BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G10180.1
Length=3822
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478343 jgi|Araly1|478343|fgenesh2_kg.3__1044__AT3G10180.1 2693 0.0
Ahg902462 jgi|Araly1|902462|Al_scaffold_0004_3112 1129 0.0
> Ahg478343 jgi|Araly1|478343|fgenesh2_kg.3__1044__AT3G10180.1
Length=4134
Score = 2693 bits (1458), Expect = 0.0
Identities = 1596/1664 (96%), Gaps = 4/1664 (0%)
Strand=Plus/Plus
Query 1 ATGGAGAGAATCCATGTCTCAGTCAGAGCGCGACCGCTTTCGTCGGAGGACGCGAAGACA 60
|||||||||||||||||||||||||||||||| |||||||| |||||||||| |||||||
Sbjct 1 ATGGAGAGAATCCATGTCTCAGTCAGAGCGCGGCCGCTTTCATCGGAGGACGAGAAGACA 60
Query 61 AGTCCCTGGAAGATCTCTTCCGACTCAATTTTCATGCCCAATCACTCTTCTCTCGCTTTT 120
||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 61 AGTCCGTGGAAGATCTCTTCCGACTCAATTTTCATGCCCAATCACTCTTCTCTCTCTTTT 120
Query 121 GAATTTGATCGAATTTTTAGAGAAGATTGTAAAACTGTCCAAGTGTATGAGGCGCGGACG 180
||||||||||| |||||||||||||||||||||||| | |||||||||||||| |||||
Sbjct 121 GAATTTGATCGGATTTTTAGAGAAGATTGTAAAACTATTCAAGTGTATGAGGCACGGACC 180
Query 181 AAGGAGATTGTTTCTGCCGCTGTTCGTGGATTCAACGGAACCGTATTTGCTTACGGGCAA 240
|||||||||||| ||||||| |||||||||||||||||||| || |||||||||||||||
Sbjct 181 AAGGAGATTGTTGCTGCCGCAGTTCGTGGATTCAACGGAACGGTCTTTGCTTACGGGCAA 240
Query 241 ACTAACAGTGGCAAGACGCATACAATGCGAGGCTCACCTATTGAACCTGGAGTTATTCCT 300
||||| ||||||||||| ||| ||||||||||||||||||||||||||||||| || |||
Sbjct 241 ACTAATAGTGGCAAGACACATGCAATGCGAGGCTCACCTATTGAACCTGGAGTCATCCCT 300
Query 301 CTCGCTGTACATGATTTGTTTGACACTATATATCAGGATGCAAGTAGAGAGTTTCTGTTG 360
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CTCGCTGTACACGATTTGTTTGACACTATATATCAGGATGCAAGTAGAGAGTTTCTGTTG 360
Query 361 CGTATGTCGTACCTGGAGATTTATAATGAAGATATTAACGATTTGCTGGCCCCTGAGCAC 420
||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||| |||
Sbjct 361 CGTATGTCGTACCTGGAGATTTATAATGAAGATATCAACGATTTGTTGGCTCCTGAACAC 420
Query 421 AGAAAACTACAGATTCATGAAAATCTAGAGAAAGGAATATTTGTTGCTGGATTACGAGAA 480
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AGAAAACTACTGATTCATGAAAATCTAGAGAAAGGAATATTTGTTGCTGGATTACGAGAA 480
Query 481 GAGATTGTCGCTTCCCCTCAACAAGTCCTTGAAATGATGGAATTTGGAGAATCTCATCGG 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GAGATTGTCGCTTCCCCTCAACAAGTCCTTGAAATGATGGAATTTGGAGAATCTCATCGA 540
Query 541 CATATTGGGGAGACAAATATGAATCTTTACAGTAGCAGATCTCACACTATTTTTCGCATG 600
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 541 CATATTGGGGAGACAAATATGAATCTTTACAGTAGCAGATCTCACACTATTTTCCGTATG 600
Query 601 ATTATAGAAAGTAGACAGAAGATGCAAGATGAAGGTGTTGGAAATTCCTGTGATGCAGTT 660
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 601 ATTATAGAAAGTAGACAGAAGATGCAAGATGAAGGTGTTGGAAATGCCTGTGATGCAGTC 660
Query 661 CGTGTTTCTGTTCTGAATTTGGTGGATCTAGCTGGTTCAGAACGGGCTGCAAAAACCGGT 720
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 CGTGTTTCAGTTTTGAATTTGGTGGATCTAGCTGGTTCAGAACGGGCTGCAAAAACCGGT 720
Query 721 GCAGAGGGTGTTAGGTTGAAGGAGGGCTCACATATAAACAAAAGCTTGATGACACTCGGG 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GCAGAGGGTGTTAGGTTGAAGGAGGGCTCACATATAAACAAAAGCTTGATGACACTCGGG 780
Query 781 ACTGTCATaaaaaaaCTGAGTGAAGGAGTAGAAACTCAAGGTGGTCATGTCCCGTACCGA 840
|||||||| || |||||||||||||||||||||| ||||||||||||| |||| ||||||
Sbjct 781 ACTGTCATTAAGAAACTGAGTGAAGGAGTAGAAAATCAAGGTGGTCATATCCCATACCGA 840
Query 841 GACAGCAAGCTTACAAGGATCTTGCAGCCTGCCTTAGGTGGGAATGCCAACACAGCTATT 900
|||||||||||||||||||| |||||||| || |||||||| ||||| || |||||||||
Sbjct 841 GACAGCAAGCTTACAAGGATTTTGCAGCCAGCTTTAGGTGGAAATGCAAATACAGCTATT 900
Query 901 ATATGCAATATCACACTTGCACCGATTCATGCAGATGAAACCAAGAGCAGTCTTCAGTTC 960
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 ATATGCAATATAACACTTGCACCGATTCATGCAGATGAAACCAAGAGCAGTCTTCAGTTC 960
Query 961 GCTAGCCGAGCACTGCGTGTCACTAACTGTGCCCATGTCAATGAGATTTTGACTGATGCT 1020
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 961 GCTAGCCGAGCACTGCGTGTCACTAACTGTGCCCATGTCAATGAGATATTGACTGATGCT 1020
Query 1021 GCTCTATTAAAGCGCCAGAAGAAGGAGATAGAGGAGCTCAGATCCAAACTAAAGACTTCT 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 GCTCTATTAAAGCGCCAGAAGAAGGAGATAGAGGAGCTCAGATCCAAACTAAAGACTTCT 1080
Query 1081 CACTCTGACCATTCAGAAGAAGAGATTCTTAACTTGCGTAACACCTTGTTGAAGTCTGAA 1140
|||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1081 CACTCTGACCATTCAGAAGAAGAGATTCTTAACTTGCGCAATACCTTGTTGAAGTCTGAG 1140
Query 1141 TTAGAGAGAGAGCGAATAGCACTTGAGTTAGAAGAGGAGAAGAAGGCACAAGCTCAGAGG 1200
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 TTAGAGAGAGAGCGGATAGCACTTGAGTTAGAAGAGGAGAAGAAGGCACAAGCTCAGAGG 1200
Query 1201 GAAAGAGTTTTGCAGGAGCAAGCCaaaaaaaTCAAGAACTTGAGTTCAATGGTTCTTCTT 1260
|||| |||| ||||||||||||| |||||||| ||||||||||||||||||||||| |||
Sbjct 1201 GAAAAAGTTCTGCAGGAGCAAGCAAAAAAAATTAAGAACTTGAGTTCAATGGTTCTCCTT 1260
Query 1261 TCGAATAGAGATGAGAAGCGTGAGCAGGATCACTTTAAGAAGGGAAAAAGGAGGGATACA 1320
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1261 TCGAATAGAGATGAGAAGCGTGAACAGGATCAATTTAAGAAGGGAAAAAGGAGGGATACA 1320
Query 1321 TGGTGTATTGGTAAGCTTTCACGAGACTCCACATCAGAGGATCAGTCTAATGTTTTGTCA 1380
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1321 TGGTGTATTGGTAAGCTTTCACGAGACTCCACATCAGAGGTTCAGTCTAATGTTTTGTCA 1380
Query 1381 AGGGGATCCTCTCTTGAATCTGCAAGATCCGAGCGTGAGACTGGTCCACTACTTCCATTT 1440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1381 AGGGGATCCTCTCTTGAATCTGCAAGATCCGAGCGTGAGACTGGTCCACTACTTCCATTT 1440
Query 1441 TCAGAACTAGTAAATGAACCTTTATATAACATTAACGAGGAAGATGAAGATAGTATCGAG 1500
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1441 TCGGAACTAGTAAATGAACCTTTATATAACATTAACGAGGAAGATGAAGATAGTATCGAT 1500
Query 1501 GGAACCCTTGAAGATTCTGTACTTCCAGATCCATGTGCATTAGTGAATGTGACAAGCAGA 1560
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1501 GGAACCCTTGAAGATTCTGCACTTCCAGATCCATGTGCATTAGTGAATGTGACAAGCAGA 1560
Query 1561 AAGAAACC-ATCAATTA-AGCAGAAAAATCCTGTAGTGGTTGAAAACGAATTAGATAGAA 1618
|||||| | || ||||| | ||||||| ||||||||||||||||||||| ||||||||||
Sbjct 1561 AAGAAAACGAT-AATTAGA-CAGAAAACTCCTGTAGTGGTTGAAAACGAGTTAGATAGAA 1618
Query 1619 TTCAAAGGGAATATGAGGCTCTTCTCTTGCAATATGAAACCGAG 1662
|||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1619 TTCAAAGGGAATATGAGGATCTTCTCTTGCAATATGAAACCGAG 1662
Score = 2457 bits (1330), Expect = 0.0
Identities = 1448/1505 (96%), Gaps = 7/1505 (0%)
Strand=Plus/Plus
Query 1697 AGGTGAAATTGGGTGAAGATGGTTTATCTGGTGATGCAAAATGCAAGCAATCAGAAGTCG 1756
||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1661 AGGCGAAGTTGGGTGAAGATGGTTTATCTGGTGATGCAAAATGCAAGCAATCAGAAGTTG 1720
Query 1757 TTGGCAACGTGCATTGCGAAGAACATGTTGTAAACTTAAGAGATCCAGAAGCTATTCTTC 1816
|||||||||||||||| || || |||||||||||||||||||||||||||||||||||||
Sbjct 1721 TTGGCAACGTGCATTGGGATGAGCATGTTGTAAACTTAAGAGATCCAGAAGCTATTCTTC 1780
Query 1817 TCATCAAGCAACTACAAGAGAAGATAAACATGCTAGAATTGGAGAAGTCTTCAAGCAACC 1876
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1781 TCATTAAGCAACTCCAAGAGAAGATAAACATGCTAGAATTGGAGAAGTCTTCAAGCAACC 1840
Query 1877 GAAATCTTGATGATCTTGTTATGGTAGCTACTGAGCAGAATATATGTGCCAGGGAAAAAT 1936
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1841 GAAATCTTGATGATCTTGTCATGGTAGCTACTGAGCAGAATATATGTGCCAGGGAAAAAT 1900
Query 1937 TTGCTGAGATTCAAGAAGAGATTCATGCTGCTAGAGAAGAGGCCCAGGTTGCTCGTGAAC 1996
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1901 TTGCTGAGATTCAAGAAGAGATTCATGCTGCTAGAGAAGAGGCCCAGGTTGCTCGTGAAC 1960
Query 1997 AACTTGTGTCTAAGGAGTCTGAAGTTATTGATGTGATTAATGAGAATTTCAACTCACTGG 2056
|||||||||| |||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1961 AACTTGTGTCCAAGGAGTCTGAAGTTATTCATGTGCTTAATGAGAATTTCAACTCACTGG 2020
Query 2057 TCAACGTAGCAACCGAAA-TTGAAGTCTTAGAGTCTGAATTTCAAAAATATAAAGCATCA 2115
|||||||||||| | ||| |||||||||||||||||||||||| ||||||||||| ||||
Sbjct 2021 TCAACGTAGCAA-CAAAAGTTGAAGTCTTAGAGTCTGAATTTCGAAAATATAAAGTATCA 2079
Query 2116 GTAGAAACCATATCATCAGTTATGAATGAGGGTCTCCAAGATTTTGCTTTCTTCTCTCCG 2175
|| ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2080 GTGGAAACCATATCGTCAGTTATGAATGAGGGTCTCCAAGATTTTGCTTTCATCTCTCCT 2139
Query 2176 TTGATACATGATTTCACATTGTTTGTGCGCCAAAGTTCTGAGCAACATGATTCACTTATC 2235
|||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 2140 TTGATACATGATTTCACATTGTTTGTGCGCCAAATTTCTGAGCAACATGAGTCACTTATC 2199
Query 2236 AACAGCTACCAAACTGTCCAATCTAGTCTaaaaaaaaaaGTTCTTGATGTTGAGAATGAG 2295
||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2200 AACAGCTACCAAAGTGTCCAATCTAGTCTAAAACAAAAAGTTCTTGATGTTGAGAATGAG 2259
Query 2296 AAGCTTCTTTTGCAAGAGCAGTGTGCTGGTCTGCAGAGCCAAATAGAAGAACTAAATCAG 2355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2260 AAGCTTCTTTTGCAAGAGCAGTGTGCTGGTCTGCAGAGCCAAATAGAAGAACTAAATCAG 2319
Query 2356 GAAGCCCAAAAGCATGAAACTTCCTTAAAGATGCTCTCAGAACACCATGAGTCGGAGAGG 2415
||| |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 2320 GAATCCCAAAAGCATGAAACTTCCTTAATGATGCTCTCAGAAAACCATGAGTCGGAGAGG 2379
Query 2416 TCAGATCTACTCTCTCACATAGAATGTCTTGAAAAGGATATAGGGAGTCTGTCATCCTCT 2475
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2380 TCAGATCTACTCTCTCACATAGAATGTCTTGAAAAGGATATAGCGAGTCTGTCATCCTCT 2439
Query 2476 TCCTTGGCCAAAGAGAAGGAGAACCTAAGAAAAGATTTTGAGAAGACGAAAACAAAGCTA 2535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2440 TCCTTGGCCAAAGAGAAGGAGAACCTAAGAAAAGATTTTGAGAAGACGAAAACAAAGCTA 2499
Query 2536 AAAGACACTGAATCCAAGCTAAAGAATTCCATGCAAGATAAAACCAAGCTAGAGGCCGAG 2595
|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 2500 AAAGACACTGAATCAAAGCTTAAGAATTCCATGCAAGATAAAACCAAGCTAGAGGCTGAG 2559
Query 2596 AAAGCATCTGCTGAAAGAGAGTTAAAACGCTTGCATAGCCAGAAGGCCCTACTCGAGAGA 2655
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2560 AAAGCATCTGCTGAAAGAGAGTTAAAACGCTTGCATAGCCAGAAGGCCCTCCTCGAGAGA 2619
Query 2656 GACATCAGCAAACAGGAGTCCTTTGCTGGTAAAAGACGCGACTCTCTTCTTGTTGAGAGA 2715
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2620 GACATCAACAAACAGGAGTCCTTTGCTGGTAAAAGACGCGACTCTCTTCTTGTTGAGAGA 2679
Query 2716 AGTGCTAACCAGTCGTTGCAGGAAGAATTTAAACAGCTTGAAGTGCTTGCTTTTGAAATG 2775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2680 AGTGCTAACCAGTCGTTGCAGGAAGAATTTAAACAGCTTGAAGTGCTTGCTTTTGAAATG 2739
Query 2776 GAAACCACAATTGCTTCACTGGAGGAAGAGCTGGCCGCTGAACGTGGAGAAAAAGAGG-A 2834
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |
Sbjct 2740 GAAACCACAATTGCTTCACTGGAGGAGGAGCTGGCCGCTGAACGTGGAGAAAAA-AGGGA 2798
Query 2835 GGCACTCTGTAGAAATGACGGTTTAGGCTCAGAAATTACAGATCTGACAGAGAAACTGGA 2894
|||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 2799 GGCACTCTGTAGAAATGAGGGTTTAGATTCAGAAATTACAGATCTGACAGAGAAACTGGA 2858
Query 2895 GCACTCAAATACTAAACTAGAACATCTTCAAAACGATGTCACGGAGCTTAAAACGAGACT 2954
||||||||||||| ||||||||||||| ||||| |||||| | |||||||||||||||||
Sbjct 2859 GCACTCAAATACTCAACTAGAACATCTGCAAAAAGATGTCTCTGAGCTTAAAACGAGACT 2918
Query 2955 TGAAGTCTCATCTTCTGATCAGCAGCAACTGGAAACCAATGTTAAACAGTTGCTTGAAGA 3014
||||| |||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 2919 TGAAGGCTCATCTTCTGATCAGCAACAACTGGAAACCAATGTTAAGCAGTTGCTTGAAGA 2978
Query 3015 AAAGGAAGAGCTAGCAATGCATCTGGCGAACTCACTTTTGGAAATGGAGGAGGAGAAAGC 3074
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 2979 AAAGGAAGAGCTAGCAATGCATCTGGCGAACTCACTTTTAGAAATGGAGGAAGAGAAAGC 3038
Query 3075 AATATGGAGCTCGAAAGAAAAAGCTTTGACAGAGGCTGTGGAGGAAAAGATCAGACTATA 3134
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 3039 AATATGGAGCTCGAAAGAAAAAGCTTTGACAGAGGCCGTGGAGGAAAAGATCAGACTATA 3098
Query 3135 TAAAAATATACAAATTGAGTCACTATCCAAAGAAATGTCAGAGGAAAAGAAGGAGCTGGA 3194
|| ||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 3099 TAG---TATACAAATTGAGTCACTATCTAAAGAAATGTCAGAGGCAAAGAAGGAGCTGGA 3155
Query 3195 ATCTT 3199
|||||
Sbjct 3156 ATCTT 3160
Score = 457 bits (247), Expect = 3e-127
Identities = 270/281 (96%), Gaps = 2/281 (1%)
Strand=Plus/Plus
Query 3240 TTCTGAGGAGAATGCTAAGCAGGACAAAGAAAGCAGCCTGGAGAAGTCTTTGGAGATTGA 3299
||| |||||||||||||||||||| |||||| |||||||||||||||||||||| |||||
Sbjct 3159 TTCCGAGGAGAATGCTAAGCAGGAAAAAGAACGCAGCCTGGAGAAGTCTTTGGAAATTGA 3218
Query 3300 TAGACTGGGTGATGAACTTCGATCAGCTGATGCTGTGAGTAAGCAATCTCAAGAGGTTCT 3359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3219 TAGACTGGGTGATGAACTTCGATCAGCTGATGCTGTGAGTAAGCAATCTCAAGAGGTTCT 3278
Query 3360 CAAGTCTGATATCGACA-TACTAAAGTCCGAAGTTCAACATGCTTGCAAGATGTCGGATA 3418
||||| ||||||||||| | ||||||||||||||||||||||||||| ||||||| ||||
Sbjct 3279 CAAGTTTGATATCGACACT-CTAAAGTCCGAAGTTCAACATGCTTGCGAGATGTCAGATA 3337
Query 3419 CATTTCAGAGAGAGATGGATTATGTCACAAGTGAGCGCCAGGGTTTGCTAGCTCGCATAG 3478
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3338 CATTTCAGAGAGAGCTGGATTATGTCACAAGTGAGCGCCAGGGTTTGCTAGCTCGCATAG 3397
Query 3479 AGGAGTTGAGTAAGGAGCTTGCTTCATCAAATCGTTGGCAG 3519
|||||||||||||||| ||||||||||||||||||||||||
Sbjct 3398 AGGAGTTGAGTAAGGAACTTGCTTCATCAAATCGTTGGCAG 3438
Score = 385 bits (208), Expect = 2e-105
Identities = 222/229 (97%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 3590 AGGATGCAGCTGCAGAAAACAAGGAGAAGGCAAAGCTAAAAATGAGACTCAGGGGTATGC 3649
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 3437 AGGATGCAGCTGCAGAAAACAAGGAGAAGGCAAAGCTAAAAATGAGACTCAGGGGAACGC 3496
Query 3650 AAGCACGCTTAGATGCAATCAGTCTACGGTACAAGCAGTCTGTGCAAGAATCAGAACTTA 3709
||||||| |||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 3497 AAGCACGTTTAGATGCAATCAGTCTAAGGCACAAGCAGTCTGTGCAAGAATCAGAACTTA 3556
Query 3710 TGAACAGGAAGTTCAAAGAGGCATCTGCTAAGCTAAAGGAGAAGTTAGCATCAAAAGCAC 3769
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 3557 TGAACAGGAAGTTCATGGAGGCATCTGCTAAGCTAAAGGAGAAGTTAGCATCAAAAGCAC 3616
Query 3770 TCGAAGTTCTCGACCTCAAGAAGCAACTCTCTGCTTCTTCAAGAACAAT 3818
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3617 TCGAAGTTCTCGACCTCAAGAAGCAACTCTCTGCTTCTTCAAGAACAAT 3665
> Ahg902462 jgi|Araly1|902462|Al_scaffold_0004_3112
Length=1419
Score = 1129 bits (611), Expect = 0.0
Identities = 941/1097 (86%), Gaps = 35/1097 (3%)
Strand=Plus/Plus
Query 1 ATGGAGAGAATCCATGTCTCAGTCAGAGCGCGACCGCTTTCGTCGGAGGACGCGAAGACA 60
||||||||||||||||||||||||||||| || ||| ||||| |||| || || |||||
Sbjct 1 ATGGAGAGAATCCATGTCTCAGTCAGAGCACGGCCGGTTTCGCCGGATGAAGCAAAGACG 60
Query 61 AGTCCCTGGAAGATCTCTTCCGACTCAATTTTCATGCCCAATCACTCTTCTCTCGCTTTT 120
||||||||||| ||||||||| | ||||| ||||| | ||| || | | | ||| |||
Sbjct 61 AGTCCCTGGAAAATCTCTTCCAATTCAATCTTCAT-CTCAA--AC-CAGC-C-CGCGTTT 114
Query 121 GAATTTGATCGAATTTTTAGAGAAGATTGTAAAACTGTCCAAGTGTATGAGGCGCGGACG 180
|||||||| | |||| |||| ||||||| |||||| | | |||||||| || | ||
Sbjct 115 AAATTTGATAGGATTTATAGACAAGATTGCAAAACTATTGACGTGTATGAAGCTAGAACT 174
Query 181 AAGGAGATTGTTTCTGCCGCTGTTCGTGGATTCAACGGAACCGTATTTGCTTACGGGCAA 240
||||||||||| ||||| |||||||||||||||||||||| || ||||||| || |||
Sbjct 175 AAGGAGATTGTGTCTGCTACTGTTCGTGGATTCAACGGAACTGTGCTTGCTTATGGACAA 234
Query 241 ACTAACAGTGGCAAGACGCATACAATGCGAGGCTCACCTATTGAACCTGGAGTTATTC-C 299
|| || ||||||||||| ||||||||| |||||||| |||||||||||||| | | || |
Sbjct 235 ACAAATAGTGGCAAGACACATACAATGAGAGGCTCAACTATTGAACCTGGAATCA-TCTC 293
Query 300 TCTCGCTGTACATGATTTGTTTGACACTATATATCAGGATGCAAGTAGAGAGT-TTCTGT 358
||| ||||| |||||||||||||| | ||| | ||||||| |||| || || | || |||
Sbjct 294 TCTTGCTGTTCATGATTTGTTTGATATTATCTCTCAGGATACAAGCAGGGAATATT-TGT 352
Query 359 TGCGTATGTCGTACCTGGAGATTTATAATGAAGATATTAACGATTTGCTGG--CCCCTGA 416
|||| |||||||| || |||||||| |||||| |||| ||||||||| ||| || || |
Sbjct 353 TGCGCATGTCGTATCTTGAGATTTACAATGAAAATATAAACGATTTGTTGGATCCTCT-A 411
Query 417 GCACAGAAAACTACAGATTCATGAAAATCTAGAGAAAGGAATATTTGTTGCTGGATTACG 476
|||| ||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 412 -AACAGGAAACTACAGATTCATGAAAATCTAGAGAAAGGAGTATTTGTTGCTGGACTACG 470
Query 477 AGAAGAGATTGTCGCTTCCCCTCAACAAGTCCTTGAAATGATGGAATTTGGAGAATCTCA 536
|||||| ||||| | ||||||||||||||| |||||| ||||||||| ||||||||||||
Sbjct 471 AGAAGATATTGTTGATTCCCCTCAACAAGTTCTTGAATTGATGGAATGTGGAGAATCTCA 530
Query 537 TCGGCATATTGGGGAGACAAATATGAATCTTTACAGTAGCAGATCTCACAC-----T--- 588
| | ||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 531 TAGACATATTGGGGAGACAAATATGAATCATTACAGTAGCAGATCTCACACTATTTTCCG 590
Query 589 -AT--TTTTCG-C--A-TGATTATAGAAAGTAGACAGAAGATGCAAGATGAAGGTGTTGG 641
|| |||||| | | |||||||||||||||| | |||| || |||||||||||||||
Sbjct 591 CATGATTTTCGTCAAACAGATTATAGAAAGTAGAGAAAAGACGCGAGATGAAGGTGTTGG 650
Query 642 AAAT-TCCTGTGATGCAGTTCGTGTTTCTGTTCTGAATTTGGTGGATCTAGCTGGTTCAG 700
|||| | ||||||||| ||| |||| |||||||||||| |||||||||| ||||||||||
Sbjct 651 AAATGT-CTGTGATGCTGTTAGTGTCTCTGTTCTGAATGTGGTGGATCTTGCTGGTTCAG 709
Query 701 AACGGGCTGCAAAAACCGGTGCAGAGGGTGTTAGGTTGAAGGAGGGCT-CACATATAAAC 759
||||||||||||||||||| ||||| ||||||||| |||||||||| | ||||||||||
Sbjct 710 AACGGGCTGCAAAAACCGGCGCAGAAGGTGTTAGGCTGAAGGAGGG-TACACATATAAAT 768
Query 760 AAAAGCTTGATGACACTCGGGACTGTCATaaaaaaaCTGAGTGAAGGAGTAGAAACTCAA 819
||||||||||||||||| |||||||| || ||||| ||||||| ||||| |||| ||||
Sbjct 769 AAAAGCTTGATGACACTTGGGACTGTAATTAAAAAGTTGAGTGAGGGAGTTGAAAATCAA 828
Query 820 GGTGGTCATGTCCCGTACCGAGACAGCAAGCTTACAAGGATCTTGCAGCCTGCCTTAGGT 879
||||||||| |||| |||||||||||||||||||||||||| |||||||| || ||||||
Sbjct 829 GGTGGTCATATCCCATACCGAGACAGCAAGCTTACAAGGATTTTGCAGCCAGCTTTAGGT 888
Query 880 GGGAATGCCAACACAGCTATTATATGCAATATCACACTTGCACCGATTCATGCAGATGAA 939
|| ||||| || ||||| || ||||||||||| |||||||||| |||||||| | |||||
Sbjct 889 GGAAATGCAAATACAGCAATCATATGCAATATAACACTTGCACTGATTCATGTAAATGAA 948
Query 940 ACCAAGAGCAGTCTTCAGTTCGCTAGCCGAGCACTGCGTGTCACTAACTGTGCCCATGTC 999
||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 949 ACCAAGAGCAGTCTTCAATTCGCTAGCCGAGCACTGCGTGTCACTAACTGTGCGCATGTT 1008
Query 1000 AATGAGATTTTGACTGATGCTGCTCTATTAAAGCGCCAGAAG-AAGGAGATAGAGGAGCT 1058
|||||||| ||||||||| ||||| ||||||||||||| ||| ||||||||| |||||||
Sbjct 1009 AATGAGATATTGACTGATACTGCTTTATTAAAGCGCCA-AAGTAAGGAGATAAAGGAGCT 1067
Query 1059 CAGATCCAAACTAAAGA 1075
|||||||||||| ||||
Sbjct 1068 CAGATCCAAACTTAAGA 1084
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 144428489535
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5