BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G10110.1
Length=930
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472048 jgi|Araly1|472048|fgenesh2_kg.1__2002__AT3G10110.1 1066 0.0
> Ahg472048 jgi|Araly1|472048|fgenesh2_kg.1__2002__AT3G10110.1
Length=770
Score = 1066 bits (577), Expect = 0.0
Identities = 716/779 (92%), Gaps = 26/779 (3%)
Strand=Plus/Plus
Query 60 TTTTAAGCTTTTGATGACA-TTGTCCCTTGTCGGATCCTACTCTC-----T-TA-ACCTT 111
||||||||||||||||||| || ||||||||||||| |||||||| | || |||||
Sbjct 1 TTTTAAGCTTTTGATGACACTT-TCCCTTGTCGGATTCTACTCTCTATAGTCTATACCTT 59
Query 112 TGAAATGGCTGATTCGAGTGCTGCTGAACCAACAACCGGTGCTTCTTCTCCCCCCGTGGC 171
||||||||| ||||||| | ||| | ||||||||||||||||| | ||||||
Sbjct 60 TGAAATGGCAGATTCGA---ATACTG-A--GACAACCGGTGCTTCTTCGGGCTCCGTGGG 113
Query 172 TTCTGATGAGAACTCTACCCAGATTCAACCGATCCGGATGCCAACCATCGAGGAGATCCG 231
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 114 TGCTGATGAGAACGCTACCCAGATTCAACCGATCCGGATGCCAACCATCGAGGAGATCCG 173
Query 232 AGCTCAAGAGGTTTGGAACAACTGCGCCGTTCGCGCTGTTACTAGTGGAGTCATGGGAGG 291
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 174 AGCTCAAGAGGTTTGGAACAACTGCGCCGTTCGCGCTGTAACTAGTGGAGTCATGGGAGG 233
Query 292 AGGACTCGGGTTGATGATGGGTTTGTTCTTGGGGGCATTAGATAATCCTATTACGCATGA 351
||| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 234 AGGCCTCGGGTTGATGATGGGTTTGTTCTTGGGGGCACTAGATAATCCTATTATGCATGA 293
Query 352 TACTATGACGGCTAGGCAGCAGTTTGTGTTCACGGCAAAACAAATGGGGCAAAGGAGTTG 411
||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 294 TACGATGACGGCTAGGCAGCAGTTTGTGTTCACAGCAAAACAAATGGGCCAAAGGAGTTG 353
Query 412 GAATTCCTGTAAGACATTTGCAGTTATGGGTTTGGTTTTCTCTGCTGCAGAATGCATTGT 471
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 354 GAATTCCTGTAAGACATTTGCCGTTATGGGTTTGGTTTTCTCTGCAGCAGAATGCATTGT 413
Query 472 CGAAAAGGCAAGAGCTAAGCATGACACTGT-AAACACCGCTATAGCTGGATGTGTTACCG 530
||| ||||||||||||||||||||||| | |||||||||||||||||||||||| ||||
Sbjct 414 CGAGAAGGCAAGAGCTAAGCATGACAC-GACAAACACCGCTATAGCTGGATGTGTGACCG 472
Query 531 GTGGTTCAATGTCCGCCCGAGGTGGGCCAAAAGCTGCGTGTATAGGTTGCGCTGGATTTG 590
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 473 GTGGTTCAATGTCCGCGCGAGGTGGGCCAAAAGCTGCGTGTATAGGTTGCGCTGGCTTTG 532
Query 591 CAACTTTCTCTGTACTCATAGAGAAGTTCTTTGATAGGCATACATAAACCAGTGAGATAT 650
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 533 CAACTTTCTCTGTACTCATAGAGAAGTTCTTTGATAGGCATACATAAATCACTGAGATAT 592
Query 651 CTAACAGACGCCATTGCTGAGAtttttttGCTGCTTCTTTTCTGTGATAGTGATACAGTT 710
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 593 TTAACAGACGCCAATGCTGAGATTTTTTTGCTGCTTCTTTTCTGTGATAGTGATACAATT 652
Query 711 CATCACCTGAACCCAGGGAGATAGAAGCTAGAATTACACTTTTCAATATAGAATAAGCAA 770
|||||||||| | |||| |||||||| |||||||||||||||| ||||||||||||||||
Sbjct 653 CATCACCTGAGCACAGGCAGATAGAAACTAGAATTACACTTTTAAATATAGAATAAGCAA 712
Query 771 GGCTTGTGTTGATTGCAT--A-TACT-T-CA---ATTGTTGTTATTTATCATAGATTTC 821
||||||||||||||| || | || | | || |||||||||||||||||||||||||
Sbjct 713 GGCTTGTGTTGATTG-ATTGAATATTCTACAGTTATTGTTGTTATTTATCATAGATTTC 770
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34501239885
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5