BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G10130.1
Length=1088
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928702 jgi|Araly1|928702|scaffold_301159.1 1160 0.0
> Ahg928702 jgi|Araly1|928702|scaffold_301159.1
Length=995
Score = 1160 bits (628), Expect = 0.0
Identities = 881/997 (88%), Gaps = 41/997 (4%)
Strand=Plus/Plus
Query 21 GATTGCGAAGAGAAATGATGATGATCAGCTCCTCCTCCA-T---T-A-CATCATCCC-TT 73
|||||||||||||||||||||||| | ||||||||||| | | | ||||||||| ||
Sbjct 7 GATTGCGAAGAGAAATGATGATGAGCTTCTCCTCCTCCATTGCATCATCATCATCCCTTT 66
Query 74 -TC-TCTTCTGTCTTCATCTC-CTGAGAAATTG-CC--C---CTC-A------T--AAAC 115
|| |||||| |||||||||| | |||||||| || | ||| | | ||||
Sbjct 67 CTCTTCTTCTCTCTTCATCTCAC-AAGAAATTGCCCATCGATCTCAATTCGTTTCCAAAC 125
Query 116 CCTATCCAGAGATGCCCAATTA-C-TTACTCCGGCTTCAG-AACGGCGAGC-GTGAACAG 171
|||| |||||||||| || ||| | | | |||| || | || || |||||||
Sbjct 126 CCTAACCAGAGATGCTCAGTTAGCGTCAGAACGGCGAGAGTGATTGC-TGCTATGAACAG 184
Query 172 AGCTATCCGGCGGCAGCCGCAGAGTCCAGCCGTGTCCGCCACTGAATCTAGGGTTTCTCT 231
||||||||||||||||| |||||||| ||||||||||||||||||||| |||||||||||
Sbjct 185 AGCTATCCGGCGGCAGCGGCAGAGTCAAGCCGTGTCCGCCACTGAATCCAGGGTTTCTCT 244
Query 232 CGTCCTTGCTCTCGCCTCTCAAGCTTCCTCTGTCTCTCAACGCCTTTTGGCTGATTTGGC 291
| || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 245 CATCTTTGCTCTCGCCTCTCAGGCTTCCTCTGTCTCTCAACGCCTTTTGGCTGATTTGGC 304
Query 292 GATGGAGACTGCGAAATATGTGTTTCCC-AAGAGATTTGATAGCTCTACTAATCTTGAAG 350
| |||||||||||||||| || |||||| |||||||| |||| || ||||||||||||
Sbjct 305 GGTGGAGACTGCGAAATACGT-TTTCCCGAAGAGATTCAATAG--CT-CTAATCTTGAAG 360
Query 351 AAGCTTTCATGTCTGTTCCGGATCTCGAGACAAT-GAACTTTAGAGTTCTATTTAGAACA 409
|||| |||||||| ||||| |||||||||||||| ||| || |||||| || ||| ||
Sbjct 361 AAGCGTTCATGTCCGTTCCTGATCTCGAGACAATGGAA-TTCAGAGTTGTAAGTAGGACT 419
Query 410 GACAAGTACGAGATTAGACAAGTTGAGCCTTATTTTGTGGCCGAGACTATAATGCCAGGG 469
|| ||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||
Sbjct 420 GATAAGTACGAGATTAGACAAGTTGAGCCTTACTTTGTCGCCGAGACTACAATGCCAGGG 479
Query 470 GAAACTGGATTTGAC-TCTTATGGTGCTTCCAAGTCTTTTAATGTTTTAGCTGAGTACCT 528
||||||||||||||| || ||||||||||| |||||||||||||| ||||||||||| ||
Sbjct 480 GAAACTGGATTTGACTTC-TATGGTGCTTCTAAGTCTTTTAATGTGTTAGCTGAGTATCT 538
Query 529 CTTTGGTAAGAACACAATAAAGGAGAAAATGGAGATGACGACCCCTGTTGTTACTCGGAA 588
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 539 ATTTGGTAAGAACACAATAAAGGAGAAAATGGAGATGACGACCCCTGTTGTTACTCGTAA 598
Query 589 AGTCCAATCTGTTGGAGAGAAGATGGAAATGACAACTCCAGTGATAACTAGCAAGGCAAA 648
|| ||||||||||||||| |||||||||||||| |||||||| || |||| |||||||||
Sbjct 599 AGCCCAATCTGTTGGAGATAAGATGGAAATGACTACTCCAGTAATTACTACCAAGGCAAA 658
Query 649 AGATCAAAACCAGTGGCGGATGTCTTTTGTCATGCCCTCAAAGTATGGTTCGAATTTGCC 708
|||||||| ||||||||| ||||||||||||||||||||||||||||| || ||||| ||
Sbjct 659 AGATCAAACCCAGTGGCGAATGTCTTTTGTCATGCCCTCAAAGTATGGCTCCAATTTTCC 718
Query 709 ATTACCAAAAGATCCTTCAGTCAAAATTCAGCAAGTGCCACGAAAGATTGTTGCTGTTGT 768
||| ||||||||| ||||||||||||||| | | ||||| ||||||||||||||||||||
Sbjct 719 ATTGCCAAAAGATTCTTCAGTCAAAATTCTGGAGGTGCCGCGAAAGATTGTTGCTGTTGT 778
Query 769 CGCCTTCTCAGGCTATGTTACCGATGAAGAGATTGAGAGACGGGAGAGAGAACTAAGGAG 828
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 779 CGCCTTCTCAGGCTATGTTACCGATGAAGAGATTGAGAGACGGGAGAAAGAACTAAGGAG 838
Query 829 AGCTCTTCAAAATGACAAGAAGTTCCGAGTGAGAGATGGAGTATCATTTGAAGTTGCACA 888
||||||||| |||||||||||||| ||||||||||||||||| ||| |||||||||||||
Sbjct 839 AGCTCTTCATAATGACAAGAAGTTTCGAGTGAGAGATGGAGTTTCAGTTGAAGTTGCACA 898
Query 889 GTATAATCCACCATTCACTCTCCCGTTTATGCGCCGCAACGAGGTCTCTCTCGAAGTTGA 948
||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||
Sbjct 899 GTATAATCCACCATTCACTCTTCCGTTTATGCGCCGCAACGAGGTTTCTCTGGAAGTTGA 958
Query 949 AAACAAAGAAGATTAGCCCCATCACAAGT-CATACAT 984
|| |||||||||||||||||||||||||| || ||||
Sbjct 959 AAGCAAAGAAGATTAGCCCCATCACAAGTACACACAT 995
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40524660771
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5