BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G10400.1
Length=1078
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928729 jgi|Araly1|928729|scaffold_301186.1 1199 0.0
> Ahg928729 jgi|Araly1|928729|scaffold_301186.1
Length=819
Score = 1199 bits (649), Expect = 0.0
Identities = 763/815 (94%), Gaps = 20/815 (2%)
Strand=Plus/Plus
Query 21 AAGTGGAAATGAAGAAGAGGAAGATTCATCATAGCGACGACGAAGAGGACGACACTTTCT 80
|||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||
Sbjct 18 AAGTGGAAATGAAGAAGAAGAAGATTCATCGCAGCGACGATGAAGAGGACGACACTTTCT 77
Query 81 ACTATCGCTATTCCTCCGTCGCGGCACCACCACCTTCGAACCCTAAAC-ACCAACCTTCT 139
|||||||||| || |||||||| ||||||||||||||||||||||||| ||| ||||
Sbjct 78 ACTATCGCTACTCTTCCGTCGCAGCACCACCACCTTCGAACCCTAAACAACC-TTCTTCC 136
Query 140 TCCTCCGCCAAATCATCAGCTCCCGGCGGCGGATCTGGCGGCTTAGCTCCTTCAAAATCA 199
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 137 TCCTCCGCGAAATCATCAGCTCCCGGCGGCGGATCTGGCGGCTTAGCTCCTTCAAAATCA 196
Query 200 ACACTCTACGTCTCCAATCTCGATTTCTCCCTCACCAATTCCGACATCCACACTCTATTC 259
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 197 ACACTCTACGTCTCCAATCTCGATTTCTCCCTCACCAATTCCGACATCCACACTCTCTTC 256
Query 260 TCCACTTTCGGCAAGGTCGCGAGAGTCACTGTTCTCAAAGATCGCCACACTCGCCAATCT 319
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 257 TCCACCTTCGGCAAGGTCGCGAGAGTCACTGTTCTCAAAGATCGCCACACTCGCCAATCC 316
Query 320 CGTGGCGTCGCGTTCGTGCTCTACGTCTCTCGTGAAGACGCGGCTAAAGCGGCGCGTTCT 379
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 317 CGTGGCGTCGCGTTCGTGCTCTACGTTTCTCGTGAAGACGCGGCTAAAGCGGCGCGTTCT 376
Query 380 ATGGACGCCAAGATTCTTAATGGTCGGAAACTGACGGTTTCGATCGCCGCTGATAATGGA 439
|||||||| ||||||||||| ||||||||| |||||||||||||||| || |||||||||
Sbjct 377 ATGGACGCGAAGATTCTTAACGGTCGGAAATTGACGGTTTCGATCGCTGCCGATAATGGA 436
Query 440 CGTGCGTCGGAGTTTATTAAGAAGAGAGTTTACAAGGATAAATCGAGGTGTTACGAGTGT 499
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 437 CGTGCGTCGGAGTTTATTAAGAAGAGAGTTTACAAGGATAAATCCAGGTGTTACGAGTGT 496
Query 500 GGAGACGAAGGGCATCTTTCGTACGAGTGCCCTAAAAATCAGTTAGGTCCAAGGGAGAGA 559
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 497 GGAGACGAAGGGCATCTCTCGTATGAGTGCCCTAAAAATCAGTTAGGTCCAAGGGAGAGA 556
Query 560 CCACCGCCGCCGAAGAAAAGGGGGCGGCGGAAGGAGGAGGAAGGTGAGGCTGAGGAAATT 619
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 557 CCACCGCCGCCGAAGAAAAGGGGGCGGCGGAAGGAGGATGAAGGTGAGGCTGAGGAAATT 616
Query 620 AG---TTGGTCTGCGGCGGCGCCTTCGTTGGCTGTGGCGGAGGAGGAATTTGAGGAGGAG 676
|| ||||||||||||| || | |||||| ||| | | ||||||||||||
Sbjct 617 AGGGATTGGTCTGCGGCGCCG--T-CGTTGG---------AGG-G-A-TTTGAGGAGGAG 661
Query 677 AATTGGGCTTCGGTGGTGGATAATGAAGCTggagagaggttgagaaaaagagaagcagag 736
|||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||
Sbjct 662 AATTGGGCTTCGGTGGTGGACAATGAAGCCGGAGAGAGGTTGAGAATGAGAGAAGCAGAG 721
Query 737 gaagaagaagagaggaggatgaagagaaaggagaagaaagTTAGCTACTTTAGTGATGAG 796
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 722 GAAGAAGAAGAGAGGAGGAAGAAGAGAAAGGAGAAGAAAGTTAGCTACTTTAGTGATGAG 781
Query 797 AGTGATGATGAAGATTAGCTTCTTAGATTCATTTT 831
|||||||||||||||||||||||| ||| ||||||
Sbjct 782 AGTGATGATGAAGATTAGCTTCTTTGATCCATTTT 816
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40143431601
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5