BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G10260.3
Length=1386
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478354 jgi|Araly1|478354|fgenesh2_kg.3__1055__AT3G10260.1 1199 0.0
> Ahg478354 jgi|Araly1|478354|fgenesh2_kg.3__1055__AT3G10260.1
Length=1003
Score = 1199 bits (649), Expect = 0.0
Identities = 718/752 (95%), Gaps = 2/752 (0%)
Strand=Plus/Plus
Query 445 CAGAATCATGCCTGACAAGAACATCGTAGAGGACGTTATCGGTGATTTGGTGGATAACTT 504
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 176 CAGAATCATGCCTGAGAAGAACATTGTAGAGGACGTTATCGGTGATTTGGTGGATAACTT 235
Query 505 CACGGAGACTGTTCAGAAGAACAAACATGGTTCCTCCTTCTTCGAACAAGAAGATTCCGT 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 236 CACGGAGACTGTTCAGAAGAACAAACATGGTTCCTCCTTCTTCGAACAAGAAGATTCCGT 295
Query 565 CAGTTCTCGTTTCAACCGTTTGTTTGATCGCCAGAAGCCAATTCATCA-TGTCTTAGGCG 623
|||||||||||||||||||||||||| ||| |||||||||||||| || | ||||||| |
Sbjct 296 CAGTTCTCGTTTCAACCGTTTGTTTGGTCGTCAGAAGCCAATTCA-CAATATCTTAGGTG 354
Query 624 GTGGCAAATCTGCTGATGTGTTGTTATGGAGGAACAAGAAGATCTCTGCAAGTGTTTTGA 683
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 GTGGTAAATCTGCTGATGTGTTGTTATGGAGGAACAAGAAGATCTCTGCAAGTGTTTTGA 414
Query 684 TGGGAGCTACCGCAATTTGGGTGCTTTTTGAATGGATCAATTTCCATTTCCTGTCTCTCG 743
|||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 415 TGGGAGCTACTGCAATTTGGGTGCTTTTTGAATGGATCAATTTCCATTTTCTGTCTCTCC 474
Query 744 TTTGCTATGCCCTCTTGCTTGGTATGATTGCACAATTCGTTTGGTCTAACGCCTCTGGAT 803
| ||||| |||||||||||||||||||| || ||||||||||||| ||| ||||| || |
Sbjct 475 TCTGCTACGCCCTCTTGCTTGGTATGATCGCCCAATTCGTTTGGTGTAATGCCTCAGGGT 534
Query 804 TCTTAAACCGCTCACAGTCTAGAGTGCCTCGCCTAGTTCTTCCAAAGGATTTCTTTGCTG 863
|| |||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 535 TCCTAAACCGCTCACAGTCTAGAGTGCCTCGGCTTGTTCTTCCAAAGGATTTCTTTGCTG 594
Query 864 AAGTCGGTGTGGCCGTTGGAAAAGAAGTTAACCGCGGTTTGTTGTTTCTTCAGGACTTGG 923
|||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 595 AAGTAGGTGTGGCCATTGGAAAAGAAGTTAACCGCGGTTTGTTGTTTCTACAGGACTTGG 654
Query 924 CTTGTAAAGGGAATTTGAAACAGTTCCTCATGGCTGTAATCGGACTATGGGTAGCTGCAA 983
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 655 CTTGTAAAGGGAATATGAAACAGTTCCTCATGGCTATAATCGGACTATGGGTAGCCGCAA 714
Query 984 TGGTCGGGAGCTGTTGCAATTTCCTAACTGTTTTGTATATCGGGTTTGTTGGGGCACACA 1043
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 715 TGGTTGGGAGCTGTTGCAATTTCCTAACTGTTTTGTACATCGGGTTTGTTGGGGCACACA 774
Query 1044 CAATGCCGGTTCTGTATGAGAGATACGAAGACGAAGTGGATGGTTTTATGGATTCTATGA 1103
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 775 CAATGCCGGTTCTGTATGAGAGATACGAAGACGAAGTGGATGGTTTTATGGATTCTCTGA 834
Query 1104 TCATGAAGTTTCATAGTCATTACAAGAAGCTTGATACTGGGTTTCTCAGTAGAATCCCAA 1163
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 835 TCATGAAGTTTCATAGTCACTACAAGAAGCTTGATACTGGTTTTCTCAGTAGAATCCCAA 894
Query 1164 GTGGAAAGTTTGGATTAAAGAAGCGTGAGTGA 1195
||||||||||||||||||||||||||||||||
Sbjct 895 GTGGAAAGTTTGGATTAAAGAAGCGTGAGTGA 926
Score = 215 bits (116), Expect = 8e-55
Identities = 148/163 (91%), Gaps = 4/163 (2%)
Strand=Plus/Plus
Query 2 aaaaaaaC-AtttttttGTAATTCAATTATTCGACACAACCAATCCCATCTCTTG-T-TT 58
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||| | ||
Sbjct 1 AAAAAAACAATTTTTTTGTAATTCAATTATTCGACACAACCAATCCCATCGCTTGCTCTT 60
Query 59 CACTTCCGCCCTCCATCTTTCTTCGTGATTGAGAGAATCTTCAACGAAAGAAAGCAACtt 118
||| ||| |||||||||||||||||||||||||||||||||||| || ||| ||| ||||
Sbjct 61 CACGTCCACCCTCCATCTTTCTTCGTGATTGAGAGAATCTTCAAAGAGAGACAGCTACTT 120
Query 119 tttttGG-GTGAAATTCACAGAACAACCAAGGTTTttcttctt 160
||||| | |||||||||||| |||||||||| || ||||||||
Sbjct 121 TTTTTTGTGTGAAATTCACAAAACAACCAAGCTTCTTCTTCTT 163
Score = 130 bits (70), Expect = 3e-29
Identities = 75/77 (97%), Gaps = 1/77 (1%)
Strand=Plus/Plus
Query 1234 TTGTTAGAACAATATGGATTATGGTTTGCTAAATGAATGTTTTGAGAATATTA-TTCATT 1292
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 927 TTGTTAGAACAATATGGATTATGGTTTGCTAAATGAATGTTTTGAGAATATTCGTTCATT 986
Query 1293 CATGTAGATTTTGTGTA 1309
|||||||||||||||||
Sbjct 987 CATGTAGATTTTGTGTA 1003
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51802733200
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5