BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G10330.1
Length=1289
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478363 jgi|Araly1|478363|fgenesh2_kg.3__1064__AT3G10330.1 2041 0.0
> Ahg478363 jgi|Araly1|478363|fgenesh2_kg.3__1064__AT3G10330.1
Length=1294
Score = 2041 bits (1105), Expect = 0.0
Identities = 1235/1297 (95%), Gaps = 12/1297 (1%)
Strand=Plus/Plus
Query 2 AAAACAAATCGTTGAAAAAGTAAGTAAGCTCAAGGCGCGACGAGGAAAAAGACGAAGAAG 61
|||||||||||||||||||| |||||||||||||||||||||||||| |||| |||||||
Sbjct 1 AAAACAAATCGTTGAAAAAGAAAGTAAGCTCAAGGCGCGACGAGGAAGAAGAAGAAGAAG 60
Query 62 AAGAAAGTAACAATCTTTAGTAATCAAAGTCCAATTAGTGAAAA---G-----GGGTTTT 113
||||||| |||||||||| |||| |||||||||| | |||| | |||||||
Sbjct 61 --GAAAGTAGCAATCTTTAGCAATCGGAGTCCAATTACTCAAAAGGGGTTTTAGGGTTTT 118
Query 114 CTTGTGAGAAGAGAAAGAGAAGCTATGAGTGACGCGTTTTGTTCGGACTGTAAGAGGCAC 173
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 119 CTTGTGAG-AGAGAAAGAGAAGCTATGAGTGACGCGTTTTGTTCAGACTGTAAGAGGCAC 177
Query 174 ACGGAGGTTGTGTTTGACCATTCCGCCGGAGATACAGTTTGTTCAGAGTGTGGTCTCGTG 233
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 178 ACGGAGGTTGTGTTTGACCATTCCGCCGGAGATACAGTTTGTTCAGAGTGTGGGCTCGTG 237
Query 234 CTTGAATCTCACTCAATCGATGAAACTTCTGAGTGGCGTACTTTCGCTAATGAGTCCGGT 293
|||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 238 CTTGAATCGCACTCAATCGATGAAACTTCGGAGTGGCGTACCTTCGCTAATGAGTCCGGT 297
Query 294 GATAATGATCCTGTTCGTGTCGGTGGTCCGACGAATCCTCTTTTAGCAGATGGTGGTCTC 353
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 298 GATAATGATCCTGTTCGTGTCGGTGGTCCGACGAATCCTCTTTTAGCTGATGGTGGTCTC 357
Query 354 ACTACTGTCATTTCTAAACCTAATGGATCCTCTGGCGATTTCCTCTCTTCTTCTCTTGGT 413
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 ACTACTGTCATTTCCAAACCTAATGGATCCTCTGGCGATTTCCTCTCTTCTTCTCTTGGT 417
Query 414 CGATGGCAGAATCGTGGATCTAATCCTGATCGTGGCCTTATTGTTGCTTTCAAGACTATC 473
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 418 CGATGGCAGAATCGTGGATCTAATCCCGATCGTGGCCTTATTGTTGCTTTCAAGACTATC 477
Query 474 GCTACCATGGCTGATAGGTTGGGACTTGTTGCGACCATCAAGGACCGAGCGAATGAGATT 533
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 478 GCTACCATGGCTGATAGGTTGGGACTTGTCGCCACCATCAAGGACCGAGCGAATGAGATT 537
Query 534 TATAAAAGGGTAGAGGATCAGAAGTCAAGTAGAGGAAGAAATCAGGATGCTCTTTTGGCT 593
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 TATAAAAGGGTCGAGGATCAGAAGTCAAGTAGAGGAAGAAATCAGGATGCTCTTTTGGCT 597
Query 594 GCTTGTTTATACATTGCTTGCCGGCAAGAAGACAAACCACGGACGGTCAAGGAAATATGC 653
|| |||||||||||||||||||||||||||||||| ||||| || |||||||||||||||
Sbjct 598 GCCTGTTTATACATTGCTTGCCGGCAAGAAGACAAGCCACGAACTGTCAAGGAAATATGC 657
Query 654 TCTGTTGCCAATGGAGCTACTAAGAAGGAGATTGGTCGTGCAAAAGAGTACATAGTCAAA 713
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 658 TCTGTTGCCAATGGAGCTACTAAGAAGGAGATCGGTCGTGCAAAAGAGTACATAGTCAAA 717
Query 714 CAGTTGGGGCTGGAAACCGGACAATTGGTTGAAATGGGTACTATACATGCTGGAGATTTT 773
||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 718 CAGTTGGGGCTCGAAACCGGACAATCAGTTGAAATGGGTACTATACATGCTGGAGATTTT 777
Query 774 ATGAGACGTTTTTGCTCCAATCTTGGTATGACCAACCAAACCGTGAAAGCGGCTCAAGAG 833
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 778 ATGAGACGTTTTTGCTCCAATCTTGGTATGACCAACCAAACCGTGAAAGCTGCTCAAGAA 837
Query 834 TCTGTGCAAAAGTCAGAAGAATTTGATATAAGGAGGAGTCCCATATCGATTGCAGCAGCG 893
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 TCTGTGCAAAAATCAGAGGAATTTGATATAAGGAGGAGTCCCATATCGATTGCAGCAGCG 897
Query 894 GTTATATACATCATAACACAGCTCTCTGATGAGAAGAAGCCTCTTCGAGATATATCAGTG 953
|| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 898 GTGATATACATCATAACACAGCTCTCTGATGAGAAGAAGCCTCTCCGAGATATATCGGTG 957
Query 954 GCAACTGGAGTCGCGGAAGGAACTATAAGAAACTCTTACAAAGATCTTTACCCTCACCTT 1013
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 GCAACTGGAGTCGCGGAAGGAACTATAAGAAACTCTTACAAAGATCTTTACCCTCACCTT 1017
Query 1014 TCCAAGATCATACCAGCTTGGTACGCTAAAGAAGAAGATCTCAAGAACCTTCAAAGCCCT 1073
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 TCGAAGATCATACCAGCTTGGTACGCTAAAGAAGAAGATCTCAAGAACCTTCAAAGCCCT 1077
Query 1074 TGAGTGTCTTCCTCTTCTAATCTCTTACTCGCAACCATACCTTCAAGTTTCGATTGGGAT 1133
||||||||||| ||||||| ||||||||||||| ||| ||||| ||||| |||||||||
Sbjct 1078 TGAGTGTCTTCTTCTTCTACTCTCTTACTCGCAGTCATGCCTTCGAGTTTTGATTGGGAT 1137
Query 1134 TATGGGTTATAAAGTTGTTTT-GTCCAGAAGTGCGACTGGAGGCACGCTTGAACAAGAGT 1192
||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||
Sbjct 1138 TATGGGTTATAAAGTTGTTTTTGTCCAGAAGTGCGACTCGAGCCACGCTTGAACAAGAGT 1197
Query 1193 TTTACAGTAGATTTGTATCACTTTTTCTTCATAAGGTACTATACATTGTTGAATTAATGA 1252
|||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 1198 TTTACAGTAGATTTGTATCACTTTTTCTCCATAAGGTACCATACATTGTTGAATTAATGA 1257
Query 1253 GATGGTATTTCTAGTTGATCATACCATTTTCAGCATC 1289
||||||||||||||||||| |||||||| |||||||
Sbjct 1258 AATGGTATTTCTAGTTGATCCTACCATTTCCAGCATC 1294
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48187367088
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5