BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G10250.1
Length=1414
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478351 jgi|Araly1|478351|fgenesh2_kg.3__1052__AT3G10250.1 2025 0.0
Ahg487187 jgi|Araly1|487187|fgenesh2_kg.6__321__AT5G04090.2 411 9e-114
> Ahg478351 jgi|Araly1|478351|fgenesh2_kg.3__1052__AT3G10250.1
Length=1317
Score = 2025 bits (1096), Expect = 0.0
Identities = 1268/1346 (94%), Gaps = 31/1346 (2%)
Strand=Plus/Plus
Query 1 GGAGTAAAGAAATTGATCCACGATCGATCAACAAAGTGAGGTTAGGTTCCATCTCCACCT 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1 GGAGTAAAGAAATTGATCCACGATCGATCAACAAAGTGAGGTTAGGTTCCATCT-CATCT 59
Query 61 -CT-TTCTCTCTCGAATCTTCTCCGATTAAAGGAACAAGGTCTGGTTTACAAAAGTCTCA 118
|| |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 60 CCTCTTCTCTCTCGAATCTTCTTCGATTAAAGGAACAAGGTCTGGTTTACAAAAGTCACA 119
Query 119 TAGATGTCGAGTGGAACAGTGAGAAGGGTTTCACGTCAAGATATACAACTGGTTCAAAAC 178
||||||| |||||| |||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 120 GAGATGTCAAGTGGATCAGTGAGACGGGTTTCACGTCAAGATATACAACTCGTTCAAAAC 179
Query 179 CTTATAGAACGATGCCTTCAACTTTACATGAATCAGAAAGAAGTTGTGGATACTTTACTA 238
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 180 CTTATAGAACGATGCCTTCAACTTTACATGAATCAGAAAGAAGTTGTAGATACTTTACTA 239
Query 239 GAGCAGGCTAAAATCGAGCCTGGGTTCACAGAACTAGTTTGGCAGAAGCTTGAAGAAGAG 298
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 240 GAGCAGGCTAAAATCGAGCCTGGCTTCACAGAGCTAGTTTGGCAGAAGCTTGAAGAAGAG 299
Query 299 AATCGGGAGTTTTTCAAAGCTTACTATCTTAGGCTAATGGTTAAACACCAGATAATGGAA 358
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 300 AATCGGGAGTTTTTCAAGGCTTACTATCTTAGGCTAATGGTTAAACACCAGATAATGGAG 359
Query 359 TTCAACAAGTTGCTTGAGCAGCAGGTTCACCACATGCGTCAGATGCATCCAACTGGTGTT 418
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 360 TTCAACAAGTTGCTTGAGCAGCAGGTTCACCACATGCGTCAGATGCATCCAACTGGGGTT 419
Query 419 GCTTCTGTCCAAAACACAAATGGTTCTCATCTTCAATCAATGAATCAGAAACAATTATGC 478
||||| |||||||| || |||||||||||| |||| ||||||||||||||||||||||||
Sbjct 420 GCTTCCGTCCAAAATACTAATGGTTCTCATATTCATTCAATGAATCAGAAACAATTATGC 479
Query 479 TATCCCTCTGAGCACACTGACCAATCTTTGAAGTCTGAAAGTGCACATCATCCAATGGCT 538
|||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||
Sbjct 480 TATCCCTCTGAGCACACTGATCAGTCTTTGAAGTCTGAAAGTGCACATCATCCTATGGCT 539
Query 539 TCTAGTCTGTCTAATGCATTCCTCAATGGCTCTTCCACACTCAATACAAACGTGCCCTCT 598
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 540 TCTAGTCTGTCTAATGCATTCCTAAATGGCTCTTCAACACTCAATACAAACGTGCCCTCT 599
Query 599 TCTATAAACATATCAACCCATGCTAGGAGAGTTGATGCTTCTCCAAATATGCTCTCATCG 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TCTATAAACATATCAACCCATGCTAGGAGAGTTGATGCTTCTCCAAATATGCTCTCATCG 659
Query 659 CAGACCACAAACATGCCTATGATGCAAGGAATGAATGGAGGAATGATCAAGTCTGAGACT 718
|| | | |||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 660 CA--C-A------TGCCTATGGTGCAAGGAATGAATGGAGGAATGATCAAATCTGAGACT 710
Query 719 GCCTTTACAAACCCTGCTTCATTCATGTATGGTGGCGAACGGAATGCCCTCGAAGGACAT 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 711 GCCTTTACAAACCCTGCTTCATTCATGTATGGTGGCGAACGGAATGCCCTCGAAGGACAT 770
Query 779 TCGGCAGTTGGGGATACTTCGATTCCTAATTTCAGTAACGAGTCCAACAACCAACCCCTC 838
|||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||
Sbjct 771 TCGGCAGTTGGGGATACTTCGATTTCTAATTTCAGTAATGAGTCCAACAACCAACCTCTC 830
Query 839 AGTGATCCGCTTCTTGAAGCAGAAGCTTCTACTTTTGGGTTCTTAGGTCAAATTCCTCGT 898
|||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 831 AGTGATACGCTTCTTGAAGCAGAAACTTCTACTATTGGGTTCTTAGGTCAAATTCCTCGT 890
Query 899 AACTTTAGCCTCTCTGATTTGACTGCTGATTTTTCTCAGAGCTCAGAGATTCTGGAGAGC 958
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 891 AACTTTAGCCTCTCTGATTTGACAGCTGATTTTTCCCAGAGCTCAGAGATTCTGGAGAGC 950
Query 959 TACGATAGATCACCCTTCCTTGTGCCGAATGCTGAAAACTTCCTGGACTCCCGTGACAGA 1018
|||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||
Sbjct 951 TACGATAGATCACCCTTCCTTGTGGCGAATGCCGAAAACTTCCTGGACTCCCGTGAAAGA 1010
Query 1019 GGAGAATATCAAGGAGACAACAAGAGATTGGATACCATATCTGAAGGTTTCAGTTACGAT 1078
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1011 GGAGAATATCAAGGAGACAACAAGAGGTTGGATACCATATCTGAAGGTTTCAGTTACGAT 1070
Query 1079 AACATCGGGAGCGAGTAGTTGGGTATTAGGTTTTGCTTTATCACTAATAACATAGGACAC 1138
||||| || ||||||||||| |||| ||||||||||||||||||| ||||| ||||||||
Sbjct 1071 AACATTGGAAGCGAGTAGTTAGGTAATAGGTTTTGCTTTATCACTCATAACGTAGGACAC 1130
Query 1139 GTTTGTGTACAAAAGATTCAGCATTTGATGGTTTTCCTTTGCAAAGACTACTTGGTGGGG 1198
|||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 1131 GTTTGTGTACAAAAGATTCAGCTTTTGATGGTTTTCCTTTGCAAAGACTATTTGGTGGGG 1190
Query 1199 TGTATAAAAAGGGCTTTCTATTAACATTGTTACTTAAGCTTGAAGTTAGTAATAAGTTTA 1258
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1191 TGTATAAAAAGGGCTTTCCATTAACATTGTTACTTAAGCTTGAAGTTAGTAATAAGTTTA 1250
Query 1259 AGAAGAAGATCATGTAAttttcagtgtgtgattttgtctcttttctcttgtgttttagtt 1318
|||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 1251 AGAAGA---TCATGTAATTTTCAGTGT----------CTCTTTTCTCTTGTGTTTTAGTT 1297
Query 1319 atcttttttacttgttacaattgtta 1344
| || |||||||||||||||||
Sbjct 1298 -T-TT----ACTTGTTACAATTGTTA 1317
> Ahg487187 jgi|Araly1|487187|fgenesh2_kg.6__321__AT5G04090.2
Length=1188
Score = 411 bits (222), Expect = 9e-114
Identities = 315/361 (87%), Gaps = 2/361 (1%)
Strand=Plus/Plus
Query 122 ATGTCGAGTGGAACAGTGAGAAGGGTTTCACGTCAAGATATACAACTGGTTCAAAACCTT 181
||||| ||| ||||||||||||||| || ||| ||||||||||||||||||| || ||
Sbjct 70 ATGTCAAGTTTAACAGTGAGAAGGGTATCGCGTGAAGATATACAACTGGTTCAGAATCTA 129
Query 182 ATAGAACGATGCCTTCAACTTTACATGAATCAGAAAGAAGTTGTGGATACTTTACTAGAG 241
|| ||||||||||| || ||||||||||| ||||||||||||||||| ||| ||||||||
Sbjct 130 ATTGAACGATGCCTCCAGCTTTACATGAACCAGAAAGAAGTTGTGGACACTCTACTAGAG 189
Query 242 CAGGCTAAAATCGAGCCTGGGTTCACAGAACTAGTTTGGCAGAAGCTTGAAGAAGAGAAT 301
|||||||| ||||| ||||| || |||||||||||||||||||||||||||||||||||
Sbjct 190 CAGGCTAAGATCGAACCTGGTTTTACAGAACTAGTTTGGCAGAAGCTTGAAGAAGAGAAC 249
Query 302 CGGGAGTTTTTCAAAGCTTACTATCTTAGGCTAATGGTTAAACACCAGATAATGGAAT-T 360
||||| |||||||| || || ||||| ||||| ||||| || |||||||||||||||| |
Sbjct 250 CGGGAATTTTTCAAGGCATATTATCTGAGGCTCATGGTGAAGCACCAGATAATGGAATAT 309
Query 361 CAACAAGTTGCTTGAGCAGCAGGTTCACCACATGCGTCAGATGCATCCAACTGGTGTTGC 420
|||||| |||||||||||||| | |||||||||| |||||||||||||| | | ||
Sbjct 310 -AACAAGCTGCTTGAGCAGCAGATAAACCACATGCGCCAGATGCATCCAACCAGAGGGGC 368
Query 421 TTCTGTCCAAAACACAAATGGTTCTCATCTTCAATCAATGAATCAGAAACAATTATGCTA 480
|||||||||||||| |||||||||||| ||| |||||||||||| |||||||||||||
Sbjct 369 TTCTGTCCAAAACAGGAATGGTTCTCATGTTCCATCAATGAATCACCAACAATTATGCTA 428
Query 481 T 481
|
Sbjct 429 T 429
Score = 189 bits (102), Expect = 5e-47
Identities = 178/214 (83%), Gaps = 8/214 (4%)
Strand=Plus/Plus
Query 872 TTTGGGTTCTTAGGTCAAATTCCTCGTAACTTTAGCCTCTCTGATTTGACTGCTGATTTT 931
||||| |||||||| ||| | ||||| ||||| |||||||||||| |||| |||||||||
Sbjct 739 TTTGGCTTCTTAGGACAACTACCTCGGAACTTCAGCCTCTCTGATCTGACAGCTGATTTT 798
Query 932 TCTCAGAGCTCAGAGATTCTGGAGAGCTACGATAGATCACCCTTCCT-TGTGCC-GAATG 989
|| |||| |||||||||||||||||||||||||||||||| ||||| | || | || ||
Sbjct 799 TCCCAGAATTCAGAGATTCTGGAGAGCTACGATAGATCACCATTCCTAT-TGGCTGA-TG 856
Query 990 CTGAAAACTTCCTGGACTCCCGTGACAGAGG-AGAATATCAAGGAGACAAC-AAGAGATT 1047
| ||||| ||| ||||||| |||| || || |||| |||||||||| | || |||||
Sbjct 857 CGGAAAATTTCTTGGACTCTAGTGAAAG-GGTAGAACCTCAAGGAGACCGCGAA-AGATT 914
Query 1048 GGATACCATATCTGAAGGTTTCAGTTACGATAAC 1081
|| |||||||||||||| ||||| ||||| |||
Sbjct 915 GGGGACCATATCTGAAGGCTTCAGCTACGAAAAC 948
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52869260060
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5