BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G10310.1
Length=2899
Score E
Sequences producing significant alignments: (Bits) Value
Ahg903909 jgi|Araly1|903909|Al_scaffold_0003_1037 2990 0.0
Ahg937131 jgi|Araly1|937131|scaffold_501322.1 220 4e-56
> Ahg903909 jgi|Araly1|903909|Al_scaffold_0003_1037
Length=2694
Score = 2990 bits (1619), Expect = 0.0
Identities = 1757/1825 (96%), Gaps = 3/1825 (0%)
Strand=Plus/Plus
Query 1037 GTTCTCAAGAACTTGTTTATAAAAACGAAGCAGGATTTTAAGGAATTTCAGGTTTATTTG 1096
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 829 GTTCTCAAGACCTTGTTTATAAAAACGAAGCAGGATTTTAAGGAATTTCAGGTTCATTTG 888
Query 1097 CAAAGAGATTTGATGGAACTAGGGAATCAGATGCAAGAGATGTCATCAGCAGCTCAGGGA 1156
||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||
Sbjct 889 CAAAGAGATTTGATGGAGCTCGGGAATCAGATGCAAGAGATGTCATCAGCAGCTCAAGGA 948
Query 1157 TATTACAAAGTGGTGGAAGAGAATCGAAAATTATATAACATGGTGCAAGATCTTAAAGGA 1216
||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 949 TATTACAAAGTGGTGGAAGAGAACCGAAAACTATATAACATGGTGCAAGATCTTAAAGGA 1008
Query 1217 AATATAAGAGTGTACTGCAGAGTTAGACCGATCTTCAATAGTGAAATGGACGGAGTTATA 1276
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 1009 AATATAAGAGTGTACTGCAGAGTTAGACCGATCTTCAATAGTGAAATGAACGGAGTAATA 1068
Query 1277 GATTATATAGGAAAAGATGGCTCTTTATTCGTTTTGGATCCATCGAAGCCTTATAAAGAT 1336
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1069 GATTATATAGGAAAAGATGGCTCTTTATTTGTTTTGGATCCATCGAAGCCTTATAAAGAT 1128
Query 1337 GCCAGAAAAACGTTTCAATTTAATCAAGTATTTGGTCCAACAGCAACTCAAGATGATGTA 1396
|| |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1129 GCAAGAAAAACTTTTCAATTTAATCAAGTATTTGGTCCAACAGCAAGTCAAGATGATGTA 1188
Query 1397 TTCAGAGAAACACAACCATTAATCAGATCAGTGATGGATGGTTACAATGTCTGCATTTTC 1456
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1189 TTCAGAGAAACGCAACCATTAATCAGATCAGTGATGGATGGTTACAATGTCTGCATTTTC 1248
Query 1457 GCTTATGGTCAAACGGGATCAGGGAAGACATACACAATGAGTGGTCCTCCAGGCAGATCA 1516
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1249 GCTTATGGTCAAACTGGATCAGGGAAGACATACACAATGAGTGGTCCTCCAGGTAGATCA 1308
Query 1517 GCTACTGAAATGGGAATAAACTATCTAGCTCTCAGTGATCTCTTTCTGATATATATACGA 1576
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 1309 GCTACTGAAATGGGAATAAACTATCTTGCTCTCAGTGATCTCTTTCTGATATATATTCGA 1368
Query 1577 ACTTGTTCCAGCGATGATGATGGGTTGAGTCTTCCAGATGCTACAATGCATTCTGTGAAT 1636
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1369 ACTTGTTCCAGCGAGGATGATGGCTTGAGTCTTCCAGATGCTACAATGCATTCTGTGAAT 1428
Query 1637 TCTACCAAGGATGTCCTTCAGCTGATGGAGGCTGGTGAAGTGAATCGTGCAGTTAGTTCC 1696
|| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 1429 TCCACCAAGGATGTCCTTCAGCTGATGGAGGCTGGAGAAGTGAATCGTGCAGTCAGTTCC 1488
Query 1697 ACGTCCATGAATAATCGAAGTAGTCGGTCACACAGTATTTTTATGGTGCACGTACGTGGG 1756
|| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1489 ACATCCATGAACAATCGAAGTAGTCGGTCTCACAGTATTTTTATGGTGCACGTACGTGGG 1548
Query 1757 AAAGATACATCTGGGGGAACCCTTCGAAGTTGCTTGCATCTGGTGGATCTTGCAGGGAGC 1816
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1549 AAAGACACATCTGGGGGAACCCTCCGAAGTTGCTTGCATCTGGTGGATCTTGCAGGGAGC 1608
Query 1817 GAGAGAGTAGATAAATCAGAGGTTACTGGAGACAGACTCAAAGAAGCACAATATATCAAC 1876
|||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||
Sbjct 1609 GAGAGAGTAGATAAATCAGAGGTTACTGGAGACAGACTTAAGGAAGCACAGTATATCAAC 1668
Query 1877 AAATCTCTTTCTTGTCTCGGAGATGTCATTTCTGCATTGGCTCAGAAGAATTCTCACATC 1936
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1669 AAATCTCTTTCTTGTCTCGGAGATGTGATTTCTGCATTGGCTCAGAAGAATTCTCACATC 1728
Query 1937 CCATACCGAAACAGCAAGTTGACTCTTCTACTTCAAGACTCATTAGGAGGACAAGCCAAA 1996
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1729 CCCTACCGAAACAGCAAGTTGACTCTTCTACTTCAAGACTCATTAGGAGGACAAGCCAAA 1788
Query 1997 ACATTAATGTTTGCTCATTTGAGTCCTGAGGAAGACTCCTTTGGGGAAACAATCAGTACT 2056
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1789 ACATTAATGTTTGCTCATTTGAGTCCTGAGGAAGACTCCTTTGGGGAAACAATCAGTACT 1848
Query 2057 TTGAAATTCGCACAAAGAGTTTCAACAGTCGAACTTGGAGCTGCTCGTGCACACAAAGAG 2116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1849 TTGAAATTCGCACAAAGAGTTTCAACAGTCGAACTTGGAGCTGCTCGTGCACACAAAGAG 1908
Query 2117 ACTAGAGAGGTTATGCATCTCAAGGAGCAGATTGAAAACCTGAAGAGGGCTTTGGGTACC 2176
||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 1909 ACTAGAGAGGTTATGCATCTCAAGGAGCAGATTGAAAACCTCAAGAAGGCTTTGGGTACC 1968
Query 2177 GAAGAATGGAATAATGTTTCCAAC-G-G-ATCAAAGGAGATAAAATCACCTTTCAGCAGG 2233
||||||| |||||||||| |||| | | | |||||||||||||||| |||| |||||||
Sbjct 1969 GAAGAATATAATAATGTTTTCAACAGTGGAGCAAAGGAGATAAAATCTCCTTACAGCAGG 2028
Query 2234 CCAATCGCAACAACAGAGAGAACTCCTCCACGTCTCAGAAGGTTAAGCATCGAAAACTGT 2293
||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2029 CCATTTGCAACAACAGAGAGAACTCCTCCACGTCTCAGAAGATTAAGCATCGAAAACTGT 2088
Query 2294 AGCAGCACAAAGGCAAACCTTGAAGACAGGAGAGGTATTAAATCACCTTTAGCCTCCCGT 2353
|||| |||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 2089 AGCAACACAAAGGCAAACCTTGAAGACAGGAAAGGTGTTAAATCACCTTTAGCCTCCCGT 2148
Query 2354 CGTGCACAAATATTGAGTCTGGAGGGTCCAATGTCCTGTAAAAACGAAGAAAACGGTAAA 2413
|||||||||| ||||||| |||||||||||| |||||||||||||||||||||| |||||
Sbjct 2149 CGTGCACAAAGATTGAGTTTGGAGGGTCCAAAGTCCTGTAAAAACGAAGAAAACAGTAAA 2208
Query 2414 GGAGATCCCACCATGGAAGTGCACCAGCTCAAAAATCCACGGAGTCCTCTAAGCTCTTAT 2473
|||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 2209 GGAGATCCCACCATGGAAGTGCACCAGCTCAAGAATCCACGGAGTCCTTTAAGCTCTTAT 2268
Query 2474 CAAAACCGAGCCGTGAAAGTAGATGGCAGAACAAGCATTCCTCAACTCCAGCTATTACAA 2533
||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 2269 CAAAACCGAGCAGTGAAAGTAGATGGCAGAACAAGCATTCCTCAACTTCAGCTATTGCAA 2328
Query 2534 ACACCAGTTAAAGGAGCTTCCAGAAACGACATACAGATGATTTCTGTTGATTCTAAGACA 2593
|||||||||||||| |||||||||||||||||||| ||||||||||| ||||||| ||||
Sbjct 2329 ACACCAGTTAAAGGTGCTTCCAGAAACGACATACAAATGATTTCTGTGGATTCTAGGACA 2388
Query 2594 AATGGAAAAGGTTCACATATACGGAAGTCCCTGAGGACAATTGGAAAGCTGATCAATGGT 2653
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2389 AATGGAAAAGGTTCACAAATACGGAAGTCCCTGAGGACAATTGGAAAGCTGATCAATGGT 2448
Query 2654 TCAGAGAAGAGGAAAGAGAACATTCCTGCAGATCCACGGTCACCACTTGGAGTTGCTAAT 2713
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 2449 TCAGAGAAGAGGAAAGATAACATTCCTGCAGATCCACGGTCACCACTTGGAGTTGCAAAT 2508
Query 2714 AATTTTAGTCATATAAAGTCCCCGGACACAAGCAACGCTAAGACTATGCGACGGCAGTCA 2773
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2509 AATTTCAGTCATATAAAGTCCCCGGACACAAGCAACGCTAAGACTATGCGACGGCAGTCA 2568
Query 2774 CTCACAGGTGTAATGCCACCAGGGCAAGAAAGATCACGTAGATCCTCAATAGGAGGAAAA 2833
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2569 CTCACAGGTGTAATGCCACCAGGGCAAGAAAGATCACGTCGATCCTCAATAGGAGGAAAA 2628
Query 2834 CCAATTGAGAATGGTAAGAAAGATC 2858
|||||||||||||||||||||||||
Sbjct 2629 CCAATTGAGAATGGTAAGAAAGATC 2653
Score = 1332 bits (721), Expect = 0.0
Identities = 796/832 (96%), Gaps = 5/832 (1%)
Strand=Plus/Plus
Query 131 ATGACAACTGGGTTGCACGAATTTAATCTGGCTTCTAGAAGAGCCGAAGAAGCAGCGGCG 190
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1 ATGACAACTGGGTTGCACGAATTCAATCTGGCTTCAAGAAGAGCCGAAGAAGCAGCGGCG 60
Query 191 AGGAGGTTTCAAGCCGTGCAATGGCTTAAATCTGTAGTGGGTCAACTGGGTATACCGAAT 250
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 61 AGGAGGTTTCAAGCCGTGCAATGGCTTAAATCTGTAGTGGGTCAACTGGGCATACCGAAT 120
Query 251 CAGCCATCGGAGAAGGAGTTCATTTCTTGCTTGAGAAATGGTATGATACTTTGTAATGCA 310
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 121 CAGCCATCGGAGAAGGAGTTCATTTCTTGCTTGAGAAATGGTATGATTCTTTGTAATGCA 180
Query 311 ATCAACAAGATCCACCCAGGAGCTGTTTCAAAGGTTGTGGAGAACTACTCGTATTTGAAC 370
||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||
Sbjct 181 ATCAACAAGATCCACCCAGGAGCCGTTTCCAAGGTTGTGGAGAACTACTCGTATATGAAC 240
Query 371 GGAGAGTATCAGCTTCCACCGGCTTATCAATATTTCGAGAATGTTCGGAATTTTCTTGTG 430
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GGAGAGTATCAACTTCCACCGGCTTATCAATATTTCGAGAATGTTCGGAATTTTCTTGTG 300
Query 431 GCTTTAGAAACATTGAGGCTTCCTGGATTTGAAGCTTCTGATCTTGAAAAGGATAATCTA 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GCTTTAGAAACATTGAGGCTTCCTGGATTTGAAGCTTCTGATCTTGAAAAGGATAATCTA 360
Query 491 GAGTCTGGATCAGTGACCAAGGTTGTGGATTGCATTTTGGGACTTAAGGCATACCATGAG 550
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 361 GAGTCTGGATCAGTGACCAAGGTTGTGGATTGCATTTTAGGACTTAAGGCTTACCATGAG 420
Query 551 TGCAAGTTACCGAGCAATGGTAATGGGTTATACAAGCACGTCAAAACGCCGACGTTTCAG 610
|||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 421 TGCAAGATAACGAGCAATGGTAATGGGTTATACAAGCACGTCAAAACGCCGACATTTCAG 480
Query 611 CTCTCTGCGACTAAGATTCACCCTACTCTAAGTGCTTCCAAAACGTCTAGGCATTTGGAT 670
|||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||
Sbjct 481 CTCTCTGCGACTAAGATTCAGCCT-CT--AAGTGCTTCCAAAACGTCTAGGCATTTGGAT 537
Query 671 ATGTCCTCAGTCCGTGAGAGAAACGATTGCACTGATGGTGAATCTGATAAACTCAAAGGG 730
||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
Sbjct 538 ATGTCCTCAGTCCGTGATATAAACGATTGCACTGATGGTGAATCTGATAAACTCAAAGAG 597
Query 731 ATAGCCAAGTTGTTTGCCGATCACATTTTCAGTTCCAAGGAAAATATTGATGAGAATCTT 790
||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 598 ATAGCCAAGTTGTTTGCCGATCATATTTTCAATTCCAAGGAAAATATTGATGAGAATCTT 657
Query 791 GTTTCATTAGAGAATGGCAGTGAGAATTCTAGAGCAAACTTCGAGAAAATCCTCTCAAGA 850
|||||||||||||||||| || |||| ||||||||||||||||||||||| ||||||||
Sbjct 658 ATTTCATTAGAGAATGGCACTGGGAATCCTAGAGCAAACTTCGAGAAAATCATCTCAAGA 717
Query 851 TTCCCAGAGCTTCAATCAGTATTCAAGAATTTACTTAGCGAAGGAACTTTGAAACCATCA 910
|||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||| ||
Sbjct 718 TTCCCAGAGCTTCAGTCAGTATTCAAGAATTTACTTAGCGAAGGTACTTTGAGTCCACCA 777
Query 911 GACTTAAAATCCATGCCGT-TGGAGGAGTTACCTGTCCATGAAGAAGACCAA 961
|| |||||||||||||| | |||||||||||| |||||||||||||||||||
Sbjct 778 GAATTAAAATCCATGCC-TCTGGAGGAGTTACTTGTCCATGAAGAAGACCAA 828
> Ahg937131 jgi|Araly1|937131|scaffold_501322.1
Length=553
Score = 220 bits (119), Expect = 4e-56
Identities = 138/147 (94%), Gaps = 2/147 (1%)
Strand=Plus/Plus
Query 2663 AGGAAAGAGAACATTCCTGCAGATCCAC-GGTCACCACTTGGAGTTGCTAATAATTTTAG 2721
|||||||| |||||||||| |||||| | ||||||||||||||||||| |||||||| ||
Sbjct 360 AGGAAAGAAAACATTCCTGAAGATCC-CTGGTCACCACTTGGAGTTGCAAATAATTTCAG 418
Query 2722 TCATATAAAGTCCCCGGACACAAGCAACGCTAAGACTATGCGACGGCAGTCACTCACAGG 2781
||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 419 TCATATAAAGTCCCCTGACACAAGCAACGCTAAGACTATGCGACGGCCGTCACTCACAGG 478
Query 2782 TGTAATGCCACCAGGGCAAGAAAGATC 2808
||||||||||||||| |||||||||||
Sbjct 479 TGTAATGCCACCAGGACAAGAAAGATC 505
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 109433273885
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5