BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G10120.1
Length=820
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478339 jgi|Araly1|478339|fgenesh2_kg.3__1040__AT3G10120.1 874 0.0
Ahg487167 jgi|Araly1|487167|fgenesh2_kg.6__301__AT5G03890.1 183 1e-45
> Ahg478339 jgi|Araly1|478339|fgenesh2_kg.3__1040__AT3G10120.1
Length=616
Score = 874 bits (473), Expect = 0.0
Identities = 566/608 (93%), Gaps = 18/608 (3%)
Strand=Plus/Plus
Query 7 caaaaaaatctctaaacacatatac---agaagaaagcacaaactaaagttagaaaaaaa 63
||||||||||||||||||||| ||| ||||| || ||||||||||| || || |||
Sbjct 1 CAAAAAAATCTCTAAACACATCTACAAAAGAAGGAATCACAAACTAAA-TT---AAGAAA 56
Query 64 caaacaaaca-aacaaaaaGTATGGGGAACTGTTTAGTAATGGAGAAGAAAGTGATAAAG 122
||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 57 -AAACAAACATAAGAAAAAGTATGGGGAACTGTTTAGTAATGGAGAAGAAAGTGATAAAG 115
Query 123 ATAATGAGAAATGATGGGAAAGTAGTTGAATACAGAGGACC-TATGAAGGTTCATCACAT 181
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 116 ATAATGAGAAATGATGGGAAAGTAGTTGAATACAGAGGACCCT-TGAAGGTTCATCACAT 174
Query 182 CCTCACCCAATtctctcctcactactctctctttgactctctcACCAACAATTGTCATCT 241
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 175 CCTCACCCAATTCTCTCCTCACTACTCTCTCTTTGACTCTCTCTCCAACAATTGTCATCT 234
Query 242 TCATCCCCAAGCCAAGCTTCTCTGTGGCCGTCTCTACTATCTATTGCCCCAGGAGACTAA 301
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
Sbjct 235 TCATCCCCAAGCCAAGCTTCTCTGTGGGCGTCTCTACTATCTCTTGCCCCAGGAGACGA- 293
Query 302 CTCAA-TCAAGCACATGAAGAAGACGATGAAGAAAGTCAGGTTTGCAAATCCAGAGGTGG 360
|| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 294 CTAAAATCAAGCACGTGAAGAAGACGATGAAGAAAGTCAGGTTTGCAAATCCAGAGGTGG 353
Query 361 AAAAAGAAGAACAAGAAGAAGATAGATTAACAGATTGTTGTGACAACACCAAGGAGAAGA 420
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 354 AAAAAGAAGAA---GAAGAAGATAGATTAACAGATTGTTGTGACAACACCAAGGAGAAGT 410
Query 421 CTAATGGTGTTGTGAGAGTGAAGATGGTTGTGAGTAAGCAAGAGCTGGAGAAGCTGCTTC 480
|||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||
Sbjct 411 CTAATGGTGTTGTGAGGGTGAAGATGGTTGTGAGTAAGCAAGAGCTTGAAAAGCTGCTTC 470
Query 481 AAGGAGGTTCTGTTCATGAAATGGTTTATAGGACTCTTGCTAAGCAACATCTGTGTGATG 540
||||||||||||| ||||| |||||||||||||||||||||||||||||| | |||| ||
Sbjct 471 AAGGAGGTTCTGTCCATGAGATGGTTTATAGGACTCTTGCTAAGCAACATATATGTGCTG 530
Query 541 ATGATGATGAGTG-TCATAAAGAAGGCTGGAGACCTTTGTTAGATAGCATTCCTGAAACT 599
|||||||||| || |||| | ||| ||||||||||||||||||||||||||||||||||
Sbjct 531 ATGATGATGA-TGATCATCATCAAGTCTGGAGACCTTTGTTAGATAGCATTCCTGAAACT 589
Query 600 GATTAGCC 607
||||||||
Sbjct 590 GATTAGCC 597
> Ahg487167 jgi|Araly1|487167|fgenesh2_kg.6__301__AT5G03890.1
Length=538
Score = 183 bits (99), Expect = 1e-45
Identities = 414/554 (75%), Gaps = 69/554 (12%)
Strand=Plus/Plus
Query 84 ATGGGGAACTGTTTAGTAATGGAGAAGAAAGTGATAAAGATAATGAGAAATGATGGGAAA 143
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1 ATGGGGAACTGTTTAGTAATGGAGAAGAAAGTGATAAAGATAGTGAGAAATGATGGGAAG 60
Query 144 GTAGTTGAATACAGAGGACCTATGAAG-GTTCATCACATCCTCACCCAATtctctcctca 202
||| ||||||| |||| ||| || | | |||||||||||||| || ||||||||| |||
Sbjct 61 GTACTTGAATATAGAGAACCAATTA-GTGTTCATCACATCCTTACTCAATTCTCTGGTCA 119
Query 203 ctactctctctttgactctctcACCAACAATTGTCATCTTCATCCCCAA-GCCAAGCTTC 261
|| |||||||| || || |||| | ||||||| | || | || |||||||
Sbjct 120 CT-CTCTCTCTC--ACA-----AC-AACACT---CATCTTC-TGCCTGATGCTAAGCTTC 166
Query 262 TCTGTGGCCGTCTCTACTATCTATTGCCCCAGGAGACTAACTCAATCAAGCACATGAAGA 321
||| ||| |||||||| ||||| |||| | | || || | || |||| | | ||||
Sbjct 167 TCTCTGGTCGTCTCTATTATCTCCTGCCT-AC-A-AC-AA-TGAA-CAAG-A-A-GAAG- 216
Query 322 AGACGATGAAGAAAGTCAGGTTTGCAAATCCAGAGGTGGAA-A-AA-GAA-GAACAAGAA 377
| | | |||||||| | |||||||||||| ||||||||| | || ||| || || ||
Sbjct 217 -GTCAAC-AAGAAAGTGACGTTTGCAAATCCGGAGGTGGAAGACAACGAAAGATCACTAA 274
Query 378 GAAGATAGATTAACAGATTGTTGTGA---CAACA-C--CA---A-GGAGAAGACTA-ATG 426
|| || ||| || ||| | |||| ||||| | || | || || ||| | | |
Sbjct 275 GA-GA-AGAAGAA--GATACTAGTGAAAGCAACAGCAACATCGATGGTGATGACAACAAG 330
Query 427 ---GT----GTTGTGAGAGTGAAGATGGTTGTG-AGTAAGCAAGAGCTGGAGAAGCTGCT 478
|| ||||||||| ||||||| |||||| | |||||||||| |||||||||| ||
Sbjct 331 AACGTAACTGTTGTGAGAATGAAGATCGTTGTGCA-TAAGCAAGAGTTGGAGAAGCTACT 389
Query 479 TCAAGGAGGTTCTGTTCATGAAATGGTTTAT-AGGACTCTTGCTAAGCAACATCTG-TG- 535
||||||||| || || ||||| ||| | || || ||||| | || |||| | || |
Sbjct 390 TCAAGGAGGGTCGGTCCATGAGATGATGTACCAG-ACTCTCGAGAAACAACTTTTGCTTA 448
Query 536 -TGATGATGATGATGAGTGTC-ATAAA-G-AA--G-G-CTGGAGACCTTTGTTAGATAGC 587
|||||||| |||||| | | || || | || | | |||||||||| ||||||||||
Sbjct 449 CTGATGATGGTGATGA-TCTTGATGAATGTAATAGCGGCTGGAGACCTGCGTTAGATAGC 507
Query 588 ATTCCTGAAACTGA 601
|| || ||| ||||
Sbjct 508 ATACCCGAATCTGA 521
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30307719015
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5