BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G10150.1
Length=1244
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478341 jgi|Araly1|478341|fgenesh2_kg.3__1042__AT3G10150.1 1838 0.0
> Ahg478341 jgi|Araly1|478341|fgenesh2_kg.3__1042__AT3G10150.1
Length=1213
Score = 1838 bits (995), Expect = 0.0
Identities = 1154/1229 (94%), Gaps = 18/1229 (1%)
Strand=Plus/Plus
Query 1 ATGAAAAAACCGTCGTTGTTTCAGATCATTATTATAGTGCTAAGCATACCAACGACTACG 60
|||||||||||||||||||||| ||||| | || |||||||||||||| | || ||
Sbjct 1 ATGAAAAAACCGTCGTTGTTTCTGATCA-T-TT-TAGTGCTAAGCATA-C--CG---AC- 50
Query 61 GGGAGGACGGTGGGAAATCTTCGGGTGCGGGAAGGATCACCTTTCAAGATCGCAATATTT 120
||||||||| |||||||||||||||||||||||||| ||||||||||| || |||
Sbjct 51 -----GACGGTGGGCAATCTTCGGGTGCGGGAAGGATCACCGTTCAAGATCGCCATCTTT 105
Query 121 GCAGACCTCCACTTCGGTGAAGACACGTGGACTGATTGGGGTCCTGGTCAGGATGTGAAC 180
||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 106 GCAGACCTCCACTTCGGTGAAGACACGTGGACTGATTGGGGTCCTCGTCAAGATGTGAAC 165
Query 181 TCCGTTAACGTTATGTCCGCCGTTCTCGACGCTGAAACTCCAGATTTTGTGGTCTATTTG 240
||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 166 TCCGTTAACGTTATGTCCGCCGTTCTCCACGCTGAAACTCCAGATTTTGTGGTCTACTTG 225
Query 241 GGAGATGTTGTGACGGCTAACAACATAGCAATCCAAAACGCAAGCTTGTTTTGGGACAAA 300
|||||||| || || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 226 GGAGATGTAGTAACAGCTAACAACATAGCAATCCAAAACGCAAGCTTGTTTTGGGACAAA 285
Query 301 GCAATCTCTCCTACAAGAGACAGAGGCATTCCATGGGCTACTCTCTTTGGTAACCATGAC 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 286 GCAATCTCTCCTACAAGAGACAGAGGCATTCCATGGGCTACTCTCTTTGGTAACCACGAC 345
Query 361 GATGCTTCTTTTGTTTGGCCTTTGGATTGGTTGTCTTCCTCCGGTATTCCTCCCCTTCGT 420
|||||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 346 GATGCTTCTTTTCTTTGGCCTTTGGATTGGTTCTCTTCCTCCGGTATTCCTCCCGTTCGC 405
Query 421 TGCCCTGCAGCATCAGATGATGATGGATGCACGTTCAGAGGAACTACGCGAGTGGAACTG 480
|||||||| ||||| |||||| |||||||| |||| ||||||||||||||||||||| ||
Sbjct 406 TGCCCTGCTGCATCGGATGATAATGGATGCGCGTTTAGAGGAACTACGCGAGTGGAATTG 465
Query 481 ATTCAGGAAGAAATAAAGTCATCCAATGCACTCTCATACTCCATGATTAGTCCTAAGGAG 540
||||| ||||| ||||||||||||| ||||||||||||||| |||||| |||| ||||||
Sbjct 466 ATTCAAGAAGAGATAAAGTCATCCAGTGCACTCTCATACTCTATGATTGGTCCGAAGGAG 525
Query 541 CTATGGCCAAGCGTATCTAACTATGTCCTTCTTGTGGAATCATCGGATCATTCGAAACCA 600
|||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||
Sbjct 526 CTATGGCCAAGCGTATCTAACTATTTCCTTCTTGTGGAATCATCGGATCATTCAAAATCA 585
Query 601 CCCGTGGCATTGCTATATTTTCTTGATTCGGGCGGTGGTTCATACCCGGAGGTTATCTCA 660
|| |||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 586 CCTGTGGCAATACTATACTTTCTTGATTCGGGCGGTGGTTCATACCCGGAGGTTATCTCA 645
Query 661 AATGCTCAAGTGGAATGGTTTAAAACCAAGTCTAATACTCTTAATCCCT-ATTTAAGGAT 719
|||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||
Sbjct 646 AATGCTCAAGTGGAATGGTTTAAAACCATGTCTAATACTCTTAAT-CCTGATTTAAGGAT 704
Query 720 CCCGGAGTTGATATTTTGGCACATACCTAGTAAAGCATACAAGAAAGTAGCTCCAAGGTT 779
||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 705 CCCAGAGTTGATATTTTGGCACATACCTAGTAAAGCATACAAGAAAGTAGCCCCAAGGCT 764
Query 780 ATGGATAACAAAACCTTGCGTTGGATCAATCAACAAAGAGAAAGTTGTTGCTCAAGAAGC 839
||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 765 ATGGATAACAAAACCTTGCGTCGGATCAATCAACAAAGAGAAAGTTGCTGCTCAAGAAGC 824
Query 840 TGAAAATGGGATGATGAGAGTTCTTGAGAACAGATCCTCCGTTAAGGCAGTGTTTGTAGG 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 825 TGAAAATGGGATGATGAGAGTTCTTGAGAACAGATCCTCCGTTAAGGCAGTGTTTGTAGG 884
Query 900 ACACAACCATGGACTAGACTGGTGCTGTCCGTACAAAGATAAACTCTGGCTTTGCTTTGC 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 885 ACACAACCATGGACTAGACTGGTGCTGTCCGTACAAAGATAAACTCTGGCTTTGCTTTGC 944
Query 960 GAGACACACAGGTTATGGTGGATATGGAAATTGGCCAAGGGGATCAAGGATTTTGGAGAT 1019
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 945 GAGACACACAGGTTATGGTGGATATGGAAATTGGCCAAGAGGATCAAGGATTTTGGAGAT 1004
Query 1020 TTCTGAAATGCCCTTTCGTATTAAGACCTGGATTAGGATGGAAGATGGATCTGTCCACAG 1079
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1005 TTCTGAAATGCCCTTTCTTATTAAGACCTGGATTAGGATGGAAGATGGATCTGTCCACAG 1064
Query 1080 TGAAGTTAACCTAACATATGATTAGTCTATTTATCACATATGTCAAACTTTGTAGAAGTA 1139
||||||||| ||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1065 TGAAGTTAATCTAACATATGATTAGTCTATTCATTACATATGTCAAACTTTGTAGAAGTG 1124
Query 1140 ATAGTGCCTA-TAGTTGTTGGTAGGTTTGGTCACTGTAAACTTGTTAAGTGACAAGAAAA 1198
||| |||||| || ||||||||||||||||||| |||| |||||||||||||| ||||||
Sbjct 1125 ATATTGCCTAGTAATTGTTGGTAGGTTTGGTCATTGTAGACTTGTTAAGTGACTAGAAAA 1184
Query 1199 ACTGCTTTCCATAAGCCAATAAATGAACT 1227
|||| ||| ||||||||||| |||||||
Sbjct 1185 ACTGATTTTAATAAGCCAATATATGAACT 1213
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46471835823
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5