BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G10320.1
Length=1847
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478362 jgi|Araly1|478362|fgenesh2_kg.3__1063__AT3G10320.1 2536 0.0
> Ahg478362 jgi|Araly1|478362|fgenesh2_kg.3__1063__AT3G10320.1
Length=1829
Score = 2536 bits (1373), Expect = 0.0
Identities = 1661/1792 (93%), Gaps = 51/1792 (3%)
Strand=Plus/Plus
Query 84 tctctcta-ctctc-tttcctctctagctacttctctcccttacgtctcCAAGGAGATAG 141
|||||||| ||||| | | |||||| || | |||| ||||||||| |||||||||||||
Sbjct 61 TCTCTCTATCTCTCGTCTACTCTCT--CT-CCTCTC-CCCTTACGTATCCAAGGAGATAG 116
Query 142 ATTGACAAATTCTGTTCACAAAG--GAAAA----A--AGTTCCTCTGCATA-----CGTC 188
|| ||||||||||||||||||| ||||| | | |||||||||||| ||||
Sbjct 117 ATACACAAATTCTGTTCACAAAGAAGAAAAGTTTACTATTTCCTCTGCATACGTCTCGTC 176
Query 189 TCTC--TCTCTATGTTCTTCATTTATATGACTTGAATAACAAGTAAAGGATGAGGCAGAA 246
|||| ||||| ||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 177 TCTCTTTCTCTGTGTTCTTCACCTATATGACTTGAATAAGAAGTAAAGGATGAGGCAGAA 236
Query 247 TCTGAAAAAAGTAGCACAGATCAAAGTAGACGAATCT-AAGAAGCTATTTCCTTATGTCT 305
||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 237 TCTGAAAAAAGTAGCACAGATCAAAGTAGACGAATCTCCA-AAGCTATTTCCTTATGTCT 295
Query 306 TCCGGGTTAAAACTTCTTGTGGGAATTGCGCTAAGAGATCGAAGCCTAAGCTTATCTATC 365
||||| |||||| |||||||||||||||||| ||||||||||||||||| ||||| ||||
Sbjct 296 TCCGGTTTAAAAATTCTTGTGGGAATTGCGCAAAGAGATCGAAGCCTAAACTTATTTATC 355
Query 366 TTCTTATCTTCTCTCTTATCTCAAGTTGCTTTGTCTTTGCTCCTCAGCTCCTCTGTTTCC 425
||||| |||||||||||||||||||||||||||||||||||||| | ||||||| |||||
Sbjct 356 TTCTTCTCTTCTCTCTTATCTCAAGTTGCTTTGTCTTTGCTCCTGATCTCCTCTATTTCC 415
Query 426 CTTACCCCTCTGCTCTGTTTCTCATCGATTCTTCAATTAAAGAGATTGAAAATCGGGTTT 485
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 CTTATCCATCTGCTCTGTTTCTCATCGATTCTTCAATTAAAGAGATTGAAAATCGGGTTT 475
Query 486 CCGAAAGCAATATAGAATCACCTAAGACGTCACAAAAAGAAGAGAGCATATCTTGTGACA 545
|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 476 CCGAAAGCCATATAGAATCACCTAAGACGTCACAAAATGAAGAGAGCATATCTTGTGACA 535
Query 546 GAACCGGCTATCGTTCAGACATCTGTTTCATGAAAGGCGATATCAGAACACACTCTCCTT 605
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 536 GAACCGGGTATCGTTCAGACATCTGTTTCATGAAAGGAGATATCAGAACACACTCTCCTT 595
Query 606 CCTCCTCCATCT-TTCTCTACACCTCGAATGATCTCACCACCGATCAGGTCTTGCAAGAA 664
| ||||| || | |||||||||||||||||||||| ||||||| | ||||||| ||||
Sbjct 596 CTTCCTCTAT-TATTCTCTACACCTCGAATGATCT---CACCGATAATGTCTTGCCAGAA 651
Query 665 AAAATCAAACCATACACCAGAAAATGGGAAACTAGTATAATGGAAACCATCCCTGAGCTC 724
|||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 652 AAAATCAAACCATACACCAGAAAATGGGAAACAAGTATAATGGAAACCATCCATGAGCTG 711
Query 725 AAACTTGTGACAAAAGATATGAAGCTTTTTGGCGACAAGCGTAAATGCGAAGTGATCCAT 784
||||||||||||||||||||||||| |||||| |||| | ||||||| ||||||||||||
Sbjct 712 AAACTTGTGACAAAAGATATGAAGCGTTTTGGTGACAGGTGTAAATGTGAAGTGATCCAT 771
Query 785 GAAGTACCGGCCGTGCTATTCTCTACCGGAGGATATACCGGAAACCTCTATCATGAGTTC 844
|||||||| || |||||||||||||||||||| |||||||||||| | ||||||||||||
Sbjct 772 GAAGTACCCGCTGTGCTATTCTCTACCGGAGGGTATACCGGAAACTTGTATCATGAGTTC 831
Query 845 AACGACGGGCTTATTCCTTTGTATATAACATCTAAACGTTTCAACAAAAAGGTTGTCTTT 904
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 832 AACGACGGGCTTATTCCTCTGTATATAACATCTAAACGTTTCAACAAAAAGGTTGTCTTT 891
Query 905 GTGATTGCTGAGTATCACAAGTGGTGGGAGATGAAGTATGGAGATGTTCTCTCTCAGCTC 964
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 892 GTGATTGCTGAGTATCACAAGTGGTGGGAGATGAAGTATGGAGATGTTCTCTCTCAGCTC 951
Query 965 TCTGATTACTC-TCTTATCGACTTCAACAAAGACAAGAGAACTCACTGCTTCAAGGAAGC 1023
|||||||| || |||||| || |||| ||||||||||||||||||||| |||||||||||
Sbjct 952 TCTGATTA-TCCTCTTATTGATTTCAGCAAAGACAAGAGAACTCACTGTTTCAAGGAAGC 1010
Query 1024 TATTGTTGGTCTTAGAATCCATGGTGAGTTAACCGTCGATCCTTCTCAGATGCAAGATGA 1083
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1011 CATTGTTGGTCTTAGAATCCATGGTGAGTTAACCGTTGATCCTTCTCAGATGCAAGATGG 1070
Query 1084 TGGAACAACCATCAATGAGTTCAGAAATGTACTTGATCGAGCTTATAGACCACGAATCAA 1143
| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 1071 TAGAACAACCATCAATGAGTTCAGAAATGTACTTGATCGAGCTTATGGACCCCGAATCAA 1130
Query 1144 CAGACTGGACAGGCTAGAGGAGCAACGATTCCACGCAAGACTAGCACAGAGAAGAAAGGC 1203
||||||||||||||||||||||||||| |||||||||||| ||||| |||||||||||||
Sbjct 1131 CAGACTGGACAGGCTAGAGGAGCAACGGTTCCACGCAAGAGTAGCAAAGAGAAGAAAGGC 1190
Query 1204 TAAGAGGCCAAAACTAGCGTTGTTTTCAAGAACCGGGTCTCGAGGGATAACAAACGAGGA 1263
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1191 TCAGAGGCCAAAACTAGCGTTGTTTTCAAGAACCGGGTCTCGAGGGATAACAAACGAGGA 1250
Query 1264 CCTGATGGTGAAAATGGCTCAGAGGATCGGGTTTGACA-TCGAGGTTTTGAGACCTGACA 1322
||||||||| || ||||||| |||||||||||||| | | |||||||||||||||||||
Sbjct 1251 TCTGATGGTGCAATTGGCTCAAAGGATCGGGTTTGA-AGTTGAGGTTTTGAGACCTGACA 1309
Query 1323 GAACAACGGAACTGGCAAAGATTTACAGAGTG-TTAAACTCAAGCAAAGTCATGGTTGGG 1381
|||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 1310 GAACAACGGAACTGGCAAAGATTTACAGAGTGCTTAA-CTCAAGCAAAGTCATGGTTGGG 1368
Query 1382 GTACATGGAGCAGCCATGACCCATTTTCTGTTCATGAAACCTGGAAGTATCTTTATTCAG 1441
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1369 GTACATGGAGCAGCCATGACCCATTTTCTGTTCATGCAACCTGGAAGTATCTTTATTCAG 1428
Query 1442 ATCATTCCACTGGGAACAGATTGGGCAGCAGAGACATATTATGGAGAACCGGCAAAGAAG 1501
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1429 ATCATTCCATTGGGGACAGATTGGGCAGCAGAGACATATTATGGAGAACCGGCAAAGAAG 1488
Query 1502 CTCGGTCTAGACTACAATGGTTATAAGATTCTTCCAAGAGAGAGCTCATTGTATGAAAAA 1561
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1489 CTCGGTCTAGACTACATTGGTTATAAGATTCTTCCAAGAGAGAGCTCATTGTATGAAAAA 1548
Query 1562 TATGATAAAGATGATCCAATTCTAAAAGATCCAAACAGCATCACTAAGAAAGGATGGCAA 1621
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1549 TATGATAAAGATGATCCAATTCTAAGAGATCCAAACAGCATCACTAAGAAAGGATGGCAA 1608
Query 1622 TTCACAAAGGGGATATACCTGAACGACCAGAAAGTGAGGTTAGATCTCCATAGATTCAAG 1681
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1609 TTCACAAAGGGGATATACCTGAACGGCCAGAAAGTGAGGTTAGATCTCCATAGATTCAAG 1668
Query 1682 AAGCTTTTGATTGATGCGTATGCAAAATCGATTAGGTGACCTGAAATGAGTTTTGAGAGT 1741
||| ||||| ||||||||||||||||||||||||| |||||||||||||||| ||| |||
Sbjct 1669 AAGGTTTTGGTTGATGCGTATGCAAAATCGATTAGCTGACCTGAAATGAGTTCTGAAAGT 1728
Query 1742 TCT-TTTTATTGTTGCTGTATAGTCTGCATAAACTACAGAAATTACAGAGTTCTTTTTGT 1800
| | |||| |||||||||||||||||||| |||||||||| | |||||| ||
Sbjct 1729 TTTATTTTGTTGTTGCTGTATAGTCTGCACAAACTACAGA-------G--TTCTTT--GT 1777
Query 1801 AAAGATTTAAATGAAACC--A---TAAATGAATTCAATGTTTCAGAGACACT 1847
|||||||||||||||||| | ||||||||||||||||| ||||||||||
Sbjct 1778 AAAGATTTAAATGAAACCGTAACATAAATGAATTCAATGTTGCAGAGACACT 1829
Score = 89.8 bits (48), Expect = 7e-17
Identities = 62/68 (91%), Gaps = 4/68 (6%)
Strand=Plus/Plus
Query 1 CTCTCTAAATAAATACTCTGATTTCAAAGCTAAAAC---TTACAACAACACCCACAAAac 57
|||||||||||||||||||||||||||||| | ||| ||||||||||||||| |||||
Sbjct 1 CTCTCTAAATAAATACTCTGATTTCAAAGC-ACAACGCCTTACAACAACACCCAGAAAAC 59
Query 58 ttctctct 65
||||||||
Sbjct 60 TTCTCTCT 67
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69362336145
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5