BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G10300.3
Length=1264
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928719 jgi|Araly1|928719|scaffold_301176.1 1037 0.0
Ahg939814 jgi|Araly1|939814|scaffold_600358.1 619 1e-176
> Ahg928719 jgi|Araly1|928719|scaffold_301176.1
Length=959
Score = 1037 bits (561), Expect = 0.0
Identities = 607/629 (97%), Gaps = 3/629 (0%)
Strand=Plus/Plus
Query 525 GGACATGGAGGAGGTTACGGAG---CTCCTCCTCCGCAAGCTTCTTATGGAAGTCCGTTT 581
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 331 GGACATGGAGGAGGTTACGGGGCTCCTCCTCCTCCGCAAGCTTCTTATGGAAGTCCGTTT 390
Query 582 GCGTCTCTGGTTCCGTCGGCGTTTCCTCCCGGAACAGATCCGAACATTGTGGCTTGTTTC 641
||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 391 GCGTCTCTGGTTCCGTCGGCGTTTCCTCCCGGAACAGATCCGAGCATCGTGGCTTGTTTC 450
Query 642 CAAGCTGCGGATCGGGACAATAGTGGATTCATCGATGATAAGGAGCTTCAAGGAGCTCTA 701
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 451 CAAGCTGCGGATCGGGACAATAGTGGATTCATCGATGATAAGGAGCTTCAGGGAGCTCTC 510
Query 702 TCTTCGTATAATCAGAGCTTCAGCATAAGAACTGTTCATCTCCTTATGTATCTATTCACC 761
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 511 TCTTCGTATAATCAGAGCTTCAGCATAAGAACTGTTCATCTTCTTATGTATCTCTTCACC 570
Query 762 AACAGCAATGTCAGGAAGATTGGACCAAAAGAGTTTACTTCACTTTTCTTTAGTCTTCAG 821
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 571 AACAGCAATGTCAGGAAGATTGGACCAAAAGAGTTTACTTCTCTTTTCTTTAGTCTTCAG 630
Query 822 AATTGGAGGTCTATCTTTGAGAGGTTTGATAAGGACAGAAGCGGTAGAATAGATACAAAC 881
| |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 631 AGTTGGAGGTCTATCTTTGAAAGGTTTGATAAGGACAGAAGTGGTAGAATAGATACAAAC 690
Query 882 GAGCTGAGAGATGCACTCATGAGCCTTGGGTTTTCTGTTTCTCCTGTGATTTTGGATCTG 941
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 691 GAGCTGAGAGATGCACTCATGAGCCTTGGGTTTTCAGTGTCTCCTGTGATTTTGGATCTG 750
Query 942 CTGGTTTCAAAGTTTGACAAAAGCGGAGGCAGGAACAGGGCTATCGAATATGACAATTTC 1001
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 751 CTCGTTTCAAAGTTTGACAAAAGCGGTGGCAGGAACAGGGCTATCGAATATGACAATTTC 810
Query 1002 ATCGAGTGTTGTTTGACTGTAAAGGGGCTCACCGAGAAGTTCAAGGAGAAGGATACGGCG 1061
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 811 ATCGAGTGTTGTTTGACTGTAAAGGGGCTGACCGAGAAGTTCAAGGAGAAGGATACGGCG 870
Query 1062 TTATCAGGCTCAGCTATTTTCAATTACGAGAACTTCATGCTCACTGTTTTACCATTCCTC 1121
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 871 TTATCAGGCTCAGCTACTTTCAATTACGAGAACTTCATGCTCACTGTTTTACCATTCCTC 930
Query 1122 GTCGCTTGAGTGATTGttttttttttttt 1150
|||||||||||||||||||| |||| |||
Sbjct 931 GTCGCTTGAGTGATTGTTTTCTTTTCTTT 959
Score = 477 bits (258), Expect = 8e-134
Identities = 300/320 (94%), Gaps = 3/320 (1%)
Strand=Plus/Plus
Query 107 tcttcttcttctcACCATGTCTGGTTATCCTCCATCAAGCCAAGGTTACGGTTACGGCGG 166
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 6 TCTTCTTCTTCTCACCATGTCTGGTTATCCTCCATCGAGCCAAGGTTACGGTTACGGCGG 65
Query 167 TAATCCACCACCTCCTCAGCCACCGTACGGATCAACCGGCAATAACCCTCCTCCGTACGG 226
|||||||||||| ||||||||||||||||||||| ||||||| || ||||||||||||||
Sbjct 66 TAATCCACCACCGCCTCAGCCACCGTACGGATCATCCGGCAACAATCCTCCTCCGTACGG 125
Query 227 ATCATCCGGCAGCAATCCTCCTCCTCCGTACGGATCATCAGCCTCCTCACCGTACGCAGT 286
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 126 ATCATCCGGCAACAA---TCCTCCTCCGTACGGATCATCAGCCTCCTCACCGTACGCTGT 182
Query 287 TCCCTACGGAGCTCAGCCCGCTCCTTACGGTGCACCACCGTCAGCACCGTACGCGTCTCT 346
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 183 TCCCTACGGAGCTCAGCCCGCGCCTTACGGTGCACCACCGTCAGCACCGTACGCGTCTCC 242
Query 347 TCCAGGAGACCATAATAAGCCGCACAAAGAGAAACCTCACGGCGCCTCCTACGGATCTCC 406
|||||||||||||| ||||||||| ||||| |||||| |||||| | | |||||||||||
Sbjct 243 TCCAGGAGACCATACTAAGCCGCAGAAAGAAAAACCTTACGGCGGCGCTTACGGATCTCC 302
Query 407 ATCTCCCGGTGGCTACGGTG 426
|||||||||||| |||||||
Sbjct 303 ATCTCCCGGTGGTTACGGTG 322
> Ahg939814 jgi|Araly1|939814|scaffold_600358.1
Length=1129
Score = 619 bits (335), Expect = 1e-176
Identities = 520/610 (85%), Gaps = 10/610 (2%)
Strand=Plus/Plus
Query 522 TCTGGACATGGAGGAGGTTACGGAGCTCCTCCTCCGCAAGCTTCTTATGGAAGTCCGTTT 581
||||| || || || || ||||||| | ||||||||||||||||||||||||||| |||
Sbjct 501 TCTGGTCAGGGCGGCGGATACGGAGGTTATCCTCCGCAAGCTTCTTATGGAAGTCCTTTT 560
Query 582 GCGTCTCTGGTTCCGTC-GGCGTTTCCTCCCGGAACAGATCCGAACATTGTGGCTTG-TT 639
|| |||||| ||||||| || ||| |||| ||||| |||||||| || |||||||| ||
Sbjct 561 GCTTCTCTGATTCCGTCAGG-TTTTGCTCCGGGAACGGATCCGAATATAGTGGCTTGCTT 619
Query 640 TCCAAGCTGCGGATCGGGACAATAGTGGATTCATCGATGATAAGGAGCTTCAAGGAGCTC 699
| || ||||| |||| || |||||| || || |||||||||||||||||||||||||
Sbjct 620 T-CAGGCTGCAGATCAAGATGGTAGTGGCTTTATTGATGATAAGGAGCTTCAAGGAGCTC 678
Query 700 TATCTTCGTAT-AATCAGAGCTTCAGCATAAGAACTGTTCATCTCCTTATGTATCTATTC 758
| ||||| ||| || ||||| ||||| || |||||||||||||| ||||||||||| |||
Sbjct 679 TCTCTTCTTATCAA-CAGAGATTCAGTATGAGAACTGTTCATCTTCTTATGTATCTGTTC 737
Query 759 ACCAACAGCAATGTCAGGAAGATTGGACCAAAAGAGTTTACTTCACTTTTCTTTAGTCTT 818
||||| ||||||| || ||| || ||||| || ||||||||| ||||||||| ||||||
Sbjct 738 ACCAATAGCAATGCCATGAAAATCGGACCTAAGGAGTTTACTGCACTTTTCTACAGTCTT 797
Query 819 CAGAATTGGAGGTCTATCTTTGAGAGGTTTGATAAGGACAGAAGCGGTAGAATAGATACA 878
||||| |||||||| || |||||||||| |||||||||||| || || |||||||||
Sbjct 798 CAGAACTGGAGGTCCATTTTTGAGAGGTCTGATAAGGACAGGAGTGGCAGAATAGATGTG 857
Query 879 AACGAGCTGAGAGATGCACTCATGAGCCTTGGGTTTTCTGTTTCTCCTGTGATTTTGGAT 938
|| |||||||||||||| || |||||||||||||||| |||||||||||||||||||||
Sbjct 858 AATGAGCTGAGAGATGCGCTTTTGAGCCTTGGGTTTTCGGTTTCTCCTGTGATTTTGGAT 917
Query 939 CTGCTGGTTTCAAAGTTTGACAAAAGCGGAGGCAGGAACAGGGCTATCGAATATGACAAT 998
||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 918 CTGCTGGTTTCCAAGTTTGACAAAAGCGGAGGCAAGAACAGGGCCATCGAATATGACAAT 977
Query 999 TTCATCGAGTGTTGTTTGACTGTAAAGGGGCTCACCGAGAAGTTCAAGGAGAAGGATACG 1058
||||| ||||| ||| | ||||| ||||| || || |||||||||||||||||||| ||
Sbjct 978 TTCATTGAGTGCTGTCTCACTGTTAAGGGCCTGACAGAGAAGTTCAAGGAGAAGGACACA 1037
Query 1059 GCGTTA-TCAGGCTCAGCTATTTTCAATTACGAGAA-CTTCATGCTCACTGTTTTACCAT 1116
|||| | ||||||||||||| |||||| ||||| || |||||||||||| || | || |
Sbjct 1038 GCGT-ACTCAGGCTCAGCTACTTTCAACTACGA-AAGCTTCATGCTCACCGTCCTCCCCT 1095
Query 1117 TCCTCGTCGC 1126
||||| ||||
Sbjct 1096 TCCTCATCGC 1105
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47234294163
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5