BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G10220.1
Length=1058
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928711 jgi|Araly1|928711|scaffold_301168.1 1273 0.0
Ahg478348 jgi|Araly1|478348|fgenesh2_kg.3__1049__AT3G10230.1 222 4e-57
> Ahg928711 jgi|Araly1|928711|scaffold_301168.1
Length=774
Score = 1273 bits (689), Expect = 0.0
Identities = 744/771 (96%), Gaps = 1/771 (0%)
Strand=Plus/Plus
Query 115 AGGTCTAGAGGTG-AAAAAATGGCAACTTCGCGTTTACAGTTGGAAGGAGATGACTCTGT 173
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4 AGGTCTAGAGGTGAAAAAAATGGCAACTTCGCGTTTACAGTTGGAAGGAGATGACTCTGT 63
Query 174 ACATCTACACATTACTCACGCCAACCTTAAAAGCTTCTCTGCGGACGCTCGTTTCTCTCC 233
||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||
Sbjct 64 TCATCTACACATTACTCATGCCAACCTTAAAAGCTTCTCTGCGGATGTTCGTTTCTCTCC 123
Query 234 GCAAATGAGTGTAGAAGCTGTGAAAGAAAAGCTATGGAAGAAATGTGGTACATCTGTTAA 293
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 124 ACAAATGAGTGTAGAAGCTGTGAAAGAAAAGCTATGGAAGAAATGTGGTACATCTGTTAA 183
Query 294 TTCCATGGCTTTAGAGCTCTATGATGACTCTGGCTCAAAGGTTGCAGTTCTCAGTGATGA 353
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 184 TTCCATGGCTTTAGAGCTCTATGATGACTCTGGCTCAAAGGTTGCAGTTCTCAGTGATAA 243
Query 354 TTCTAGACCTCTTGGTTTCTTCTCTCCTTTTGATGGGTTTCGGTTACACATCATAGATCT 413
||| |||||||| ||||||||||| ||||||||||||||||| || ||||||||||||||
Sbjct 244 TTCAAGACCTCTCGGTTTCTTCTCCCCTTTTGATGGGTTTCGCTTGCACATCATAGATCT 303
Query 414 TGACCCCTCCTCGGTCACAACTGGAGGCTGGCTTGAAGATACGTCACTGGTTGAGAAGTA 473
|||||| || || ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 304 TGACCCGTCGTCAGTCACAACTGGAGGCTGGCTTGAAGATACATCACTGGTTGAGAAGTA 363
Query 474 TAACATCTCAGAGGAGGATTATGCTAAACGAACTGACAGTTTTAGGAAATTCAAAGAAAA 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 364 TAACATCTCAGAGGAGGATTATGCTAAACGAACTGACAGTTTTAGGAAATTCAAAGAAAA 423
Query 534 GAGAGTTTCTCAAAATCCGGTTGCTGCTGAGGCTAAGACGAAAGAGAACTATATGGAAGA 593
||||| ||||||| ||||| ||||||||||||||||||||| |||||||| ||||||||
Sbjct 424 AAGAGTGTCTCAAATTCCGGCTGCTGCTGAGGCTAAGACGAAGGAGAACTACATGGAAGA 483
Query 594 TCTCTGCGCAAATATCAAGGTGGGAGATAGATGCCAAGTTGAGCCTGGGGAGAAAAGAGG 653
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 484 TCTCTGTGCAAATATCAAGGTGGGAGATAGATGCCAAGTTGAGCCTGGGGAGAAAAGAGG 543
Query 654 AATGGTCAAATATGTTGGACGAGCAGAGTCGTTGGGTCCTGGCTATTGGGTTGGAATTCA 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 544 AATGGTCAAATATGTTGGACGAGCAGAGTCGTTGGGTCCTGGCTATTGGGTTGGAATTCA 603
Query 714 GTATGATGAGCCCCTTGGAAAACATGATGGCATGGTGAAAGGAACAAGATTCTTTGAGTG 773
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 604 GTATGATGAACCCCTTGGAAAACATGATGGCATGGTGAAAGGAACAAGATTCTTTGAGTG 663
Query 774 CCCTCGGCTTCAAGGTGGTATGGTCAGGCCTGACAAAGTAAAGGTTGGTGATTATCCGGA 833
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 664 CCCTCCGCTTCAAGGTGGTATGGTCAGGCCTGACAAAGTAAAGGTTGGTGATTATCCGGA 723
Query 834 AAGAGACCCTTTCGAGGAAGATGAAATATAAGACTTTCACGAAAGCATCAA 884
||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 724 AAGAGACCCTTTCGAGGAAGATGAAATATAAGATTTTCACGGAAGCATCAA 774
> Ahg478348 jgi|Araly1|478348|fgenesh2_kg.3__1049__AT3G10230.1
Length=1953
Score = 222 bits (120), Expect = 4e-57
Identities = 148/161 (92%), Gaps = 4/161 (2%)
Strand=Plus/Minus
Query 902 GAGTTTGAAAGATTTGCTTTTGTGTTCAAAATCCACTCTTTTATCTTATTACATTTTGCC 961
|||||||||||| |||||||||||||||| ||| | ||||||||||||||||||||||||
Sbjct 1953 GAGTTTGAAAGAGTTGCTTTTGTGTTCAACATCAATTCTTTTATCTTATTACATTTTGCC 1894
Query 962 TCTAGTTTTGGATTTACAAGAGTTGGTGAAA-CACAATGCAGCACAAAGTATTAATTTTA 1020
||||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||
Sbjct 1893 TCTAGTTTTGGATTTACAAGAGTTGGTGAAAACACGATGCAGCACAAAATATTAATTTTA 1834
Query 1021 ATGAAC--TAG-TAGTAACAATTTGATTTCACAAGGATTCA 1058
||||| || |||||||| ||||||||||||||||||||
Sbjct 1833 ATGAAGAATAACTAGTAACACTTTGATTTCACAAGGATTCA 1793
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39380973261
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5