BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G10190.1

Length=846
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg928707 jgi|Araly1|928707|scaffold_301164.1                        952    0.0  


> Ahg928707 jgi|Araly1|928707|scaffold_301164.1
Length=662

 Score =  952 bits (515),  Expect = 0.0
 Identities = 617/664 (93%), Gaps = 16/664 (2%)
 Strand=Plus/Plus

Query  1    AAATTCACACTATGAAACTCGCCAAACTAATTCCAAAACGTTTCTTCATCAGATCCAAAG  60
            ||| |||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||
Sbjct  12   AAA-TCACACTATGAAACTCACCAAATTAAATCCAAAACGTTTCTTCATCAGATCCAAAG  70

Query  61   ATCGTTCCACTGTCTCTAAGTCCCCCACGGCTTTTTCCTTCGGATCCGCTTCCTCATCTT  120
            | | ||||||||| ||||| |||| | || ||| ||||||||| ||||||||||||||||
Sbjct  71   ACCCTTCCACTGTTTCTAAATCCCACGCGACTTCTTCCTTCGGCTCCGCTTCCTCATCTT  130

Query  121  CCGGCCAAGACTGTAAAAACTCCGGTGGTGATGGCGGTGGCGGTTCCGTTACCCCGACTA  180
            |||||||||||||||||||||||         ||| |||||||||||||||| |||||||
Sbjct  131  CCGGCCAAGACTGTAAAAACTCC---------GGCTGTGGCGGTTCCGTTACGCCGACTA  181

Query  181  GCATTCTCCCGGAGGTTCCTTCTCCTTATTCCTACGTCGAGATTCTCCAAGCGTTTAAGT  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  182  GCATTCTCCCGGAGGTTCCTTCTCCTTATTCCTACGTCGAGATTCTCCAAGCGTTTAAGT  241

Query  241  TGATAGACAGAGACAACGACGGAGCTGTCTCTAGACACGATCTTGAGTCGTTACTTAGCC  300
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  242  TGATAGACAGAGACAACGATGGAGCTGTCTCTAGACACGATCTTGAGTCGTTACTTAGCC  301

Query  301  GGCTAGGTCCTGATCCTTTGACGGAGGAGGAGATCAACGTTATGCTTAAAGAGGTGGACT  360
            |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct  302  GGCTCGGTCCTGATCCTTTGACGGAGGAGGAGATCAACGTTATGATTAAAGAGGTGGA-T  360

Query  361  G-CGACGGCGACGGTACGATCCGTCTT-GAAGAGCTTGCGAGTCGTGTAGTCTCTTTAGA  418
            | ||||||||||||| | |||||| || ||||||||||||||| |||| |||||||||||
Sbjct  361  GGCGACGGCGACGGTGCCATCCGT-TTAGAAGAGCTTGCGAGTTGTGTCGTCTCTTTAGA  419

Query  419  TCCGGCTCGTGACTCGACTGAGCTGAAGGAGACTTTCGAGTTCTTTGACGCGGATCGTGA  478
            ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  420  TCCCGCTCGTGACTCGACTGAGCTGAAGGAGACTTTTGAGTTCTTTGACGCGGATCGTGA  479

Query  479  CGGTTTGATCTCGGCTGATGAGCTTCT-ACGAGTTTTCTCGACCATCGGAGATGAACGGT  537
            ||||||||||||||||||||||||||| | |||||||||||||||| |||||||||||||
Sbjct  480  CGGTTTGATCTCGGCTGATGAGCTTCTTA-GAGTTTTCTCGACCATTGGAGATGAACGGT  538

Query  538  GCACGTTAGATGATTGTAAGCGTATGATAGCAGATGTTGATGAGGACGGTGATGGTTTTG  597
            |||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||
Sbjct  539  GCACGTTAGATGATTGCAAGCGTATGATAGCAGATGTTGACGAGGACGGTGATGGATTTG  598

Query  598  TGTGCTTCACTGAGTTCTCACGAATGATGGATCTCCAGCGTTGATCTTCCCttttctttt  657
            | ||||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct  599  TATGCTTCAATGAGTTCTCACGAATGATGGATCTTCAGCGCTGATCTTCCCTTTTCTTTT  658

Query  658  tttt  661
            ||||
Sbjct  659  TTTT  662



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 31298914857


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5