BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G10210.1
Length=928
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928710 jgi|Araly1|928710|scaffold_301167.1 1177 0.0
> Ahg928710 jgi|Araly1|928710|scaffold_301167.1
Length=754
Score = 1177 bits (637), Expect = 0.0
Identities = 717/756 (95%), Gaps = 4/756 (1%)
Strand=Plus/Plus
Query 16 GGAGGAGGAATATTCCGGTGATGGCTGAAGATTTTTCGGTGGTTGTGTTGGCTTCTGATC 75
|||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 1 GGAGGAGGAATATTCCGGCGATGGCGGAAGATTTTTCGGTGGTTGTGTTGGCTTCTGATC 60
Query 76 TAGGAATTGACGCTAGACCCTTCTTGACGAGAAGCGATGACGTTGATGAACAAGAAAACT 135
|||||||||| ||| |||| ||||| |||||||||||||| |||||||||||||| ||||
Sbjct 61 TAGGAATTGATGCTCGACCGTTCTTAACGAGAAGCGATGAGGTTGATGAACAAGAGAACT 120
Query 136 GGCATGATTGTCCCCAATACT-TAGGAGATGAAGATTTCTCTGATCTCGATCTTCTCCAG 194
|||| |||||||| ||||| | | | ||||||||||||||||||||||||||||||||||
Sbjct 121 GGCACGATTGTCCTCAATA-TCTCGAAGATGAAGATTTCTCTGATCTCGATCTTCTCCAG 179
Query 195 TTCTTTACTCTCCAGGGCTTGGATAGGTCCGGTAACCGGATTTTCCGCATCGTCGGAAAG 254
||||| || ||||| |||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 180 TTCTTCACACTCCAAGGCTTGGATAAGTCCGGTAACCGGATTTTCCGCGTCGTCGGAAAG 239
Query 255 TATTTCCCTGCTCGTGTAGTGAGTGCGGAGCGGCTGAAGAAGTATATATCCCAGAAGATA 314
||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||
Sbjct 240 TATTTCCCTGCTCGTGTTGTGAGTGCAGAGCGGCTGAAGAAGTATATATTCCAGAAGATA 299
Query 315 AGCAACCAATGTCCTGAGGGACCTTTGTGCTTGGTTTACATGCATAGCACAGTCCAAAAG 374
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 300 AGCAACCAATGTCCTGAGGGACCCTTGTGCTTGGTTTACATGCATAGCACAGTGCAAAAG 359
Query 375 GACGACAATTCACCGGGAATTACCATCTTACGGTGGATTTACGAGGACCTTCCTTCAGAT 434
||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 360 GACGAAAACTCACCGGGAATTACCATTTTACGGTGGATTTACGAGGACCTTCCTTCAGAT 419
Query 435 ATCAAAGACAGGCTTCAACTTGTTTATTTCATCCACCCTGGTCTTCGTTCAAGACTTGTC 494
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 420 ATCAAAGACAGGCTTCAACTTGTTTATTTCATCCACCCTGGTCTTCGTTCCAGACTTGTC 479
Query 495 ATTGCCACTCTTGGCCGCCTTCTTTTAAGTGGAGGACTGTACTGGAAGATTAAGTACGTG 554
||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||
Sbjct 480 ATTGCCACTCTTGGCCGTCTTCTTCTAAGTGGAGGACTGTACTGGAAGATTAAGTATGTG 539
Query 555 AGCAGGTTGCAGTACCTTTGGGAGGACATAAAGAAAGGCGAGGTGGAAATTCCCGACTTT 614
|||||||||||||| ||||||||||| ||||||||||| ||||| |||||||||||||||
Sbjct 540 AGCAGGTTGCAGTATCTTTGGGAGGAAATAAAGAAAGGTGAGGTAGAAATTCCCGACTTT 599
Query 615 GTGAAGAACCATGACAATGTGCTCGAGCATAGACCATTAACGGACTATGGAATCGAACCG 674
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GTGAAGAACCACGACAATGTGCTCGAGCATAGACCATTAACGGACTATGGAATCGAACCG 659
Query 675 GATCCTTTCCAGTTAAGC-GAGGTTCAATCTTCATCGTTCTCTCTCAACCGCTACGAGAA 733
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 660 GATCCTTTCCAGTTA-GCAGAGGTTCAATCTTCATCGTTCTCTCTCAACCGCTACGAGAA 718
Query 734 CAGATGGGTCTCATAGTACAATTGCTCTTTGTTGAG 769
|||||||||||||||||||| |||||||||||||||
Sbjct 719 CAGATGGGTCTCATAGTACATTTGCTCTTTGTTGAG 754
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34424994051
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5