BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G10405.1
Length=1073
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478371 jgi|Araly1|478371|fgenesh2_kg.3__1072__AT3G10405.1 1376 0.0
> Ahg478371 jgi|Araly1|478371|fgenesh2_kg.3__1072__AT3G10405.1
Length=996
Score = 1376 bits (745), Expect = 0.0
Identities = 929/1015 (92%), Gaps = 23/1015 (2%)
Strand=Plus/Plus
Query 57 TAATGAACAGGTTTTGATGCGGTTTATGTACATGACACATGGCAAAACATGATTGGCTAC 116
|||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1 TAATAAACTGGTTTTGATGCGGTTTCTGTACATGACACATGGCAAAACATGATTGGCTCC 60
Query 117 ATGAACGATTTTATCTAACAAGCAAGATAGAGATGAGATTAGGAGACAAGGAGCAATGTC 176
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AGGAACGATTTTATCTAACAAGCAAGATAGAGATGAGATTAGGAGACAAGGAGCAATGTC 120
Query 177 GATTTCTTCGTTGGGGTCTGCAATCTCAAAGCCAACTTCTTCATCATCTTCATATACGTA 236
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 121 GATTTCTTCGTTGGGGTCTGCAATCTCAAGGCCAACTTCTTCATCATCTTCATATACCTA 180
Query 237 CTTAGGAAGCTCTTCTCGCATCTTTGGGCTAGTTACGTCTTCTTTGTTATGGACAAAGAG 296
||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 181 CTTAGTAAGCTCTTCTCGCATCTTTGGGCTCGCTACGTCTTCTTTGTTATGGACAAAGAA 240
Query 297 TAAATCTCACCACACAAACACAAAGCTCAAGAAGCAAAAGCTATGTGTTAGAAATTCAGC 356
|||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||
Sbjct 241 CAAATCTCACCACACAAACACAAAGCTTAAGCAGCAAAAGCCATGTGTTAGAAATTCAGC 300
Query 357 TCAAGAGATTCCAAAGACACTTGAGGAAGATTCCAAGTTTGTACCTTTAGATCCTCAAGA 416
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TCAAGAGATTCCACAGACACTTGAGGAAGATTCCAAGTTTGTACCTTTAGATCCTCAAGA 360
Query 417 TCCTCGATTCGGCCCTCCAGTTTTGCTGTTGCTTGGCCTTCAACTTCATGAAGCACAAAA 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TCCTCGATTCGGCCCTCCAGTTTTGCTGTTGCTTGGCCTTCAACTTCATGAAGCACAAAA 420
Query 477 GATACAAGAACTTCTCAAGGAACTCGATGGCGAATTCATGGAGATTGTGTTCTGTACAGA 536
||||||||| ||||| |||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 421 GATACAAGAGCTTCTTAAGGAACTTGATGGCGAATTCATGGAGATTGTTTTCTGTACAGA 480
Query 537 CGATATGATCA-AGCGTTCGTTATGGGAAGCAGTTACCACAAAACAGCCTGACCTGAAGA 595
||||||||| | || ||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 481 AGATATGATCCCA-CGCTCGTTATGGGAAGCAGTTAACACAAAACAGCCTGACCTGAACA 539
Query 596 GAGTGAAAATCGCGGAA-TCACTGCCTCGGATCTGCTTCTTATCTGGTTTGACAGGAGAG 654
||||||| ||||| || || || |||||||| ||||| |||||||||||||||||||||
Sbjct 540 GAGTGAATGTCGCG-AAGTCGCTTCCTCGGATATGCTTTTTATCTGGTTTGACAGGAGAG 598
Query 655 GAGATGATGATGTTCATTGATGCATT-CCCAGAAACTGGGCTGGAACCAGTTGTGTTTGC 713
|||||||||||||||||||||||||| ||| ||||||||||| ||||| |||||||||||
Sbjct 599 GAGATGATGATGTTCATTGATGCATTTCCC-GAAACTGGGCTAGAACCCGTTGTGTTTGC 657
Query 714 AGCTATGGTTCCGAACAGTGCTGATAAACCTATCTTTGAGTTAACTGAAGAAATCATGGG 773
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 658 AGCTATGGTTCCGAACAGTGCTGATAAACCTATCTTTGAGTTAATTGAAGAAATCATGGG 717
Query 774 AGATCATGAGTTACTGACCGGGAGCAGTTCCAGCTGAAAGTTTTGAGTGAGGAAGACAGC 833
||||||||||||| |||| |||||| ||||||||||||| |||||||||||||||||| |
Sbjct 718 AGATCATGAGTTATTGACTGGGAGCGGTTCCAGCTGAAATTTTTGAGTGAGGAAGACAAC 777
Query 834 AGGACAGCTTTAAAATTCTTCAGGTTTCTGCAACAAGACTCTTAAGACTTTGTGCATTAC 893
|| |||||||||||| ||||||||||||||||||| ||| || |||| ||| ||||||||
Sbjct 778 AGAACAGCTTTAAAAGTCTTCAGGTTTCTGCAACATGACGCTAAAGATTTTATGCATTAC 837
Query 894 CCAAAGTATATTGTACAACAGTGCAGTCTTCAAATAAAAAAGTGAGCTGCACAAGAATGC 953
|||||||||||||||||| |||| ||||||| ||| ||||||| || |||||||||||||
Sbjct 838 CCAAAGTATATTGTACAAGAGTGTAGTCTTCCAATGAAAAAGTAAGATGCACAAGAATGC 897
Query 954 AATCAG-AAATTAAGAACTTACACAAGTTATATGAGTCAAAATGTAACTTCACTTGGACA 1012
||| | |||||||||||| ||||||||| | | | || | | || | ||
Sbjct 898 AATGATCAAATTAAGAACTGACACAAGTT-TC--ACT-----TGGA-CA-CA-T---ACC 943
Query 1013 TATCCAGTCATCAAACAAATGTAAAATGAAGACGAAACCAAATCAATCTCTTTTT 1067
| | ||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 944 CA-C-AGTCACCAAACAAATGTAAAATGAAGACAAAACCAAATCAATCTCTTTTT 996
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39952817016
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5