BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G10200.1 Length=1958 Score E Sequences producing significant alignments: (Bits) Value Ahg928709 jgi|Araly1|928709|scaffold_301166.1 2145 0.0 Ahg487185 jgi|Araly1|487185|fgenesh2_kg.6__319__AT5G04060.1 1489 0.0 > Ahg928709 jgi|Araly1|928709|scaffold_301166.1 Length=1776 Score = 2145 bits (1161), Expect = 0.0 Identities = 1284/1344 (96%), Gaps = 5/1344 (0%) Strand=Plus/Plus Query 468 TTAAA-GGTGGCCAAAATTGGGTCCATGAGCAAGGTCAGTTTTGGTGGTTCCCTGGTGGT 526 ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 436 TTAAAGGGTGGCCAAAATTGGGTGCATGAGCAAGGTCAGTTTTGGTGGTTCCCTGGTGGT 495 Query 527 GGTACTCATTTTAAGCATGGAGCTGCAGAATACATCCAGAGGTTGGGGAATATGATGACT 586 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 496 GGTACTCATTTTAAGCATGGAGCTGCAGAATATATCCAGAGGTTGGGGAATATGATGACT 555 Query 587 AATGAAACAGGTGACTTGCGTTCAGCTGGGGTGGTACAAGTTCTTGATGTTGGCTGTGGA 646 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 556 AATGAAACAGGTGACTTTCGTTCAGCTGGGGTGGTACAAGTTCTTGATGTTGGCTGTGGC 615 Query 647 GTTGCGAGCTTTGCGGCTTATCTTCTTCCCTTAGGTATACAGACAATTTCATTTGCTCCC 706 |||| ||||||||| |||||||||||||| ||||||||||||||||| |||||||||||| Sbjct 616 GTTGTGAGCTTTGCCGCTTATCTTCTTCCTTTAGGTATACAGACAATGTCATTTGCTCCC 675 Query 707 AAAGATGGTCATGAAAACCAGATTCAGTTTGCATTGGAGAGAGGCATTGGTGCAATGATA 766 |||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||| Sbjct 676 AAAGATGGTCATGAAAACCAGATTCAGTTTGCATTGGAAAGAGGCATCGGTGCTATGATA 735 Query 767 TCCGCGGTTGCCACCAAACAATTGCCATATCCTGCAGCCTCGTTTGAGATGGTTCATTGT 826 ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| Sbjct 736 TCCGCGGTTGCCACCAAACAAATGCCTTATCCTGCAGCCTCGTTTGAGATGGTTCATTGT 795 Query 827 TCGAGATGTCGTGTTGACTGGCATACAAATGATGGCATCTTACTTAAAGAAGTTCATCGT 886 ||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||| Sbjct 796 TCGAGATGTCGTGTTGATTGGCATGCAAATGATGGCATCTTACTAAAAGAAGTTCATCGT 855 Query 887 CTTCTCCGACCAAATGGATTCTTCGTGTATTCATCACCACCAGCATATAGAAAGGATAAA 946 ||||||||||||||||||||||| ||||||||||| |||||||| |||||||| |||||| Sbjct 856 CTTCTCCGACCAAATGGATTCTTTGTGTATTCATCGCCACCAGCTTATAGAAATGATAAA 915 Query 947 GAGTATCCTATGATTTGGGATAAGTTGGTCAATCTAACTAGTGCAATGTGCTGGAAGCTT 1006 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 916 GAGTATCCTATGATCTGGGATAAGTTGGTCAATCTAACTAGTGCAATGTGCTGGAAGCTC 975 Query 1007 ATTTCCCGGAAGGTACAGACTGCAATATGGATTAAAGAAGAGAAGGAGGTTTGTCTTAAG 1066 |||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||| | Sbjct 976 ATTTCCCGGAAGGTACAGACTGCAATATGGATTAAAGACGAGAATGAGGTGTGTCTTAGG 1035 Query 1067 CAGAAAGCAGAGCTAAAGCTAATAAGTTTATGTGATGTGGAAGATGTTTTGAAACCATCA 1126 ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1036 CAGAATGCAGAGCTAAAGCTCATAAGTTTATGTGATGTGGAAGATGTTTTGAAACCATCA 1095 Query 1127 TGGAAAGTTCCTCTTAAAGATTGTGTGCAAATCAGTGGACAAACAGAAGAGAGACCCTCT 1186 ||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1096 TGGAAAGTTACTCTGAGAGATTGTGTGCAAATCAGTGGACAAACAGAAGAGAGACCCTCT 1155 Query 1187 TCTTTAGCTGAACGTCTTTCTGCATATCCAGCAACTCTAAGAAAAATAGGGATCAGTGAA 1246 ||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||| Sbjct 1156 TCTTTAGCTGAACGTCTTTCTGCGTATCCGGGGACTCTAAGAAAAATAGGGATCAGTGAA 1215 Query 1247 GATGAATATACATCAGATACAGTGTTCTGGAGAGAACAAGTTAATCATTACTGGCGGTTA 1306 ||||||||||||||||||||||| | ||||||||||||||||||||| || ||||||||| Sbjct 1216 GATGAATATACATCAGATACAGTCTACTGGAGAGAACAAGTTAATCACTATTGGCGGTTA 1275 Query 1307 ATGAATGTCAATGAGACTGAAGTAC-GGAATGTGATGGACATGAACGCATTCATTGGTGG 1365 ||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||| Sbjct 1276 ATGAATGTCAATGAGACTGAAGT-CAGGAATGCGATGGACATGAACGCATTCATTGGTGG 1334 Query 1366 TTTTGCTGCAGCTATGAATTCGTATCCTGTTTGGGTAATGAACATAGTACCTGCAACCAT 1425 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1335 GTTTGCTGCAGCTATGAATTCGTATCCTGTTTGGGTAATGAACATAGTACCTGCTACCAT 1394 Query 1426 GAATGATACCTTGTCTGGAATTTTCGAGAGAGGCTTAAATGGCGCTTTCCATGATTGGTG 1485 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1395 GAATGATACCTTGTCTGGAATTTTCGAGAGAGGCTTAAATGGAGCTTTCCATGATTGGTG 1454 Query 1486 TGAGGCGTTCTCAACATATCCACGCACGTATGATTTGGTGCATTCCGATCATGTCTTCTC 1545 ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| Sbjct 1455 TGAGGCGTTCTCAACATATCCTCGCACGTATGATTTGCTGCATTCCGATCATGTCTTCTC 1514 Query 1546 TCACTACAACAAAAGCTACGGAGATGGTTGTTTGCTAGAGGATATCATGCTTGAGATGGA 1605 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1515 TCATTACAACAAAAGCTACGGAGATGGTTGTTTGCTAGAGGATATCATGCTTGAGATGGA 1574 Query 1606 CCGCATAGTTCGCCCTCAGGGGTTTGTCATAATAAGGGACGAGGAATATATCATCTCAAG 1665 ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 1575 CCGCATAGTTCGCCCTCAGGGGTTTATCATAATAAGGGACGAGGAATCTATCATCTCAAG 1634 Query 1666 GATCCGAGGCTTGGCTCCAAAATTCTTGTGGGAAGTGGAAACTCATGAGCTTGAAAACAA 1725 |||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||| Sbjct 1635 GATCCGAGACTTGGCTCCTAAATTATTGTGGGAAGTGGAAACTCATGAGCTTGAAAACAA 1694 Query 1726 AGACAAGAAGATAACAGAGTCTGTTTTGTTTTGCAGAAAGAGATTCTGGGCAATCATTTG 1785 |||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||| Sbjct 1695 AGACAAGAAGATGACAGAGACTGTTTTGTTTTGCAGAAAGAGATTCTGGGCTATCATTTG 1754 Query 1786 AAATAGACTCACTATTTTTAGCTC 1809 || ||||||| |||||||| |||| Sbjct 1755 AA-TAGACTCGCTATTTTT-GCTC 1776 Score = 595 bits (322), Expect = 3e-169 Identities = 394/427 (92%), Gaps = 12/427 (3%) Strand=Plus/Plus Query 1 GACAGAAACAATGAGAGGTTCTGTAATTGGTGCAGAGAGATCCGGGCAGACGATAATGGT 60 ||||||||||||| |||||||||| ||||||||| |||||| ||||||||||||||||| Sbjct 21 GACAGAAACAATGGGAGGTTCTGTGTTTGGTGCAGCGAGATCAGGGCAGACGATAATGGT 80 Query 61 GGCTCTCGTTCTTATGGTTGGATCATTTTACACTGGCTCTCTCTTCGGAACCAACCAACC 120 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 81 TGCTCTCGTTCTTATGGTTGGATCATTTTACACTGGCTCTCTCTTCGGAACCAACCAACC 140 Query 121 CATTTACGTCTCTCATCCTTCTTCTCACTCTGCTTCTTCCAAATTTGCAAACAAAATTGA 180 ||||||||||||||| |||||||||||| |||||||||||||||||||||||||| | | Sbjct 141 CATTTACGTCTCTCAACCTTCTTCTCACCCTGCTTCTTCCAAATTTGCAAACAAAGTCGC 200 Query 181 GCTTACTTATAGAAGATTACCACTAGTCATACCTGAATCTGGGATGAATGTGTGTCCACT 240 |||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| | Sbjct 201 GCTTACTTATAGGAGATTACCACTAGTCATACCTGAAACTGGGATGAATGTGTGTCCATT 260 Query 241 GGAGTTCAATGAGTATATACCTTGTCACAATGTCACCTATGTGCATCAGCTGCTACCAAG 300 |||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||| Sbjct 261 GGAGTTCAATGAGTATATCCCTTGTCACAATGTCACTTATGTGCATCAGCTGCTTCCAAG 320 Query 301 CTTGAATCTTTCTAGAAGAGAAGACCTCGAAAGGCATTGCCCGCCACTCGAGCACCGCCT 360 |||||||||||||||||||||||| |||||||||||||||||||||||||||||| | Sbjct 321 CTTGAATCTTTCTAGAAGAGAAGAGCTCGAAAGGCATTGCCCGCCACTCGAGCAC----T 376 Query 361 TTTTTGCTTGGTACCTCCGCCAAATGATTATAAGATACCTATTAGATGGCCAACCAGTAG 420 | | | ||||||| ||||||||||||||||||||||| | ||||||||||||||| Sbjct 377 T----G---G-TACCTCCACCAAATGATTATAAGATACCTATAAAATGGCCAACCAGTAG 428 Query 421 AGACTAT 427 ||||||| Sbjct 429 AGACTAT 435 > Ahg487185 jgi|Araly1|487185|fgenesh2_kg.6__319__AT5G04060.1 Length=1998 Score = 1489 bits (806), Expect = 0.0 Identities = 1487/1806 (82%), Gaps = 86/1806 (5%) Strand=Plus/Plus Query 38 AGATCCGGG-CAGACGATAATGGTGGCTCTCGTTCTTATGGTTGGATCATTTTACACTGG 96 |||| |||| |||||||||||||||||||| ||||| |||||||||||||||||| | || Sbjct 56 AGAT-CGGGACAGACGATAATGGTGGCTCTGGTTCTAATGGTTGGATCATTTTACGCAGG 114 Query 97 CTCTCTCTTCGGAACCAA----CC-A-ACCCATTT----A-CGTC-TC-TCATCC--TTC 141 |||| ||||||||| ||| || | ||||| | | || || || ||| ||| Sbjct 115 CTCTATCTTCGGAAACAATTCTCCTATTTACATTTCCCAACCTTCTTCTTCTTCCAATTC 174 Query 142 TTC-TC-AC-TCTGC-T-----TCT--T-C--CAAA-TTTGCAAACAAAATTGAGCTTAC 186 ||| || | ||| | | ||| | | |||| ||||| ||||| || |||||||| Sbjct 175 TTCTTCTTCTTCTCCATCACAATCTGGTCCATCAAATTTTGCTAACAAGATAGAGCTTAC 234 Query 187 TTA-TAGAAGATTACCACTAG--TC-ATACCTG-AATCTGGGATGAATGTGTGTCCACTG 241 ||| || ||| || || | || || |||| | |||| ||||||| |||||| || Sbjct 235 TTACCAG-AGA--ACTTCT-GTTTCGATCCCTGCGA-GTGGGGTGAATGTTTGTCCATTG 289 Query 242 GAGTTCAATGAGTAT-ATACCTTGTCACAATGTCACCTATGTGCATCAGCTGCTACCAAG 300 |||||||||||||| || ||||||||||||||||| |||||||| ||||| || ||||| Sbjct 290 AAGTTCAATGAGTATAAT-CCTTGTCACAATGTCACTTATGTGCAACAGCTTCTCCCAAG 348 Query 301 CTTGAATCTTTCTAGAAGAGAAGACCTCGAAAGGCATTGCCCGCCACTCGAGCACCGCCT 360 |||||||||||||||||||||||| || || || || || |||||||| || || || | Sbjct 349 CTTGAATCTTTCTAGAAGAGAAGAGCTTGAGAGACACTGTCCGCCACTTGAACAGCG-TT 407 Query 361 T-TTTTGCTTGGTACCTCCGCCAAATGATTATAAGATACCTATTA-GATGGCCAACCAGT 418 | ||||| ||||| ||||||||||| |||||||||||||| | || | |||||||| || Sbjct 408 TGTTTTGTTTGGTGCCTCCGCCAAAAGATTATAAGATACC-AATACGCTGGCCAACTAGC 466 Query 419 AGAGACTATGTATGGAGAAGTAATGTGAACCATACACATCTTGCTCAAGTTAAAGGTGGC 478 ||||| |||||||||||||| |||||||| ||||| ||||||||| |||| ||||| ||| Sbjct 467 AGAGATTATGTATGGAGAAGCAATGTGAATCATACGCATCTTGCTGAAGTGAAAGGCGGC 526 Query 479 CAAAATTGGGTCCATGAGCAAGGTCAGTTTTGGTGGTTCCCTGGTGGTGGTACTCATTTT 538 || |||||||| ||||| |||||||| || ||||||||||||||||| ||||||||||| Sbjct 527 CAGAATTGGGTGCATGAACAAGGTCAATTATGGTGGTTCCCTGGTGGCGGTACTCATTTC 586 Query 539 AAGCATGGAGCTGCAGAATACATCCAGAGGTTGGGGAATATGATGACTAATGAAACAGGT 598 || || |||||| ||||||||||||||||||| || || |||| ||||||||||||||| Sbjct 587 AAACACGGAGCTCCAGAATACATCCAGAGGTTAGGAAACATGACAACTAATGAAACAGGT 646 Query 599 GA-CTTGCGTTCAGCTGGGGTGGTACAAGTTCTTGATGTTGGCTGTGGAGTTGCGAGCTT 657 || ||| ||||||||||| || | |||||||||||||||||| ||||||||||| ||||| Sbjct 647 GACCTT-CGTTCAGCTGGTGTTGAACAAGTTCTTGATGTTGGATGTGGAGTTGCTAGCTT 705 Query 658 TGCGGCTTATCTTCTTCCCTTAGGTATACAGACAATTTCATTTGCTCCC-AAAGATGGTC 716 ||| |||||||||||||| ||||||||| ||||||| || ||||| ||| |||||||||| Sbjct 706 TGCAGCTTATCTTCTTCCTTTAGGTATAAAGACAATGTCTTTTGC-CCCTAAAGATGGTC 764 Query 717 ATGAAAACCAGATTCAGTTTGCATTGGAGAGAGGCATTGGTGCAATGATATCCGCGGTTG 776 |||||||||| || |||||||| ||||||||||| || || |||||||| || || | | Sbjct 765 ATGAAAACCAAATCCAGTTTGCGTTGGAGAGAGGAATCGGCGCAATGATCTCTGCCATAG 824 Query 777 CCACCAAACAATTGCCATATCCTGCAGCCTCGTTTGAGATGGTTCATTGTTCGAGATGTC 836 ||||||||||| |||||||||| || ||||||||||| |||||||| ||||| ||||||| Sbjct 825 CCACCAAACAAATGCCATATCCCGCGGCCTCGTTTGATATGGTTCACTGTTCAAGATGTC 884 Query 837 GTGTTGACTGGCAT-ACAAATGATGGCATCTT-ACTTAAAGAAGTTCATCGTCTTCTCCG 894 ||||||| |||||| | ||||||||| ||||| | ||||||| ||| ||||||||||||| Sbjct 885 GTGTTGATTGGCATGA-AAATGATGGTATCTTGA-TTAAAGAGGTTAATCGTCTTCTCCG 942 Query 895 ACCAAATGGATTCTTCGTGTATTCATCACCACCAGCATATAGAAAGGATAAAGAGTAT-C 953 ||| ||||||| ||| || |||||| ||||||| ||||| |||||||||||||| | | | Sbjct 943 ACCCAATGGATACTTTGTTTATTCAGCACCACCTGCATACAGAAAGGATAAAGA-TTTCC 1001 Query 954 CTATGATTTGGGATAAGTTGGTCAATCTAACTAGTGCAATGTGCTGGAAGCTTATTTCCC 1013 ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| Sbjct 1002 CTATGATTTGGGATAAGTTGGTCAATCTAACTACCGCAATGTGCTGGAAGCTCATTTCCC 1061 Query 1014 GGAAGGTACAGACTGCAATATGGATTAAAGAAGA-GAAGGAGGTTTGTCTTAAGCAGAAA 1072 | ||||||||||||||||||||| |||||||||| || | ||| ||| |||| | |||| Sbjct 1062 GAAAGGTACAGACTGCAATATGGGTTAAAGAAGATGACG-AGGCTTGCCTTAGGAAGAAT 1120 Query 1073 GCAGAGCTAAAGCTAATAAGTTTATGTGATGTGGAAGATGTTTTGAAACCATCATGGAAA 1132 ||||||||| |||| |||| | |||||||||| |||||||||| |||| | |||||||| Sbjct 1121 GCAGAGCTAGAGCTTATAACTATATGTGATGTAGAAGATGTTTCGAAAGCTTCATGGAAC 1180 Query 1133 GTTCCTCTTAAAGATTGTGTGCAAATCAGTGGACA-A-ACAGAAGAGAGACCCTCTTCTT 1190 |||||||||| ||| |||||| | || |||| | | | ||| |||| | ||||||||||| Sbjct 1181 GTTCCTCTTAGAGACTGTGTGGACATTAGTGAAAACATACAAAAGA-A-ACCCTCTTCTT 1238 Query 1191 TAGCTGAACGTCTTTC-TGCATATCCAGCAACTCTAAGA-AAAATAGGGATCAGTGAAGA 1248 | ||| ||||| || | |||||||| ||| ||||| | |||| ||| ||| | ||||| Sbjct 1239 CAACTGGCCGTCTATCGT-CATATCCAACAAGTCTAACAGAAAA-AGGCATCGGCGAAGA 1296 Query 1249 TGAATATACATCAGATACAGTGTTCTGGAGAGAACAAGTTAATCATTACTGGCG-GTTAA 1307 ||||| | ||| || ||| ||||||||||||||||| ||||| |||||| | ||||| Sbjct 1297 TGAATTTGCATTGGACACAAACTTCTGGAGAGAACAAGTGAATCAGTACTGG-GAGTTAA 1355 Query 1308 TGAATGTCAATGAGACTGAAGTACGGAATGTGATGGACATGAACGCATTCATTGGTGGTT 1367 ||||||| ||| |||||||||| || ||||||||||||| || ||| ||||||||| | Sbjct 1356 TGAATGTTAATAAGACTGAAGTGCGAAATGTGATGGACACAAATGCAGCCATTGGTGGAT 1415 Query 1368 TTGCTGCAGCTATGAATTCGTATCCTGTTTGGGTAATGAACATAGTACCTGCAACCATGA 1427 |||| ||||| ||||| || ||||| |||||||| |||||| | |||||||| || |||| Sbjct 1416 TTGCCGCAGCCATGAACTCATATCCCGTTTGGGTCATGAACGTTGTACCTGCTACGATGA 1475 Query 1428 ATGATACCTTGTCTGGAATTTTCGAGAGAGGCTTAAATGGCGCTT-TCCATGATTGGTGT 1486 | |||||||| || ||||||| | |||| ||||||| ||| |||| || ||||||||||| Sbjct 1476 ACGATACCTTATCCGGAATTTACCAGAGGGGCTTAACTGGTGCTTATC-ATGATTGGTGT 1534 Query 1487 GAGGCGTTCTCAACATATCCACGCACGTATGATTTGGTGCATTCCGATCATGTCTTCTCT 1546 ||| | |||||||| ||||| || || || ||| || | || | || ||| | ||| || Sbjct 1535 GAGCCATTCTCAACGTATCCCCGTACTTACGATCTGCTACACGCGGACCATCTTTTCGCT 1594 Query 1547 CACTACAACAAAAGCTACGGAGATGGTTGTTTGCTAGAGGATATCATGCTTGAGATGGAC 1606 ||||| || || | |||| || |||||||| |||||||| || ||||||||||||||| Sbjct 1595 CACTATAA-AATC-C-ACGGTGAAGGTTGTTTACTAGAGGACATGATGCTTGAGATGGAC 1651 Query 1607 CGCAT-AGTTCGCCCTCAGGGGTTTGTCATAATAAGGGACGAGGAAT-ATATCATCTCAA 1664 ||||| | | ||||||||||| || |||| || || |||||||||| | |||||||| | Sbjct 1652 CGCATTA-TACGCCCTCAGGGATTCATCATTATCAGAGACGAGGAATCA-ATCATCTCGA 1709 Query 1665 G-GATCCGAGGCTTGGCTCCAAAATTC-TTGTGGGAAGTGGAAACTCATGAGCTTGAAAA 1722 | | |||||| ||||||||| || ||| || |||||||| ||||| ||||||||| || | Sbjct 1710 GAG-TCCGAGACTTGGCTCCTAAGTTCCTT-TGGGAAGTTGAAACACATGAGCTTCAAGA 1767 Query 1723 CAAAGACAAGAAGATAACAGAGTCTGTTTTGTTTTGCAGAAAGAGATTCTGGGCAATCAT 1782 |||| ||||||||| |||| ||||| | ||||||||||||| ||| ||||||||| | Sbjct 1768 CAAATACAAGAAGA---CAGAAACTGTTCTATTTTGCAGAAAGATATTTTGGGCAATCGT 1824 Query 1783 TTGAAA 1788 |||||| Sbjct 1825 TTGAAA 1830 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 73590353340 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5