BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G10440.1
Length=1766
Score E
Sequences producing significant alignments: (Bits) Value
Ahg903923 jgi|Araly1|903923|Al_scaffold_0003_1051 1260 0.0
> Ahg903923 jgi|Araly1|903923|Al_scaffold_0003_1051
Length=1551
Score = 1260 bits (682), Expect = 0.0
Identities = 843/918 (92%), Gaps = 22/918 (2%)
Strand=Plus/Plus
Query 866 CAGTTCTAAGACTCGAG-AAGCCAGCCAAACAG-AAACCTTGCAAAAGGTGGTTGACGCC 923
||||| ||| ||||||| | | ||||||| | ||| ||||||||| ||||||||| ||
Sbjct 639 CAGTTTTAAAACTCGAGCCA-CTGGCCAAACGGTAAA-CTTGCAAAAAGTGGTTGACACC 696
Query 924 AAAGAAATTAAGGGGGATGCAAGGTTTTCTTTGACAAAGCATTCTGACTGGTTAAAATCT 983
| ||||| ||||| |||||||||| ||||||||| ||||||| |||||||| ||||||||
Sbjct 697 AGAGAAAATAAGGAGGATGCAAGGGTTTCTTTGAAAAAGCATACTGACTGGGTAAAATCT 756
Query 984 CAAGAACCTGAGCCATCTGAAAGCCTATACGAGTC-A--AGGTTCCCTTTGAGAAGGCGT 1040
|||||||||||||||||||||| || ||||||||| | |||||||||||||||||||||
Sbjct 757 CAAGAACCTGAGCCATCTGAAAACCCATACGAGTCAAGCAGGTTCCCTTTGAGAAGGCGT 816
Query 1041 TCTGCCCGGTTAAAATCTCAAGAACCTGAGCCATCTGAAAGCTTCCATGACTCAATAGAG 1100
|||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 817 TCTGCCCGGTTAAAATCTCAAGAACCTGAGCCATCTGAAAGCCTCCATGAGTCAATAGAG 876
Query 1101 ACAACCAAGAGGAGGAGGTCGGCAATAAG-G-T---CTG-CT---ATGTTTAATATCCAA 1151
||||||| ||||| |||||| ||||||| | | | | || ||||| |||||||||
Sbjct 877 ACAACCAGGAGGAAGAGGTCTACAATAAGCGTTAGGCAGTCTGGGATGTTCAATATCCAA 936
Query 1152 GAGCTGGGCGTTATTCAAAACTTGAACGGTTTACCTGATGATCAAGAGATTGCTGCAAAG 1211
||||||||||||||||| |||||||| ||||||| |||||||||||||||| ||||||||
Sbjct 937 GAGCTGGGCGTTATTCAGAACTTGAATGGTTTACATGATGATCAAGAGATTTCTGCAAAG 996
Query 1212 GCCAGATGCTCTGCACGTGAACAGTCTACCGGGTCTAAACCCGAAGCAGTAGAACCACAT 1271
||| ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 997 GCCGGATGCTCTGTGCGTGAACTGTCTACCGGGTCTAAACCCGAAGCAGTAGAACCACAT 1056
Query 1272 GACACAAAAGAGATAATCGGGAAAAGCAGGATATCTTTGAGAAGACAGTCTGCGAGGTTT 1331
||| ||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1057 GACTCAAAACAGATAACCGGGAAAAGCAGGGTATCTTTGAGAAGACAGTCTGCGAGGTTT 1116
Query 1332 AATTTCCAAGAGCTGGGCGTGACTGAAAACTTGAATGGTCCACATGATGATCAAACGATT 1391
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1117 AATTTCCAAGAGCTGTGCGTGACTGAAAACTTGAATGGTCCACATGATGATCAAACGATT 1176
Query 1392 GCTGCAAATGCCAGATGCTGTGCAAGTGAACAGTCTATCGGGTCTAAACCCGAAGCAGTA 1451
||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 1177 GCTGCAAATGCCAGATGCTGTGCAAGTGAACAGTCTATCAGGTCTAAACACGAAGCAGTA 1236
Query 1452 GAACCACATGACATTGAA-GAGAGAATCGGGAAAATCAGAGTCTCTTCAAGAAGACAATC 1510
|||||||||||||| ||| |||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1237 GAACCACATGACAT-GAAAGAGACAATCGGGAAAAGCAGAGTCTCTTCAAGAAGACAATC 1295
Query 1511 TGCAAACATTGAAACTCCGAGAGCCATCAAAGAA-CCTGCAAATCCGCCTTTGCATGATG 1569
|||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||
Sbjct 1296 TGCAAACATTGAAACTCCGAGAGCCATCAAAGAATCC-GCAGATCCGCCTTTGCATGATG 1354
Query 1570 ACAATGTTGAGGAGTCTAGTCA-GATATCATGTTCAGTTTCAATGGAGCTTAAAAGAGAA 1628
||| | |||||||||||||||| | |||||| || ||||||||||||||||||||||||
Sbjct 1355 ACATTATTGAGGAGTCTAGTCATG-TATCATCATCGGTTTCAATGGAGCTTAAAAGAGAA 1413
Query 1629 TCAAAGAAGAAACCAACAGGCGACGAATCAGAGGAAATGAGAAAAACAACTGTTGGAAGA 1688
|||||||| ||||||||| |||| ||||||||||||||||| ||||||||||||||||||
Sbjct 1414 TCAAAGAACAAACCAACATGCGATGAATCAGAGGAAATGAGGAAAACAACTGTTGGAAGA 1473
Query 1689 CCTTCAAGGCAAGCTGCTGAAAAAATCAAATCGTACAAGGAACCTTCACTTAAGGAGAAG 1748
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1474 CCTTCAAGGCAAGCTGCTGAAAAAATCAAATCGTACAAGGAACCCTCACTTAAGGAGAAG 1533
Query 1749 ATGCGAGGGGGCTTCTGA 1766
||||||||||||||||||
Sbjct 1534 ATGCGAGGGGGCTTCTGA 1551
Score = 316 bits (171), Expect = 3e-85
Identities = 189/198 (95%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 48 ATGGTTCGAGCGACGGTTCTGAATGTCGGTGATCACGCCAGTGAAGGTGTGCGTACTAAC 107
|||||||| ||||||||||| |||||||||||||| ||| |||||||||||| || ||||
Sbjct 1 ATGGTTCGCGCGACGGTTCTAAATGTCGGTGATCATGCCGGTGAAGGTGTGCCTATTAAC 60
Query 108 AAAGCTAAAGGAGAGAAAATGGTTCTGGAACCTCCGATGAACAGTGCACAAAGACGAAAG 167
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAAGCTAAAGGAGAGAAAATGGTTCTGGAACCTCCGATGAACAGTGCACAAAGACGAAAA 120
Query 168 TTGGGGGATATTACTAATTTGCAGAATCAGAAGAATCTAATGAATCAGGGAGCGAAGCAT 227
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TTGGGGGATATTACTAATTTGCAGAATCAGAAGAATCTAATGAATCAGGGAGCGAAGCAG 180
Query 228 CAGCAACAAGCTATATTA 245
||| ||||||||||||||
Sbjct 181 CAGAAACAAGCTATATTA 198
Score = 311 bits (168), Expect = 1e-83
Identities = 216/239 (90%), Gaps = 3/239 (1%)
Strand=Plus/Plus
Query 549 AAGGCTCAAGCAAATGCTTGTGGTGGGGCTTGCAAAACCTTTCAGCCAAATGATGCAGAT 608
|||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 400 AAGGCTCATGCAAATGCTTGTGGTGGGGCTTGCAGAACCTTTCAGCCAAATGACGCAGAT 459
Query 609 CATGAGCATGCTTCCGGGAGCTCCAACGCTAACTCATTGCAAAGAAATGAGAAAGCCAAC 668
|||||| ||||||| | |||||| |||| |||||||||||||| ||||||||||||||||
Sbjct 460 CATGAGAATGCTTCAGAGAGCTCTAACGTTAACTCATTGCAAATAAATGAGAAAGCCAAC 519
Query 669 AGTAAAAGGAGAGTTTCTGGAAGGAAGAATCCCGCCAATTCCGAGGTATTAGATATAATT 728
| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||
Sbjct 520 AATAAAAGGAGAGTTTCTGGAAGGAAGAATCCTGCCAATTCCGAAGTATTAGATATTATT 579
Query 729 GGCAGATCGGG-AGAGACATGTCAGATGGAAGACAACATTGACAACAAGAAGTTGGTCT 786
| ||| | || ||||||||||| || ||||||||||||||||||||||| ||| |||
Sbjct 580 GATAGA-CTGGCAGAGACATGTCCGACAGAAGACAACATTGACAACAAGAAATTG-TCT 636
Score = 191 bits (103), Expect = 2e-47
Identities = 184/218 (84%), Gaps = 26/218 (12%)
Strand=Plus/Plus
Query 294 CTGATGAAAGTCGTCA-TGGAGAGAGATGGAATCAAAAGTGATCTGAAGAAACTTAGGAT 352
|||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||
Sbjct 211 CTGATGAAAGTCGTCACT-GAGAGAGATGGAATCAAAAGTGAGCTGAAGAAACTTAGGAT 269
Query 353 TGAATTTCAGAAGGTTCAAGAACAGAATTTGCTACTTGCCCAGGCTAACACTCGTATCTT 412
||| |||||||||||||||||||| |||||||||||||||||||| || | || | |
Sbjct 270 TGACTTTCAGAAGGTTCAAGAACAAAATTTGCTACTTGCCCAGGC-AA-A--CG---C-T 321
Query 413 GGCGGAGTTCAATACAAGCAAAGACCAACTGAAGGTACTTCAGCACGAACTTGGTTGCAA 472
| | | || | | | | ||||||||||||||||||||||||||||||||
Sbjct 322 --C---G-T--AT-CTTG----G--C-GCTGAAGGTACTTCAGCACGAACTTGGTTGCAA 365
Query 473 GAATGGGTTAGTCATGGCCAGGAAAATGCTGCTTAAGG 510
||||||||||||||||||||||||| | ||||||||||
Sbjct 366 GAATGGGTTAGTCATGGCCAGGAAATTACTGCTTAAGG 403
Score = 176 bits (95), Expect = 5e-43
Identities = 167/201 (83%), Gaps = 8/201 (4%)
Strand=Plus/Plus
Query 1317 CAGTCTGCGAGGTTTAATTTCCAAGAGCTGGGCGTGACTGAAAACTTGAATGGTCCACAT 1376
||||||| || ||| ||| |||||||||||||||| | | | |||||||||||| ||||
Sbjct 913 CAGTCTGGGATGTTCAATATCCAAGAGCTGGGCGTTATTCAGAACTTGAATGGTTTACAT 972
Query 1377 GATGATCAA-ACGATTGCTGCAAATGCCAGATG--CTGTGCAAGTGAACAGTCTATCGGG 1433
||||||||| | |||| ||||||| ||| |||| |||||| |||||| ||||| ||||
Sbjct 973 GATGATCAAGA-GATTTCTGCAAAGGCCGGATGCTCTGTGC--GTGAACTGTCTACCGGG 1029
Query 1434 TCTAAACCCGAAGCAGTAGAACCACATGACATTGAAG-AGAGAATCGGGAAAATCAGAGT 1492
|||||||||||||||||||||||||||||| | || ||| || |||||||| ||| ||
Sbjct 1030 TCTAAACCCGAAGCAGTAGAACCACATGAC-TCAAAACAGATAACCGGGAAAAGCAGGGT 1088
Query 1493 CTCTTCAAGAAGACAATCTGC 1513
|||| |||||||| |||||
Sbjct 1089 ATCTTTGAGAAGACAGTCTGC 1109
Score = 86.1 bits (46), Expect = 8e-16
Identities = 66/76 (87%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 945 AGGTTTTCTTTGACAAAGCATTCTGACTGGTTAAAATCTCAAGAACCTGAGCCATCTGAA 1004
||||| |||||| || || ||||| | ||||||||||||||||||||||||||||||||
Sbjct 796 AGGTTCCCTTTGAGAAGGCGTTCTGCCCGGTTAAAATCTCAAGAACCTGAGCCATCTGAA 855
Query 1005 AGCCTATACGAGTCAA 1020
||||| | |||||||
Sbjct 856 AGCCTCCATGAGTCAA 871
Score = 62.1 bits (33), Expect = 1e-08
Identities = 47/54 (87%), Gaps = 0/54 (0%)
Strand=Plus/Plus
Query 1027 CTTTGAGAAGGCGTTCTGCCCGGTTAAAATCTCAAGAACCTGAGCCATCTGAAA 1080
|||||| || || | ||| | || ||||||||||||||||||||||||||||||
Sbjct 725 CTTTGAAAAAGCATACTGACTGGGTAAAATCTCAAGAACCTGAGCCATCTGAAA 778
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66277026300
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5