BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G10350.2
Length=1601
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478365 jgi|Araly1|478365|fgenesh2_kg.3__1066__AT3G10350.1 1105 0.0
> Ahg478365 jgi|Araly1|478365|fgenesh2_kg.3__1066__AT3G10350.1
Length=1861
Score = 1105 bits (598), Expect = 0.0
Identities = 733/793 (92%), Gaps = 29/793 (4%)
Strand=Plus/Plus
Query 811 AATCGTATTTGATACTGCACCAACGGGTCATACGCTAAGGCTACTCTCTTTACCTGATTT 870
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 770 AATTGTGTTTGATACTGCACCAACGGGTCATACGCTAAGGCTACTCTCTTTACCTGATTT 829
Query 871 CTTGGATGCATCCATTGGTAAAATCTTGAAGCTTAGACAGAAAATAACCTCGGCTACTTC 930
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 830 CTTGGATGCGTCCATTGGTAAAATCTTGAAGCTTAGACAGAAAATAACCTCAGCTACTTC 889
Query 931 AGCGATCAAATCAGTTTTTGGGAAAGAAGAAAAGGGGCCTGATGCTGCCGACAAATTGGA 990
||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 890 AGCGATCAAATCAGTCTTTGGTAAAGAAGAAAATCGGCCTGATGCTGCCGACAAATTGGA 949
Query 991 AAAACTAAGAGAAAGGATGGTTAAAGTTCGCGAGCTTTTCCGTGACACAGAGTCAACAGA 1050
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 950 ACGACTAAGAGAAAGGATGGTTAAAGTTCGCGAGCTTTTCCGTGACACAGAGTCAACAGA 1009
Query 1051 ATTCGTCATTGTCACTATCCCAACGGTAATGGCTGTCAGCGAGTCTTCTAGGTTAAGTGC 1110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1010 ATTCGTCATTGTCACTATCCCAACGGTAATGGCTGTCAGCGAGTCTTCTAGGTTAAGTGC 1069
Query 1111 TTCCTTGAAGAAGGAAAGTGTTCCCGTCAAAAGACTCATTGTTAATCAGCTTCTCCCGCC 1170
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1070 TTCCTTGAAGAAGGAAAGTGTTCCCGTCAAAAGACTCATTGTTAATCAGATTCTCCCGCC 1129
Query 1171 ATCCTCCTCAGATTGCAAATTTTGCTCTATTAAGAGAAAGGACCAAATGCGGGCTCTTGA 1230
|||||||||||| ||||| |||||||| |||||||||||||| |||||||||||||||||
Sbjct 1130 ATCCTCCTCAGACTGCAAGTTTTGCTCAATTAAGAGAAAGGATCAAATGCGGGCTCTTGA 1189
Query 1231 TATGATCCGGGAGGATTCAGAACTCTCTGCTTTGACACTGATGGAGGCTCCGCTGGTTGA 1290
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1190 TATGATCCGGGAGGATTCCGAACTCTCTGCTTTGACACTGATGGAGGCTCCACTGGTTGA 1249
Query 1291 TATGGAGATCAGAGGTGTCCCTGCTCTGCGCTTCTTGGGCGATATCATTTGGAAATAAGA 1350
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1250 TATGGAGATCAGAGGTGTCCCTGCTCTGCGCTTCTTGGGTGATATCATTTGGAAATAAGA 1309
Query 1351 TCATTACATATTATCACCACAAGGATGAAGAACAAGCAGGTTCACTTGTATGAGATAGTG 1410
|||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1310 TCATTACACATTATCAACACAAGGATGAAGAACAAGCAGGTTCACTTGTATGAGATAGT- 1368
Query 1411 TTGGTTAATACATTACATAGTTTTTGGTATAGATGTTGATGTTTGTCTTTGATGGGTTTG 1470
|| || | | || |||||||||| || ||| ||||||||||||
Sbjct 1369 TT--TT-------------G-----G-TACAGATGTTGATATT-GTCCTTGATGGGTTTG 1406
Query 1471 GTCTTTGGCTAAAA-ATGAATATCGACGAGTTTTTCAAACTGTTAACAGATTCAGTATTT 1529
|||||||| |||| |||||||| ||| ||| || ||||||||||||| |||||||||||
Sbjct 1407 GTCTTTGGG-AAAACATGAATATTGACAAGTGTTCCAAACTGTTAACAAATTCAGTATTT 1465
Query 1530 GCTACATTTTGGTGGGTGTAAAATGTTCAGTGTAAAACTTTAG-AGCTTTTAAAATAAAA 1588
|||||||||||||||||||||||||||| | ||||||||||| | ||||||||||||||
Sbjct 1466 ACTACATTTTGGTGGGTGTAAAATGTTCAAT-TAAAACTTTAGTA-CTTTTAAAATAAAA 1523
Query 1589 AATATAGCAATTC 1601
| |||||||||||
Sbjct 1524 A-TATAGCAATTC 1535
Score = 774 bits (419), Expect = 0.0
Identities = 452/468 (97%), Gaps = 1/468 (0%)
Strand=Plus/Plus
Query 328 TTC-AGTGAAATCAGTAGCTAGCCCAACGGAGACGATTTCAGAATTCGATGAGATGGTCT 386
||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 259 TTCAAGTGAAATCAGTAGCTAGCCCAACGGAGACGATTTCGGAATTCGAAGAGATGGTCT 318
Query 387 CCGGCACGAAACGAAAGTATTACATGCTCGGTGGGAAAGGAGGAGTGGGCAAAACTAGTT 446
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 319 CCGGTACTAAACGAAAGTATTACATGCTCGGTGGGAAAGGAGGAGTGGGCAAAACTAGTT 378
Query 447 GTGCTGCTTCTTTAGCTGTGAGATTCGCCAACAATGGACACCCAACTCTGGTTGTATCTA 506
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||
Sbjct 379 GTGCTGCTTCTTTAGCTGTCAGATTCGCCAACAATGGACACCCAACTCTTGTTGTGTCTA 438
Query 507 CAGATCCAGCACATTCCTTGAGCGATTCTTTTGCTCAGGACTTGACTGGAGGAATGCTTG 566
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 439 CAGATCCAGCACATTCCTTGAGCGATTCTTTTGCTCAGGACTTGACAGGAGGAATGCTTG 498
Query 567 TCCCTGTAGAAGGACCCGAAGCTCCTTTATTTGCTTTAGAAATAAACCCTGAGAAGGCTA 626
|||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 499 TCCCTGTAGAAGGACCTGAAGCTCCTTTATTTGCTCTAGAAATAAACCCTGAGAAGGCTA 558
Query 627 GGGAAGAGTTTCGTAGTGCCTCGCAGATGAATGGAGGAACTGGGGTGAAAGATTTTATGG 686
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 559 GGGAAGAGTTTCGTAGTGCCTCGCAGATGAATGGAGGAACTGGGATGAAAGATTTTATGG 618
Query 687 ATGGTATGGGACTTGGAATGCTTGTAGAACAGTTGGGGGAGCTTAAACTTGGAGAATTGC 746
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 619 ATGGTATGGGACTTGGGATGCTTGTAGAACAGTTGGGGGAGCTAAAACTTGGAGAATTGC 678
Query 747 TCGACACACCGCCTCCTGGATTGGATGAAGCCATAGCCATTTCTAAGG 794
| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 679 TAGACACACCGCCTCCTGGATTGGATGAAGCCATTGCCATTTCTAAGG 726
Score = 318 bits (172), Expect = 7e-86
Identities = 196/207 (95%), Gaps = 4/207 (2%)
Strand=Plus/Plus
Query 33 AGCAGACGaaaaaaaTGGCGACTCTGTCTTCCTATCTGTTATCTTCTCCTCCTCTATGCA 92
|||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 62 AGCAGACG-AAAAAATGGCGACTCTGTCTTCCTACCTATTATCTTCTCCTCCTCTATGCA 120
Query 93 AATCCCGATTCTCGGCAACAAGTCTCGTCTCAGGAATTGATTTCATCTCTTTCTCTCCTC 152
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |
Sbjct 121 AATCCCGATTCTCGGCAACAAGTCTCGTCTCGGGAATTGATTTCATCTCTTTCTCCCCAC 180
Query 153 GAACAACTCTCTCCTCGTCATCCACTGTCTTGCCGGCGATTCTTTCTCTTTCCGTTAAAC 212
|||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 181 GAACAACTCTCTCCTC---ATCCACTGTATTGCCGGCGATTCTTTCTCTTTCCGTTAAAT 237
Query 213 ATAATCGCCGGAGAAACTCGCTTCAAG 239
|||||||||||||||||||||||||||
Sbjct 238 ATAATCGCCGGAGAAACTCGCTTCAAG 264
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59992135875
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5