BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G10410.1
Length=1828
Score E
Sequences producing significant alignments: (Bits) Value
Ahg903921 jgi|Araly1|903921|Al_scaffold_0003_1049 2087 0.0
> Ahg903921 jgi|Araly1|903921|Al_scaffold_0003_1049
Length=1632
Score = 2087 bits (1130), Expect = 0.0
Identities = 1186/1214 (98%), Gaps = 0/1214 (0%)
Strand=Plus/Plus
Query 388 GCATGTTCTACTTCTTCTTCGAGTCACGGAACAAGAAGGATGCTCCTGTTGTGATTTGGT 447
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 419 GCATGTTCTACTTCTTCTTCGAGTCACGCAACAAGAAGGATGCTCCTGTTGTGATTTGGT 478
Query 448 TGACGGGAGGGCCTGGATGTAGTAGTGAGTTGGCTGTGTTCTATGAGAATGGTCCTTTCA 507
||||||||||||||||||| || |||||||||||| ||||||||||||| ||||||||||
Sbjct 479 TGACGGGAGGGCCTGGATGCAGCAGTGAGTTGGCTATGTTCTATGAGAACGGTCCTTTCA 538
Query 508 AGATCACTAGTAACATGTCTCTTGCTTGGAATGAGTATGGATGGGATCAGGTTTCCAATC 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 AGATCACTAGTAACATGTCTCTTGCTTGGAATGAGTATGGATGGGATCAGGTTTCCAATC 598
Query 568 TTCTGTATGTTGATCAGCCTGTTGGAACTGGTTTCAGCTACACGACAGATAAAAGTGATA 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 TTCTGTATGTTGATCAGCCTGTTGGAACTGGTTTCAGCTACACGACAGATAAAAGTGATA 658
Query 628 TCCGTCATGACGAAACTGGAGTTAGCAATGATCTTTATGATTTTCTGCAGGCTTTCTTTG 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 TCCGTCATGACGAAACTGGAGTTAGCAATGATCTTTATGATTTTCTGCAGGCTTTCTTTG 718
Query 688 CGGAGCACCCTAAGTTGGCAAAAAACGACTTTTATATTACTGGAGAGTCATATGCTGGGC 747
| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 719 CAGAGCACCCTAAGTTGGCCAAAAACGACTTTTACATTACTGGAGAGTCATATGCTGGGC 778
Query 748 ACTATATCCCAGCTTTTGCTTCCCGAGTCCATAAAGGAAACAAGGCTAATGAGGGAGTTC 807
||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 ACTATATTCCGGCTCTTGCTTCCCGAGTCCATAAAGGAAACAAGGCTAATGAGGGAGTTC 838
Query 808 ATATTAACCTAAAGGGATTCGCTATTGGAAATGGGCTTACAGATCCTGCACTCCAATACC 867
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 839 ATATTAACCTAAAGGGATTCGCCATTGGAAATGGGCTTACAGATCCTGCACTCCAATACC 898
Query 868 CAGCCTATCCTGACTACGCTTTGGAAATGGGTCTAATCACGCAAAAAGAGCATGATCGCT 927
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 899 CAGCCTATCCTGACTACGCTTTGGAAATGGGTTTAATCACGCAAAAAGAGCATGATCGTT 958
Query 928 TAGAAAAGATTGTCCCACTGTGCGAACTATCAATCAAGCTTTGTGGAACTGATGGCACAA 987
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 959 TAGAAAAGATTGTCCCACTGTGCGAACTATCAATTAAGCTTTGTGGAACTGATGGCACAA 1018
Query 988 CTTCTTGTTTGGCATCATATCTTGTCTGCAACTCTTTGTTCAGTGGTGTAATGAGTCATG 1047
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 1019 CTTCTTGTTTGGCATCATATCTTGTTTGCAACTCCTTGTTCAGTGGTGTAATGAGTCATG 1078
Query 1048 CTGGTGGAGTAAACTATTACGACATCAGGAAGAAGTGCGTGGGAAGTTTGTGCTACGATT 1107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 CTGGTGGAGTAAACTATTACGACATCAGGAAGAAGTGCGTGGGAAGTTTGTGCTACGATT 1138
Query 1108 TCTCAAACATGGAGAAATTTTTGAATCTGCAATCTGTGAGGAAGTCACTTGGTGTTGGGG 1167
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1139 TCTCAAACATGGAGAAATTTTTGAATCTGCAATCTGTGAGGAAGTCGCTTGGTGTTGGGG 1198
Query 1168 ACATAGACTTTGTCTCCTGCAGTACTTCAGTCTATCAGGCAATGCTTGTAGATTGGATGA 1227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 ACATAGACTTTGTCTCCTGCAGTACTTCAGTCTATCAGGCAATGCTTGTAGATTGGATGA 1258
Query 1228 GGAATCTCGAGGTTGGAATTCCCACGCTCTTGGAAGATGGAATCAGCCTCCTTGTGTATG 1287
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1259 GGAATCTCGAGGTTGGAATTCCCACACTCTTGGAAGATGGAATCAGCCTCCTTGTGTATG 1318
Query 1288 CTGGAGAATATGATCTTATCTGCAACTGGCTCGGTAACTCGAGGTGGGTGAATGCAATGG 1347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 CTGGAGAATATGATCTTATCTGCAACTGGCTCGGTAACTCGAGGTGGGTGAATGCAATGG 1378
Query 1348 AGTGGTCAGGGAAAACAAACTTTGGGGCGGCTAAAGAAGTTCCGTTTATTGTGGATGGCA 1407
|||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1379 AGTGGTCAGGGAAAACGAACTTTGGGGCGGCTGAAGAAGTTCCGTTTATTGTGGATGGCA 1438
Query 1408 AAGAAGCAGGCTTGTTAAAGACTTATGAACAACTCAGTTTCCTCAAGGTGAGAGATGCAG 1467
|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1439 AAGAAGCAGGCTTGTTGAAGACTTATGAACAACTCAGTTTCCTCAAGGTGCGAGATGCAG 1498
Query 1468 GACACATGGTTCCAATGGACCAGCCTAAAGCTGCATTGAAAATGCTGAAGCGATGGATGG 1527
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1499 GACACATGGTTCCAATGGACCAGCCAAAAGCTGCATTGAAAATGCTGAAGCGATGGATGG 1558
Query 1528 AGAATTCACTTATCGAAGATGCTACTGTGACTGTTGCTGCTCAGGGAGGAGAGGAACTGG 1587
||||||| |||||||||||||||||||| ||||| |||||||| ||||||||||||||||
Sbjct 1559 AGAATTCGCTTATCGAAGATGCTACTGTTACTGTGGCTGCTCAAGGAGGAGAGGAACTGG 1618
Query 1588 TTGCTCAGATGTGA 1601
||||||||||||||
Sbjct 1619 TTGCTCAGATGTGA 1632
Score = 510 bits (276), Expect = 1e-143
Identities = 320/341 (94%), Gaps = 3/341 (1%)
Strand=Plus/Plus
Query 51 ATGGAGAAACTAACTTTTCTCAGCCTTCTCCTGCATTTCGTCGTCTTCATCGCTTCAACG 110
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1 ATGGAGAAACTAACTTTTCTCAGCCTTCTTTTGCATTTCGTCGTCTTCATCGCTTCAACG 60
Query 111 ATACCGTCTTCATCGTTCCTCTTGAATGATCGCACCTTTGAGAGATCGAACTTGCCGTCT 170
| |||||||||||||| |||||||| ||||||||||| ||| |||| |||||||||||
Sbjct 61 TTTCCGTCTTCATCGTTTCTCTTGAACGATCGCACCTTCGAGCGATCAAACTTGCCGTCG 120
Query 171 ACGCGCGCGGAGAAGCTGATCCGTGAGCTAAACCTTTTCCCGCAGCAGGATCTGAATGTG 230
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 121 ACGCGCGCGGAGAAGCTGATCCGGGAGCTAAACCTTTTCCCGCAGCAGGATCTGAATGTG 180
Query 231 ATCGATGTCGCTGATTTGCCTCTCACTGCTGCGGAGGGACCGGGGATTGTTGAACGGAAG 290
||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||
Sbjct 181 ATCGATGTCGCTGATTTGCCTCTCACTGCCGCGGAGAGATCGGGGATTGTTGAACGGAAG 240
Query 291 TTCGTATTCCCGAATATACTTGCCGAT---GGTGGCCCTACTGTCGACGATTTAGGTCAT 347
||||||||||||||||||||||||||| |||||| | |||||||| ||||||||||||
Sbjct 241 TTCGTATTCCCGAATATACTTGCCGATAATGGTGGCGCAACTGTCGAAGATTTAGGTCAT 300
Query 348 CATGCTGGTTATTACAAGCTCCCGAAATCTCGTGGCGCAAG 388
||||||||||||||||||||||| |||||||||||||||||
Sbjct 301 CATGCTGGTTATTACAAGCTCCCAAAATCTCGTGGCGCAAG 341
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68638621490
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5