BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G10290.1
Length=1200
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928717 jgi|Araly1|928717|scaffold_301174.1 1561 0.0
Ahg487196 jgi|Araly1|487196|fgenesh2_kg.6__330__AT5G04160.1 1085 0.0
> Ahg928717 jgi|Araly1|928717|scaffold_301174.1
Length=968
Score = 1561 bits (845), Expect = 0.0
Identities = 940/983 (96%), Gaps = 18/983 (2%)
Strand=Plus/Plus
Query 134 ACCCAGATCAGAAATCC-GACATGTCGTCTTCTTCATCTTCTCCGAAGAAACAAACCCTC 192
|||||||||||||| || || ||||||||||||||||||||| | |||||
Sbjct 1 ACCCAGATCAGAAA-CCAGATATGTCGTCTTCTTCATCTTCT---------C---CCCTC 47
Query 193 TTCATATCATCCTTAATCATTCTCTGGTACACCTCCAACATCGGTGTTCTTCTCCTCAAC 252
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 48 TTCATATCATCCTTAATCATCCTCTGGTACACCTCCAACATCGGTGTTCTTCTCCTCAAC 107
Query 253 AAGTTCCTCCTCTCCAATTACGGATTCAAATTCCCTATTTTCCTCACAATGTGTCACATG 312
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 108 AAGTTCCTCCTCTCCAATTACGGATTCAAATTCCCCATTTTCCTCACAATGTGTCACATT 167
Query 313 TCCGCTTGCGCTATCCTCAGCTACGTCTCCATCGTCTTCCTCAAGCTCGTCCCTCTCCAA 372
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 168 TCCGCTTGCGCTATCCTCAGCTACGTCTCCATCGTCTTCCTCAAACTCGTCCCTCTCCAA 227
Query 373 TACCTCAAATCTCGTTCTCAGTTTCTCAAGGTTGCGACTCTCAGCATTGTCTTTTGTGCC 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 228 TACCTCAAATCTCGTTCTCAGTTTCTCAAGGTTGCGACTCTCAGCATTGTCTTTTGTGCC 287
Query 433 TCTGTCGTCGGTGGAAACATCTCCCTTCGTTATCTCCCTGTCTCCTTTAATCAAGCCGTT 492
|| || |||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 288 TCCGTTGTCGGTGGTAACATCTCCCTTCGTTATCTCCCTGTCTCGTTTAATCAAGCCGTT 347
Query 493 GGTGCTACGACGCCGTTTTTCACTGCACTCTTCGCTTATATCATGACCTTT-AAGAGAGA 551
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 348 GGTGCTACGACGCCGTTTTTCACTGCACTCTTCGCTTATATCATGACCTTTAAAG-GAGA 406
Query 552 AGCTTGGGTCACTTATGGCGCTCTCGTCCCCGTTGTTACCGGTGTCGTTATCGCCAGTGG 611
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 407 AGCTTGGGTCACTTATGGTGCTCTCGTCCCCGTTGTTACCGGTGTCGTTATCGCCAGTGG 466
Query 612 GGGTGAACCAGGTTTTCACTGGTTTGGATTCATTATGTGCATTAGTGCTACTGCAGCAAG 671
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 467 GGGTGAACCAGGTTTTCACTGGTTTGGATTCATTATGTGTATTAGTGCTACTGCAGCAAG 526
Query 672 AGCTTTTAAATCTGTTCTTCAAGGCATCTTACTTTCTTCCGAGGGAGAAAGGTTGAATTC 731
||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||
Sbjct 527 AGCTTTTAAATCTGTTCTTCAAGACATCTTACTTTCTTCCGAGGGAGAAAAGCTGAATTC 586
Query 732 GATGAATTTGATGCTGTACATGTCTCCAATAGCCGTCATTGCTCTTCTGCCTGTCACAAT 791
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 587 GATGAATTTGATGCTGTACATGTCTCCAATAGCCGTCATGGCTCTTCTGCCCGTCACAAT 646
Query 792 TTTTATGGAGCCGGACGTGATGAGTGTGACACTAACACTCGGAAGACAACATAAGTACAT 851
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 647 TTTTATGGAGCCGGATGTGATGAGTGTGACACTAACACTCGGAAGACAACATAAGTACAT 706
Query 852 GTA-TATACTTCTGCTGGTTAACTCTGTAATGGCTTATTCAGCCAACTTGTTAAACTTTC 910
|| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 707 GTGGT-TACTTCTGCTGGTTAACTCTGTAATGGCTTATTCAGCCAACTTGTTAAACTTTC 765
Query 911 TGGTTACCAAGCACACAAGCGCACTTACCCTGCAGGTCCTTGGAAATGCTAAAGGAGCGG 970
| || ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 766 TTGTAACCAAGCACACAAGCGCGCTTACCCTCCAGGTCCTTGGAAATGCTAAAGGAGCGG 825
Query 971 TTGCAGTTGTGATATCGATCCTGCTTTTCCGAAACCCGGTAACGGTGATGGGAATTGGCG 1030
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 826 TTGCAGTTGTGATCTCGATCCTGCTTTTCCGAAACCCGGTAACGGTGATGGGAATTGGCG 885
Query 1031 GGTACAGTATAACCGTTCTCGGGGTGGTTGCTTATGGAGAGACTAAACGCAGGTTTAGAT 1090
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 886 GGTACAGTATAACCGTTCTCGGGGTTGTTGCTTATGGAGAGACTAAACGCAGGTTTAGAT 945
Query 1091 GAAGCTCAAAGACTGATATTTTC 1113
|||||||||||||||| ||||||
Sbjct 946 GAAGCTCAAAGACTGAGATTTTC 968
> Ahg487196 jgi|Araly1|487196|fgenesh2_kg.6__330__AT5G04160.1
Length=1308
Score = 1085 bits (587), Expect = 0.0
Identities = 854/981 (87%), Gaps = 26/981 (3%)
Strand=Plus/Plus
Query 123 GAACAAGAAGAACCCAGATCAGAAA-TC-CGAC-ATGTCGTCTTCTTCATCTTCTCCGAA 179
||| ||||||||||||||||||||| | | || |||||||| |||||| ||
Sbjct 92 GAAGAAGAAGAACCCAGATCAGAAACACACAACAATGTCGTCGTCTTCA---------AA 142
Query 180 GAAACAAACCCTCTTCATATC-ATC-CTTAATCATTCTC-TGGTACACCTCCAACATCGG 236
||||||||| | |||||||| | | | |||||| |||| |||||| | || ||||||||
Sbjct 143 GAAACAAACTTTATTCATATCGA-CAC-TAATCA-TCTCATGGTACTCTTCAAACATCGG 199
Query 237 TGTTCTTCTCCTCAACAAGTTCCTCCTCTCCAATTACGGATTCAAATTCCCTATTTTCCT 296
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 200 TGTTCTTCTCCTCAACAAGTTCCTCCTCTCCAATTACGGATTCAAATTCCCCATTTTCCT 259
Query 297 CACAATGTGTCACATGTCCGCTTGCGCTATCCTCAGCTACGTCTCCATCGTCTTCCTCAA 356
|||||||||||||||||||||||| || ||||| |||||| |||||||||||||||||||
Sbjct 260 CACAATGTGTCACATGTCCGCTTGTGCAATCCTTAGCTACATCTCCATCGTCTTCCTCAA 319
Query 357 GCTCGTCCCTCTCCAATACCTCAAATCTCGTTCTCAGTTTCTCAAGGTTGCGACTCTCAG 416
||| || ||||||||| | |||||||||||||| || |||||||||||||| ||||||||
Sbjct 320 GCTTGTTCCTCTCCAACATCTCAAATCTCGTTCCCAATTTCTCAAGGTTGCTACTCTCAG 379
Query 417 CATTGTCTTTTGTGCCTCTGTCGTCGGTGGAAACATCTCCCTTCGTTATCT-CCCTGTCT 475
||| ||||||||||| || ||||||||||| |||||||| |||||||| || ||| ||||
Sbjct 380 CATCGTCTTTTGTGCTTCCGTCGTCGGTGGTAACATCTCGCTTCGTTACCTTCCC-GTCT 438
Query 476 CCTTT-AATCAAGCCGTTGGTGCTACGACGCCGTTTTTCACTGCACTCTTCGCTTATATC 534
| ||| |||||||| || ||||||||||||||||||||||| || || ||||||||| |
Sbjct 439 C-TTTCAATCAAGCTGTCGGTGCTACGACGCCGTTTTTCACCGCTCTGTTCGCTTATCTT 497
Query 535 ATGACCTTTAAGAGAGAAGCTTGGGTCACTTATGGCGCTCTCGTCCCCGTTGTTACCGGT 594
|||||| ||||||||||||||||||| |||||||| ||||||||||| || ||| |||||
Sbjct 498 ATGACCCTTAAGAGAGAAGCTTGGGTTACTTATGGTGCTCTCGTCCCTGTCGTTGCCGGT 557
Query 595 GTCGTTATCGCCAGTGGGGGTGAACCAGGTTTTCACTGGTTTGGATTCATTATGTGCATT 654
||||| ||||||||||||||||| ||||| |||||||||||||| ||||| |||||||||
Sbjct 558 GTCGTCATCGCCAGTGGGGGTGAGCCAGGATTTCACTGGTTTGGGTTCATAATGTGCATT 617
Query 655 AGTGCTACTGCAGCAAGAGCTTTTAAATCTGTTCTTCAAGGCATCTTACTTTCTTCCGAG 714
|||||||| || || ||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 618 AGTGCTACGGCTGCTAGAGCCTTTAAATCTGTTCTTCAAGGCATCTTACTTTCTTCAGAG 677
Query 715 GGAGAAAGGTTGAATTCGATGAATTTGATGCTGTACATGTCTCCAATAGCCGTCATTGCT 774
|| |||| ||||| || |||||||||||| |||| |||||||| ||||| |||||||||
Sbjct 678 GGGGAAAAATTGAACTCAATGAATTTGATGTTGTATATGTCTCCGATAGCTGTCATTGCT 737
Query 775 CTTCTGCCTGTCACAATTTTTATGGAGCCGGACGTGATGAGTGTGACACTA-ACACTCGG 833
||||| || ||||| | |||||||| || |||||||| |||||||| || || || |
Sbjct 738 CTTCTTCCCGTCACGCTATTTATGGAACCAGACGTGATCAGTGTGAC-CTTGACGCTAGC 796
Query 834 AAGACAACATAAGTACATGTATATACTTCTGCTGGTTAACTCTGTAATGGCTTATTCAGC 893
|| ||||||| |||| |||| |||||||| ||||||||||| |||||||||||||||||
Sbjct 797 AAAACAACATCAGTATATGTGGATACTTCTTCTGGTTAACTCGGTAATGGCTTATTCAGC 856
Query 894 CAACTTGTTAAACTTTCTGGTTACCAAGCACACAAGCGCACTTACCCTGCAGGTCCTTGG 953
||| ||||| || |||||||||||||| ||||||||||| || ||||| ||||| |||||
Sbjct 857 CAATTTGTTGAATTTTCTGGTTACCAAACACACAAGCGCCCTCACCCTCCAGGTTCTTGG 916
Query 954 AAATGCTAAAGGAGCGGTTGCAGTTGTGATATCGATCCTGCT-TTTCCGAAACCCGGTAA 1012
||||||||||||||| |||||||| ||||| |||||| || | |||| |||||||||| |
Sbjct 917 AAATGCTAAAGGAGCAGTTGCAGTGGTGATTTCGATCTTGATCTTTC-GAAACCCGGTTA 975
Query 1013 CGGTGATGGGAATTGGCGGGTACAGTATAACCGTTCTCGGGGTGGTTGCTTATGGAGAGA 1072
|||| |||||||||||||||||| |||||||| || ||||||||||||||||||||||
Sbjct 976 CGGTTATGGGAATTGGCGGGTACTCCATAACCGTCCTTGGGGTGGTTGCTTATGGAGAGA 1035
Query 1073 CTAAACGCAGGTTTAGATGAA 1093
| |||||||| ||||||||||
Sbjct 1036 CAAAACGCAGATTTAGATGAA 1056
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44794427475
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5