BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G10340.1
Length=2584
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928723 jgi|Araly1|928723|scaffold_301180.1 3190 0.0
Ahg487203 jgi|Araly1|487203|fgenesh2_kg.6__337__AT5G04230.1 1336 0.0
> Ahg928723 jgi|Araly1|928723|scaffold_301180.1
Length=2166
Score = 3190 bits (1727), Expect = 0.0
Identities = 2030/2177 (93%), Gaps = 18/2177 (1%)
Strand=Plus/Plus
Query 221 CCGGTTTCTTTAACCGAGTCGGCGCGCATGGAGCTATGCAATCAAAACAATCACATCACC 280
||| |||||||||||| |||||||| |||||||||||||||||||||||| |||||||
Sbjct 1 CCGTTTTCTTTAACCGGGTCGGCGCTCATGGAGCTATGCAATCAAAACAACCACATCA-- 58
Query 281 GCCGTCTCGGGCGATCCGTTGAACTGGAACGCGACGGCCGAAGCTTTGAAAGGGAGCCAC 340
| | ||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 59 -----C-C-GGCGATCCGTTGAACTGGAACGCGACGGCGGACGCTTTGAAAGGGAGCCAC 111
Query 341 CTGGATGAGGTGAAACGAATGGTGAAAGAGTATAGGAAAGAGGCGGTGAAGTTAGGAGGT 400
|||| |||||||||||||||||| |||| |||||||||| |||||||||||||||||||
Sbjct 112 TTGGACGAGGTGAAACGAATGGTGGAAGATTATAGGAAAGGGGCGGTGAAGTTAGGAGGT 171
Query 401 GAGACTTTGACGATTGGTCAAGTAGCCGCCGTGGCTAGAGGA-G-G-AGGAGGA-TCTAC 456
||||| ||||||||||||||||| |||||||| ||||||||| | | ||||||| | |||
Sbjct 172 GAGACGTTGACGATTGGTCAAGTCGCCGCCGTCGCTAGAGGAGGAGAAGGAGGAGT-TAC 230
Query 457 GGTGGAGCTAGCGGAGGAGGCTCGTGCCGGAGTCAAGGCGAGTAGCGAATGGGTGATGGA 516
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 231 GGTGGAGCTGGAGGAGGAGGCTCGTGCCGGAGTCAAGGCGAGTAGCGAATGGGTGATGGA 290
Query 517 GAGCATGAACCGAGGAACGGACAGTTATGGAGTTACCACAGGGTTTGGTGCAACTTCCCA 576
|||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||
Sbjct 291 GAGCATGAACCGAGGAACCGACAGTTATGGAGTCACCACAGGGTTTGGTGCTACTTCCCA 350
Query 577 TAGAAGAACCAAACAAGGCGGTGCACTTCAAAATGAGCTTATTAGGTTCTTGAATGCCGG 636
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 351 TAGAAGAACTAAACAAGGCGGTGCACTTCAAAATGAGCTTATTAGGTTCTTGAACGCCGG 410
Query 637 AATATTTGGCCCCGGCGCCGGGGACACGTCACACACGTTGCCAAAGCCGACAACAAGAGC 696
|||||||||| ||||||||| |||||| |||||||||||||||||||||| ||||||||
Sbjct 411 AATATTTGGCATCGGCGCCGGAGACACGACACACACGTTGCCAAAGCCGACGACAAGAGC 470
Query 697 GGCAATGCTCGTCCGTGTCAACACTCTCCTCCAAGGCTACTCCGGTATACGCTTCGAGAT 756
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 471 GGCAATGCTCGTCCGTGTCAACACTCTCCTCCAAGGCTACTCCGGTATACGCTTCGAGAT 530
Query 757 TCTCGAAGCAATTACAAAGCTTCTCAACCACGAAATCACTCCGTGCCTCCCTCTCCGTGG 816
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 531 TCTCGAAGCCATTACAAAGCTTCTCAACCACGAAATCACTCCGTGCCTCCCTCTTCGTGG 590
Query 817 CACCATCACCGCCTCCGGTGACCTTGTTCCTCTCTCTTACATCGCCGGACTTCTCACTGG 876
||||||||| ||||||||||||||| | ||||||||||||||||||||||| ||||| ||
Sbjct 591 CACCATCACGGCCTCCGGTGACCTTATCCCTCTCTCTTACATCGCCGGACTCCTCACCGG 650
Query 877 CCGTCCCAACTCCAAAGCCGTGGGTCCCT-CTGGTGAGACTCTCACTGCCTCTGAGGCCT 935
|||||| |||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 651 CCGTCCTAACTCCAAAGCCGTGGGTCCCTTC-GGTGAGACTCTCACTGCCTCTGAGGCCT 709
Query 936 TTAAGCTCGCCGGAGTATCGTCCTTTTTCGAGCTGCAGCCTAAGGAAGGACTAGCACTTG 995
|||||||||| ||||||||||| ||||| ||||| |||||||||||||||||||||||||
Sbjct 710 TTAAGCTCGCGGGAGTATCGTCTTTTTTTGAGCTTCAGCCTAAGGAAGGACTAGCACTTG 769
Query 996 TGAACGGGACAGCGGTTGGATCGGGTTTGGCCTCAACGGTTTTGTTCGATGCAAATATTT 1055
|||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 770 TGAACGGGACAGCGGTTGGATCGGGTTTGGCCTCGACGGTTCTGTTCGATGCAAATATTT 829
Query 1056 TGGCTGTTTTATCGGAAGTTATGTCTGCCATGTTCGCAGAGGTTATGCAAGGGAAACCGG 1115
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 830 TGGCTGTTTTGTCGGAGGTTATGTCTGCCATGTTCGCAGAGGTTATGCAAGGGAAACCGG 889
Query 1116 AGTTTACAGATCATCTTACGCATAAGCTCAAGCACCATCCCGGTCAGATCGAAGCCGCCG 1175
||||||| || |||||||||||||| ||||||||||||||||||||||||||||| || |
Sbjct 890 AGTTTACCGACCATCTTACGCATAAACTCAAGCACCATCCCGGTCAGATCGAAGCAGCGG 949
Query 1176 CAATTATGGAACATATATTAGACGGAAGCTCTTACGTTAAAGAAGCTCAACTTCTCCACG 1235
| ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 950 CGATTATGGAACATATATTGGACGGAAGCTCTTACGTTAAAGAAGCTCAACTTATCCACG 1009
Query 1236 AAATGGATCCTCTTCAAAAACCTAAACAAGATCGGTACGCTTTACGTACGTCACCACAAT 1295
||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||
Sbjct 1010 AAATGGATCCTCTTCAAAAACCTAAACAAGATCGGTACGCTTTACGTACATCGCCGCAAT 1069
Query 1296 GGCTTGGGCCGCAGATTGAAGTGATCAGAGCGGCTACTAAAATGATTGAGCGTGAGATCA 1355
||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 1070 GGCTTGGCCCGCAGATTGAAGTGATCAGATCGGCCACTAAAATGATTGAGCGTGAGATCA 1129
Query 1356 ACTCTGTTAATGATAACCCTTTGATAGATGTGTCGAGGAACAAGGCGTTGCACGGTGGAA 1415
|||| ||||| ||||||||||||||||||||||| ||||| ||||| |||||||| || |
Sbjct 1130 ACTCGGTTAACGATAACCCTTTGATAGATGTGTCAAGGAATAAGGCTTTGCACGGCGGGA 1189
Query 1416 ATTTCCAAGGGACACCGATCGGTGTTGCCATGGATAATTCCCGTCTAGCCATTGCTTCCA 1475
|||||||||||||||| || ||||| |||||||||||||| ||||||||||||||||| |
Sbjct 1190 ATTTCCAAGGGACACCAATTGGTGTCGCCATGGATAATTCTCGTCTAGCCATTGCTTCGA 1249
Query 1476 TTGGGAAACTCATGTTTGCGCAGTTTTCTGAACTAGTGAACGATTTCTACAACAATGGTT 1535
| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1250 TAGGGAAACTCATGTTCGCCCAGTTTTCTGAACTAGTGAACGATTTCTACAACAATGGTT 1309
Query 1536 TGCCTTCTAATCTATCTGGTGGGAGAAACCCTAGTCTTGATTACGGGTTTAAAGGCGCGG 1595
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1310 TGCCTTCTAATCTATCCGGTGGGAGAAACCCTAGTCTTGATTACGGATTTAAAGGCGCGG 1369
Query 1596 AAATAGCCATGGCTTCTTATTGCTCCGAGCTTCAGTTCCTGGCTAATCCCGTGACCAACC 1655
| |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 1370 AGATAGCCATGGCTTCTTATTGCTCCGAGCTTCAGTTCTTGGCTAATCCGGTGACCAACC 1429
Query 1656 ATGTCCAAAGCGCAGAGCAGCATAACCAAGACGTTAATTCCCTAGGGCTAATCTCTAGCA 1715
||||||||||||||||||||||||||||||| ||||||||||||||| | ||||| |||
Sbjct 1430 ATGTCCAAAGCGCAGAGCAGCATAACCAAGATGTTAATTCCCTAGGGTTGATCTCAAGCC 1489
Query 1716 GGAAAACTGCAGAAGCAGTGGATATCCTCAAGCTAATGTCCACAACCTACTTAGTCGCGC 1775
||||||| ||||||||||| ||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1490 GGAAAACCGCAGAAGCAGTCGATATCCTCAAGCTAATGTCCACGACCTATTTAGTCGCGC 1549
Query 1776 TTTGCCAAGCCGTTGATCTAAGACATCTTGAAGAGAATCTGAAGAAGGCGGTTAAATCAG 1835
| ||||||||| |||||||||||||||||||||||||||||||||| || ||||||| |
Sbjct 1550 TGTGCCAAGCCATTGATCTAAGACATCTTGAAGAGAATCTGAAGAAAGCAATTAAATCTG 1609
Query 1836 CAGTGAGTCAGGTGGCGAAACGGGTCTTAACCGTTGGTGCCAACGGGGAGCTACATCCGT 1895
||||||||||||||||||||||||||||||||||||| | ||| || ||||||||||| |
Sbjct 1610 CAGTGAGTCAGGTGGCGAAACGGGTCTTAACCGTTGGGGTCAATGGTGAGCTACATCCTT 1669
Query 1896 CAAGGTTCACAGAACGTGATGTCCTCCAAGTGGTTGACCGAGAGTACGTGTTCTCATACG 1955
| |||||||| ||||| ||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 1670 CGAGGTTCACTGAACGCGATGTTCTCCAAGTGGTTGACCGAGAATACGTGTTCTCATACG 1729
Query 1956 CAGACGATCCCTGCAGCCTCACTTACCCGCTAATGCAGAAACTTAGACACATTCTTGTAG 2015
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1730 CAGACGATCCCTGCAGCCTCACTTACCCGTTAATGCAGAAACTTAGACACATTCTTGTAG 1789
Query 2016 ACCACGCTTTAGCGGATCCAGAACGCGAGGCCAATTCCGCGACATCGGTTTTCCACAAAA 2075
| |||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||
Sbjct 1790 ATCACGCTTTAGCGGATCCAGAACGCGAGGCCAATTCCGCTACATCAGTTTTCCAGAAAA 1849
Query 2076 TCGGAGCTTTTGAAG-CCGAGCTGAAACTGCTTCTCCCTAAAGAAGTAGAACGCGTCCGG 2134
||||||||||||| | ||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1850 TCGGAGCTTTTGA-GTCCGAGCTGAAACTGCTTCTCCCTAAAGAAGTGGAACGTGTCCGG 1908
Query 2135 GTTGAATACGAGGAAGGAACATCGGCTATAGCTAACCGGATTAAGGAATGTCGGTCTTAT 2194
||||| |||||||||||| | ||| |||||||||||||||||||||||||||||||||||
Sbjct 1909 GTTGAGTACGAGGAAGGATCCTCGACTATAGCTAACCGGATTAAGGAATGTCGGTCTTAT 1968
Query 2195 CCATTGTATCGGTTTGTCCGCGATGAGCTAAATACTGAACTGCTTACTGGAGAGAATGTT 2254
|| |||| |||||||||||| | |||||| ||||||||||||| |||||||||||||||
Sbjct 1969 CCGCTGTACCGGTTTGTCCGCAACGAGCTAGATACTGAACTGCTCACTGGAGAGAATGTT 2028
Query 2255 CGGTCGCCAGGAGAGGAGTTTGATAAAGTGTTCTTAGCGATTTCTGATGGAAAACTTATT 2314
|||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 2029 CGGTCGCCGGGAGAGGAGTTTGATAAAGTGTTCTCGGCGATTTCTGATGGAAAGCTTATT 2088
Query 2315 GATCCGTTGTTGGAATGTCTCAAGGAGTGGAACGGAGCTCCGGTTTCAATCTGTTGAAAA 2374
|||||||||||||||||||||||||||||||||||||||||| || | ||||||| ||||
Sbjct 2089 GATCCGTTGTTGGAATGTCTCAAGGAGTGGAACGGAGCTCCGATTCCGATCTGTTAAAAA 2148
Query 2375 TCTTTTTCGATAGATCT 2391
||||||| ||||||||
Sbjct 2149 TCTTTTTTTATAGATCT 2165
> Ahg487203 jgi|Araly1|487203|fgenesh2_kg.6__337__AT5G04230.1
Length=2113
Score = 1336 bits (723), Expect = 0.0
Identities = 1643/2075 (79%), Gaps = 112/2075 (5%)
Strand=Plus/Plus
Query 323 GCTTTGAAAGGGAGCCACCTGGATGAGGTGAA-ACGAATGGTGAAAGAGTATAGGAAA-G 380
||||| ||||||||||||||||| |||||||| | | |||||||| || ||||||||| |
Sbjct 73 GCTTTAAAAGGGAGCCACCTGGAGGAGGTGAAGAAG-ATGGTGAAGGATTATAGGAAAGG 131
Query 381 AGGCGGTGAAGTTAGGAGGTGAGACTTTGACGATTGGTCAAGTAGCCGCCGTGGCTAGAG 440
| ||||| || | || || ||||| |||| || ||||| || || || ||||| ||
Sbjct 132 A-ACGGTGCAGCTCGGCGGAGAGACGCTGACCATCGGTCAGGTTGCGGCGGTGGC--GA- 187
Query 441 GAGGAGGAGGATCTACGGTGGAGCTAGCGGAGGAGGCTCGTGCCGGAGTCAAGGCGAGTA 500
| |||||| | | || |||||||| | ||||||||||||||||| || ||||||||||
Sbjct 188 GTGGAGGA--A-CGACAGTGGAGCTTTCTGAGGAGGCTCGTGCCGGTGTAAAGGCGAGTA 244
Query 501 GCGAATGGGTGATGGAGAGCATGAACCGAGGAACGGACAGTTATGG-AGTTACCACAGGG 559
| || |||||||||||||||||||| || || || |||| |||||| | | ||||| ||
Sbjct 245 GTGAGTGGGTGATGGAGAGCATGAATCGTGGTACCGACACTTATGGTA-TCACCACTGGA 303
Query 560 TTTGGTGCAACTTCCCATAGAAGAACCAAACAAGGCGGTGCACTTCAAAATGAGCTTATT 619
|||||| || |||| | ||| || || | ||||| | ||| |||||||| |||||||||
Sbjct 304 TTTGGTTCATCTTCTCGTAGGAGGACTGACCAAGGTGCTGCTCTTCAAAAAGAGCTTATT 363
Query 620 AGGTTCTTGAATGCCGGAATATTTGGC-CCCGGCG-CCG-G--G--GACACGTCACACAC 672
|||| |||||| ||||| ||| || || |||||| | | | | ||||||||| ||||
Sbjct 364 AGGTACTTGAACGCCGGGATA-TTCGCTACCGGCGACGGAGATGACGACACGTCAAACAC 422
Query 673 G-TTGCCAAAGCCGACAACAAGAGCGGCAATGCTCGTCCGTGTCAACACTCTCCTCCAAG 731
| || || || | | ||||||||||| |||||| |||| || ||||| ||||||||||
Sbjct 423 GCTT-CCCCGGCTGGCTACAAGAGCGGCGATGCTCATCCGCGTAAACACCCTCCTCCAAG 481
Query 732 GCTACTCCGGTATACGCTTCGAGATTCTCGAAGCAATTACAAAGCTT-CTCAACCACG-A 789
||||||| ||||||||||| ||||| |||||||| || ||||| || ||||||| | |
Sbjct 482 GCTACTCTGGTATACGCTTTGAGATACTCGAAGCCATCACAAA-ATTCCTCAACC-GGAA 539
Query 790 AATCACTCCG-TGCCTCCCTCTCCGTGGCACCATCACCGCCTCCGGTGACCTTGTTCC-T 847
|||||| ||| | |||||||||||| |||||||| ||||||||||| ||||| ||||| |
Sbjct 540 AATCACACCGCT-CCTCCCTCTCCGAGGCACCATTACCGCCTCCGGCGACCTCGTTCCAT 598
Query 848 CTCTCTTACATCGCCGGACTTCTCACT-GGCCGTCCCAACTCCA-AAGCCGTGGGTCCC- 904
| || || || | ||| |||||| | || || ||||||| || | | |||| |||
Sbjct 599 -TATCGTATATTGTTGGATTTCTCA-TCGGGCGCCCCAACT-CACGATCTTTGGG-CCCA 654
Query 905 TCTGGTGAGACT-CTCACTGCCTCTGAGGCCTTTAAGCTCGCCGGAGTATCGTCCTTTTT 963
|| || |||| | ||||| ||||| |||||||| ||||| ||||||||||| ||||||||
Sbjct 655 TCCGGCGAGA-TCCTCACCGCCTCGGAGGCCTTCAAGCTTGCCGGAGTATCATCCTTTTT 713
Query 964 CGAGCTGCAGCCTAAGGAAGGACTAGCACTTGTGAACGGGACAGCGGTTGGATCGGGTTT 1023
||| || ||||| |||||||| || || || ||||| ||||| ||||| ||||| | |||
Sbjct 714 CGAACTCCAGCCCAAGGAAGGGCTTGCGCTCGTGAATGGGACTGCGGTGGGATCTGCTTT 773
Query 1024 GGCCTCAACGGTT-TTGTTCGATGCAAATATTTTGGCTGTTTTAT-CGGAAGTT-ATGTC 1080
||||| || ||| ||| |||||| || |||||||| ||||| | |||| ||| | ||
Sbjct 774 AGCCTCCAC-GTTACTGTACGATGCCAACATTTTGGCGGTTTT-TGCGGAGGTTGCT-TC 830
Query 1081 TGCCATGTTCGCAGAGGTTATGCAAGGGAAACCGGAGTTTACAGATCATCTTACGCATAA 1140
|||||||| || ||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 831 GGCCATGTTTGCTGAGGTTATGCAGGGGAAACCGGAGTTTACGGATCATCTTACGCATAA 890
Query 1141 GCTCAAGCACCATCCCGGTCAGATCGAAGCCGCCGCAATTATGGAACATATATTAGACGG 1200
|||||||||||||| |||||||| |||||||||||||| ||||| ||||| ||||||||
Sbjct 891 ACTCAAGCACCATCCTGGTCAGATAGAAGCCGCCGCAATCATGGAGCATATCTTAGACGG 950
Query 1201 AAGCTCTTACGTTAAAGAAGCTCAACTTCTCCACGAA-ATGGATCCTCTTCAAAAACCTA 1259
||||||||| || ||||||||||||| ||||||| || || ||||| ||||| |||||||
Sbjct 951 AAGCTCTTATGTCAAAGAAGCTCAACATCTCCAC-AAGATTGATCCGCTTCAGAAACCTA 1009
Query 1260 AACAAGATCGGTACGCTTTACGTACGTCACCACAATGGCTTGGGCCGCAGATTGAAGTGA 1319
|||||||||| |||||| | || ||||| || |||||||| || || |||||||| ||||
Sbjct 1010 AACAAGATCGTTACGCTCTGCGAACGTCGCCGCAATGGCTCGGACCACAGATTGAGGTGA 1069
Query 1320 TCAGAGCGGCTACTAAA-ATGATTGAGCGTGAGATCAACTCTGTTAATGATAACCCTTTG 1378
| ||||| || || ||| ||||| || |||||||| ||||| || || ||||||||||||
Sbjct 1070 TAAGAGCAGCGAC-AAAGATGATCGAACGTGAGATAAACTCGGTAAACGATAACCCTTTG 1128
Query 1379 ATAGATGTGTCGA-GGAACAAGGCGT-TGCACGGTGGAAATTTCCAAGGGACACCGATCG 1436
|| ||||| || | ||||||| || | | |||||||| |||||||| ||||||||||| |
Sbjct 1129 ATCGATGTTTC-ACGGAACAAAGC-TATTCACGGTGGGAATTTCCAGGGGACACCGATTG 1186
Query 1437 GTGTTGCCATGGATAATTCCCGTCTAGCCA-TTGCTTCCATTGGGAAACTCATGTTTGCG 1495
|||| ||||||||||| | ||||||| || ||||||| | ||||| || ||||| ||
Sbjct 1187 GTGTCGCCATGGATAACACTCGTCTAG-CACTTGCTTCGGTCGGGAAGCTAATGTTCGCT 1245
Query 1496 CAGTTTTCTGAACTAGTGAACGATTTCTACAACAATGGTTTGCCTTCTAATCTATCTGGT 1555
||||| ||||||| || || |||| ||||||||| || || || ||||||||||||||
Sbjct 1246 CAGTTCACTGAACTCGTAAATGATTACTACAACAACGGGTTACCCTCTAATCTATCTGGC 1305
Query 1556 GGGAGAAACCCTAGTCTTGATTACGGGTTTAAAGGCGCGGAAATAGCCATGGCTTCTTAT 1615
||||||||||||||||||||||||||||| |||||||| ||| |||||||||||||||||
Sbjct 1306 GGGAGAAACCCTAGTCTTGATTACGGGTTAAAAGGCGCAGAAGTAGCCATGGCTTCTTAT 1365
Query 1616 TGCTCCGAGCTTCAGTTCCTGGCTAATCCCGTGACCAACCATGTCCAAAGCGCAGAGCAG 1675
||||| |||||||||||| | |||||||| ||||| ||||||||| ||||||| |||
Sbjct 1366 TGCTCAGAGCTTCAGTTCTTAGCTAATCCTGTGACGAACCATGTCGAAAGCGCCTCGCAA 1425
Query 1676 CATAACCAAGACGTTAATTCCCTAGGGCTAATCTCTAGCAGGAAA-ACTGCAGAAGCAGT 1734
|| || ||||| ||||| || || ||||| ||||| ||| | ||| || |||||||| ||
Sbjct 1426 CACAATCAAGATGTTAACTCTCTTGGGCTGATCTCGAGCCG-AAAGACAGCAGAAGCTGT 1484
Query 1735 GGATATCCTCAAGCTAATGTCCACAACCTACTTAGTCGCGCTT-TGCCAAGCCGTTGATC 1793
|| |||||||||||| ||||| ||||| ||||| || || || ||||||||| ||||||
Sbjct 1485 GGTTATCCTCAAGCTCATGTCAACAACTTACTTGGTAGCT-TTGTGCCAAGCCTTTGATC 1543
Query 1794 TAAGACATCTTGAAGAGAAT-CTGAAGAAGGCGGTTAAATCAG-CAGTGAGTCAGG-TGG 1850
| ||||| |||||||| ||| || || || |||||||| || | ||||| ||| ||
Sbjct 1544 TGAGACACCTTGAAGA-AATTCTAAAAAAAGCGGTTAAGG-AGGCTGTGAGCCAGACTGC 1601
Query 1851 CGAAACGGGTCTTAACCGTTGGTGCCAACGGGGAGCTACAT-CCGTCAAGGTTCACAGAA 1909
| ||| | || | | | | | | || | | ||| ||| ||| ||| ||
Sbjct 1602 CAAAA-GCGT-T---C--TAGCT---ATCGA--A-C--CATTCCG-CAAA---CAC-GA- 1640
Query 1910 CGTGATGTCCTCCAAGTGGTTGACCGAGAGTACGTGTTCTCATACGCAGACGATCCCTGC 1969
|| || || ||| ||| || |||| || ||||| ||||| || | || || ||| |
Sbjct 1641 CGACAT-TC-TCCGAGTTGTCAACCGCGAATACGTCTTCTCCTATGTTGATGA-CCCAAC 1697
Query 1970 -AGCCTCACTTACCCGCTAATGCAGAAACTTAGACACATTCT-TGTAGACCACGCTTTAG 2027
||||||||| |||| ||||||||||| || || ||| | || | | ||| | |||||||
Sbjct 1698 TAGCCTCACTAACCCTCTAATGCAGAAGCTGAGGCACGTCCTCT-TCGACAAAGCTTTAG 1756
Query 2028 CGGATCCAGAACGCGAGGCCAATTCCGCGACATCGGTTTTCC-ACAAAATCGGAGCTTTT 2086
| || | ||| ||||| | | | ||| ||||||||| | ||||||||||| ||
Sbjct 1757 CTGAACTGGAAGGCGAGAC-A-----G--ACA-CGGTTTTCCGA-AAAATCGGAGCGTTC 1806
Query 2087 GAAGCCGAGCTGAAA-CTGCTTCTCCCTAAAGAAGTAGAACGCGTCCGGGTTGAATACGA 2145
||||||||||||||| || || || ||||||||||| ||| | ||| || || |||||
Sbjct 1807 GAAGCCGAGCTGAAATCT-CTCCTTCCTAAAGAAGTGGAAAGAGTCAGGACAGAGTACGA 1865
Query 2146 GGAA-GGAACATCGGCTATAGCTAACCGGATTAAGGAA-TGTCGGTCTTATCCATTGTAT 2203
| || || ||||| | | |||||||| || ||| || ||||| || ||||| ||||
Sbjct 1866 G-AACGGTACATCTAATGTGGCTAACCGAATCAAG-AAGTGTCGATCGTATCCGCTGTAC 1923
Query 2204 CGGTTTGTCCGCGATGAGCTAAATACTGAACT-GCTTACTGGAGAGAATGTTCGGTCGCC 2262
|||||||| || || || || | ||| | | ||| || ||||||||||| ||||| ||
Sbjct 1924 CGGTTTGTGCGAGACGAACTCGAGACT-AGGTTGCTAACCGGAGAGAATGTCCGGTCACC 1982
Query 2263 AGGAGAGGAGTTTGATAAAGTGTTCTTAGCGATTTCTGATGGAAAACTTATTGATCCGT- 2321
||||||||| ||||| ||||| ||| |||||| ||| | || ||||| || || || |
Sbjct 1983 AGGAGAGGATTTTGACAAAGTCTTCACAGCGATCTCTCAAGGCAAACTCATAGACCC-TC 2041
Query 2322 TGTTGGAATGTCTCAAGGAGTGGAACGGAGCTCCG 2356
|||| ||||||||||| ||||||||||||||||||
Sbjct 2042 TGTTCGAATGTCTCAAAGAGTGGAACGGAGCTCCG 2076
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97434846710
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5