAGGTTAGAGTGAAGTTCACTGACTCGGACCGTTACATCATGAGG  221
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  80   AGGGGTCAAGTGACTCAGGTTAGAGTGAAGTTCACTGACTCGGACCGTTACATCATGAGG  139

Query  222  AACGTTAAAGGACCTGTCAGAGAGGGAGATATTCTCACCTTGCTGGAGTCCGAGAGAGAA  281
            || || ||||||||||| ||||||||||||||||||||| |||| ||||| |||||||||
Sbjct  140  AATGTCAAAGGACCTGTTAGAGAGGGAGATATTCTCACCCTGCTCGAGTCTGAGAGAGAA  199

Query  282  GCTAGAAGACTTCGTTGA-TTCT  303
            ||||||||||| |||||| ||||
Sbjct  200  GCTAGAAGACTCCGTTGAATTCT  222



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16216125325


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5