BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G10195.1
Length=360
Score E
Sequences producing significant alignments: (Bits) Value
Ahg317819 jgi|Araly1|317819|fgenesh1_pm.C_scaffold_3000835 327 2e-89
> Ahg317819 jgi|Araly1|317819|fgenesh1_pm.C_scaffold_3000835
Length=240
Score = 327 bits (177), Expect = 2e-89
Identities = 225/247 (91%), Gaps = 8/247 (3%)
Strand=Plus/Plus
Query 36 ATGGAGAAAATTTCAGCATTCTTCGTCATTCTCTTCCTTGTCTCGTCGTGCTTGGTGACA 95
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 1 ATGGAGAAAATTTCAGCATTCTTCGTCATTCTCTTCCTTGTCTCGTCGTGCATGGTAACA 60
Query 96 ATGAGTGTTGGAGATATATGTCAAACGGATAGAGATTGTGTTGAGATTGGGATTCCAAGA 155
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 61 ATGAGTGTTGGAGATATATGTCAAACGGACAGAGATTGTGTGGAGATTGGGATTCCAAGA 120
Query 156 TGTAAGAGAACAGGAAAGATGCCGATTTGTTACAACGGATATTGTTGTTGTATCTGTTCT 215
||||||||||||||||||||||||||||||||||||||||||||| | ||| | | |
Sbjct 121 TGTAAGAGAACAGGAAAGATGCCGATTTGTTACAACGGATATTGTAGCTGT-T-T---C- 174
Query 216 GCTAAAAGACTTCCTGCTTCTACTACTCGAAAAC-CTCCTTCTCCATCAACCTCAAAATT 274
|||||||||| ||||||||| |||||||| || | |||||||| |||||||| | |||||
Sbjct 175 GCTAAAAGACCTCCTGCTTCCACTACTCGGAA-CTCTCCTTCTTCATCAACCACCAAATT 233
Query 275 AGTCTGA 281
|| |||
Sbjct 234 CGTTTGA 240
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12820277904
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5