BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G10320.1 Length=1847 Score E Sequences producing significant alignments: (Bits) Value Ahg478362 jgi|Araly1|478362|fgenesh2_kg.3__1063__AT3G10320.1 2536 0.0 > Ahg478362 jgi|Araly1|478362|fgenesh2_kg.3__1063__AT3G10320.1 Length=1829 Score = 2536 bits (1373), Expect = 0.0 Identities = 1661/1792 (93%), Gaps = 51/1792 (3%) Strand=Plus/Plus Query 84 tctctcta-ctctc-tttcctctctagctacttctctcccttacgtctcCAAGGAGATAG 141 |||||||| ||||| | | |||||| || | |||| ||||||||| ||||||||||||| Sbjct 61 TCTCTCTATCTCTCGTCTACTCTCT--CT-CCTCTC-CCCTTACGTATCCAAGGAGATAG 116 Query 142 ATTGACAAATTCTGTTCACAAAG--GAAAA----A--AGTTCCTCTGCATA-----CGTC 188 || ||||||||||||||||||| ||||| | | |||||||||||| |||| Sbjct 117 ATACACAAATTCTGTTCACAAAGAAGAAAAGTTTACTATTTCCTCTGCATACGTCTCGTC 176 Query 189 TCTC--TCTCTATGTTCTTCATTTATATGACTTGAATAACAAGTAAAGGATGAGGCAGAA 246 |||| ||||| ||||||||| |||||||||||||||| |||||||||||||||||||| Sbjct 177 TCTCTTTCTCTGTGTTCTTCACCTATATGACTTGAATAAGAAGTAAAGGATGAGGCAGAA 236 Query 247 TCTGAAAAAAGTAGCACAGATCAAAGTAGACGAATCT-AAGAAGCTATTTCCTTATGTCT 305 ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| Sbjct 237 TCTGAAAAAAGTAGCACAGATCAAAGTAGACGAATCTCCA-AAGCTATTTCCTTATGTCT 295 Query 306 TCCGGGTTAAAACTTCTTGTGGGAATTGCGCTAAGAGATCGAAGCCTAAGCTTATCTATC 365 ||||| |||||| |||||||||||||||||| ||||||||||||||||| ||||| |||| Sbjct 296 TCCGGTTTAAAAATTCTTGTGGGAATTGCGCAAAGAGATCGAAGCCTAAACTTATTTATC 355 Query 366 TTCTTATCTTCTCTCTTATCTCAAGTTGCTTTGTCTTTGCTCCTCAGCTCCTCTGTTTCC 425 ||||| |||||||||||||||||||||||||||||||||||||| | ||||||| ||||| Sbjct 356 TTCTTCTCTTCTCTCTTATCTCAAGTTGCTTTGTCTTTGCTCCTGATCTCCTCTATTTCC 415 Query 426 CTTACCCCTCTGCTCTGTTTCTCATCGATTCTTCAATTAAAGAGATTGAAAATCGGGTTT 485 |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 416 CTTATCCATCTGCTCTGTTTCTCATCGATTCTTCAATTAAAGAGATTGAAAATCGGGTTT 475 Query 486 CCGAAAGCAATATAGAATCACCTAAGACGTCACAAAAAGAAGAGAGCATATCTTGTGACA 545 |||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 476 CCGAAAGCCATATAGAATCACCTAAGACGTCACAAAATGAAGAGAGCATATCTTGTGACA 535 Query 546 GAACCGGCTATCGTTCAGACATCTGTTTCATGAAAGGCGATATCAGAACACACTCTCCTT 605 ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 536 GAACCGGGTATCGTTCAGACATCTGTTTCATGAAAGGAGATATCAGAACACACTCTCCTT 595 Query 606 CCTCCTCCATCT-TTCTCTACACCTCGAATGATCTCACCACCGATCAGGTCTTGCAAGAA 664 | ||||| || | |||||||||||||||||||||| ||||||| | ||||||| |||| Sbjct 596 CTTCCTCTAT-TATTCTCTACACCTCGAATGATCT---CACCGATAATGTCTTGCCAGAA 651 Query 665 AAAATCAAACCATACACCAGAAAATGGGAAACTAGTATAATGGAAACCATCCCTGAGCTC 724 |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| Sbjct 652 AAAATCAAACCATACACCAGAAAATGGGAAACAAGTATAATGGAAACCATCCATGAGCTG 711 Query 725 AAACTTGTGACAAAAGATATGAAGCTTTTTGGCGACAAGCGTAAATGCGAAGTGATCCAT 784 ||||||||||||||||||||||||| |||||| |||| | ||||||| |||||||||||| Sbjct 712 AAACTTGTGACAAAAGATATGAAGCGTTTTGGTGACAGGTGTAAATGTGAAGTGATCCAT 771 Query 785 GAAGTACCGGCCGTGCTATTCTCTACCGGAGGATATACCGGAAACCTCTATCATGAGTTC 844 |||||||| || |||||||||||||||||||| |||||||||||| | |||||||||||| Sbjct 772 GAAGTACCCGCTGTGCTATTCTCTACCGGAGGGTATACCGGAAACTTGTATCATGAGTTC 831 Query 845 AACGACGGGCTTATTCCTTTGTATATAACATCTAAACGTTTCAACAAAAAGGTTGTCTTT 904 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 832 AACGACGGGCTTATTCCTCTGTATATAACATCTAAACGTTTCAACAAAAAGGTTGTCTTT 891 Query 905 GTGATTGCTGAGTATCACAAGTGGTGGGAGATGAAGTATGGAGATGTTCTCTCTCAGCTC 964 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 892 GTGATTGCTGAGTATCACAAGTGGTGGGAGATGAAGTATGGAGATGTTCTCTCTCAGCTC 951 Query 965 TCTGATTACTC-TCTTATCGACTTCAACAAAGACAAGAGAACTCACTGCTTCAAGGAAGC 1023 |||||||| || |||||| || |||| ||||||||||||||||||||| ||||||||||| Sbjct 952 TCTGATTA-TCCTCTTATTGATTTCAGCAAAGACAAGAGAACTCACTGTTTCAAGGAAGC 1010 Query 1024 TATTGTTGGTCTTAGAATCCATGGTGAGTTAACCGTCGATCCTTCTCAGATGCAAGATGA 1083 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1011 CATTGTTGGTCTTAGAATCCATGGTGAGTTAACCGTTGATCCTTCTCAGATGCAAGATGG 1070 Query 1084 TGGAACAACCATCAATGAGTTCAGAAATGTACTTGATCGAGCTTATAGACCACGAATCAA 1143 | |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| Sbjct 1071 TAGAACAACCATCAATGAGTTCAGAAATGTACTTGATCGAGCTTATGGACCCCGAATCAA 1130 Query 1144 CAGACTGGACAGGCTAGAGGAGCAACGATTCCACGCAAGACTAGCACAGAGAAGAAAGGC 1203 ||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||| Sbjct 1131 CAGACTGGACAGGCTAGAGGAGCAACGGTTCCACGCAAGAGTAGCAAAGAGAAGAAAGGC 1190 Query 1204 TAAGAGGCCAAAACTAGCGTTGTTTTCAAGAACCGGGTCTCGAGGGATAACAAACGAGGA 1263 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1191 TCAGAGGCCAAAACTAGCGTTGTTTTCAAGAACCGGGTCTCGAGGGATAACAAACGAGGA 1250 Query 1264 CCTGATGGTGAAAATGGCTCAGAGGATCGGGTTTGACA-TCGAGGTTTTGAGACCTGACA 1322 ||||||||| || ||||||| |||||||||||||| | | ||||||||||||||||||| Sbjct 1251 TCTGATGGTGCAATTGGCTCAAAGGATCGGGTTTGA-AGTTGAGGTTTTGAGACCTGACA 1309 Query 1323 GAACAACGGAACTGGCAAAGATTTACAGAGTG-TTAAACTCAAGCAAAGTCATGGTTGGG 1381 |||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| Sbjct 1310 GAACAACGGAACTGGCAAAGATTTACAGAGTGCTTAA-CTCAAGCAAAGTCATGGTTGGG 1368 Query 1382 GTACATGGAGCAGCCATGACCCATTTTCTGTTCATGAAACCTGGAAGTATCTTTATTCAG 1441 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1369 GTACATGGAGCAGCCATGACCCATTTTCTGTTCATGCAACCTGGAAGTATCTTTATTCAG 1428 Query 1442 ATCATTCCACTGGGAACAGATTGGGCAGCAGAGACATATTATGGAGAACCGGCAAAGAAG 1501 ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1429 ATCATTCCATTGGGGACAGATTGGGCAGCAGAGACATATTATGGAGAACCGGCAAAGAAG 1488 Query 1502 CTCGGTCTAGACTACAATGGTTATAAGATTCTTCCAAGAGAGAGCTCATTGTATGAAAAA 1561 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1489 CTCGGTCTAGACTACATTGGTTATAAGATTCTTCCAAGAGAGAGCTCATTGTATGAAAAA 1548 Query 1562 TATGATAAAGATGATCCAATTCTAAAAGATCCAAACAGCATCACTAAGAAAGGATGGCAA 1621 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1549 TATGATAAAGATGATCCAATTCTAAGAGATCCAAACAGCATCACTAAGAAAGGATGGCAA 1608 Query 1622 TTCACAAAGGGGATATACCTGAACGACCAGAAAGTGAGGTTAGATCTCCATAGATTCAAG 1681 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1609 TTCACAAAGGGGATATACCTGAACGGCCAGAAAGTGAGGTTAGATCTCCATAGATTCAAG 1668 Query 1682 AAGCTTTTGATTGATGCGTATGCAAAATCGATTAGGTGACCTGAAATGAGTTTTGAGAGT 1741 ||| ||||| ||||||||||||||||||||||||| |||||||||||||||| ||| ||| Sbjct 1669 AAGGTTTTGGTTGATGCGTATGCAAAATCGATTAGCTGACCTGAAATGAGTTCTGAAAGT 1728 Query 1742 TCT-TTTTATTGTTGCTGTATAGTCTGCATAAACTACAGAAATTACAGAGTTCTTTTTGT 1800 | | |||| |||||||||||||||||||| |||||||||| | |||||| || Sbjct 1729 TTTATTTTGTTGTTGCTGTATAGTCTGCACAAACTACAGA-------G--TTCTTT--GT 1777 Query 1801 AAAGATTTAAATGAAACC--A---TAAATGAATTCAATGTTTCAGAGACACT 1847 |||||||||||||||||| | ||||||||||||||||| |||||||||| Sbjct 1778 AAAGATTTAAATGAAACCGTAACATAAATGAATTCAATGTTGCAGAGACACT 1829 Score = 89.8 bits (48), Expect = 7e-17 Identities = 62/68 (91%), Gaps = 4/68 (6%) Strand=Plus/Plus Query 1 CTCTCTAAATAAATACTCTGATTTCAAAGCTAAAAC---TTACAACAACACCCACAAAac 57 |||||||||||||||||||||||||||||| | ||| ||||||||||||||| ||||| Sbjct 1 CTCTCTAAATAAATACTCTGATTTCAAAGC-ACAACGCCTTACAACAACACCCAGAAAAC 59 Query 58 ttctctct 65 |||||||| Sbjct 60 TTCTCTCT 67 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 69362336145 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5