BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G10460.1

Length=640
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg478378 jgi|Araly1|478378|fgenesh2_kg.3__1079__AT3G10460.1         525    1e-148


> Ahg478378 jgi|Araly1|478378|fgenesh2_kg.3__1079__AT3G10460.1
Length=531

 Score =  525 bits (284),  Expect = 1e-148
 Identities = 362/400 (91%), Gaps = 4/400 (1%)
 Strand=Plus/Plus

Query  3    ATGAAGTTACGTGTGACGATATTTCTGATGGTTGTATGTTTATACACCGAAAATGTGATA  62
            ||||||||| ||||||| ||||||||||| |||||||| |||||||||||| ||||||||
Sbjct  1    ATGAAGTTAGGTGTGACAATATTTCTGATTGTTGTATGCTTATACACCGAACATGTGATA  60

Query  63   GGAGGATCGGTGTTTATCTATAACAACCTGCCCCACGGACACTATTTACAAGTGAAATGC  122
            ||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |||
Sbjct  61   GGAGGATCGGTGTTTATCTATAACAACCTGCACCACGGACACTATTTACAAGTGCATTGC  120

Query  123  AAATCTGGAGACACCAATCTTGGTTTCCACGTGAGACGGCCCGGT-CGGTTTTACAATTA  181
            ||||| ||||||| |||||| |||  |||||||||||| |||||| |||   |||| |||
Sbjct  121  AAATCCGGAGACAGCAATCTCGGTGACCACGTGAGACGCCCCGGTGCGG-CGTACAGTTA  179

Query  182  CGCTTTCACTGATCATATACTTGGAAAAACGCTTTATTGGTGTCATCTATGGAAAGGTAA  241
              ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  180  TTCTTTCACTGATCATATATTTGGAAAAACGCTTTATTGGTGTCATCTATGGAAAGGTAA  239

Query  242  AAACTGGGAGGATCATGTGGTGATCGTTGCCTACGAAAGTAGGGATTTGCCTCATCGCGA  301
              |||||||| ||||||||| |||||||||||||||||||| | | ||||||||||||||
Sbjct  240  GGACTGGGAGAATCATGTGGCGATCGTTGCCTACGAAAGTAAGCAGTTGCCTCATCGCGA  299

Query  302  CAATTGGGTGAGGTGGTCGGCCAGGGAATCTGGCATCTATCAAAATGTTAACGGTGAGGA  361
            ||||||||| || ||||||| |||||||  |||||||||||||||||| |||||||||||
Sbjct  300  CAATTGGGTTAGATGGTCGGTCAGGGAAAATGGCATCTATCAAAATGTGAACGGTGAGGA  359

Query  362  GAGATT-CCGTTTCAGGTATAATTGGGATGGTCACGTTTA  400
            || ||| || ||||||||||||||||||||||||||||||
Sbjct  360  GA-ATTACCATTTCAGGTATAATTGGGATGGTCACGTTTA  398



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23445593955


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5