BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G10470.1
Length=1504
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478379 jgi|Araly1|478379|fgenesh2_kg.3__1080__AT3G10470.1 2128 0.0
Ahg939836 jgi|Araly1|939836|scaffold_600380.1 363 3e-99
> Ahg478379 jgi|Araly1|478379|fgenesh2_kg.3__1080__AT3G10470.1
Length=1419
Score = 2128 bits (1152), Expect = 0.0
Identities = 1352/1443 (94%), Gaps = 35/1443 (2%)
Strand=Plus/Plus
Query 57 ATCTCTCTATATA-CTCAATGGAAGCAGCTGCGGAGGCTGTATCAGCCGCTAGGGAGCAA 115
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATCTCTCTATATAGC-CAATGGAAGCAGCTGCGGAGGCTGTATCAGCCGCTAGGGAGCAA 59
Query 116 TCATTGATCCTTAAAGGGAAACGGACTAAGCGGCAACGTCCTCAGTCCCCAATCCCTTTC 175
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 60 TCATTGATCCTTAAAGGGAAACGGACTAAGCGGCAACGTCCGCAGTCCCCAATCCCTTTC 119
Query 176 TCTATCATTCCTCCTATGTCTTCGCATGAACCGGATGCTGAAGAAGAGTCTACTAGTCTT 235
|||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 120 TCTATCATCCCTCCTTTGTCTTCGCATGAACCGGATGCTGAAGAAGAGTCCACTAGTCTT 179
Query 236 GTTTCCAAGGAGAAGAGTCTCAATGATGAAATCAACAACAATAACATCAAGAATAATAAC 295
|||||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||
Sbjct 180 ATTTCCAAGGAGAAGAGTCTCAATGATGAGATCAACAACAATAACAACAAGAATGATAAC 239
Query 296 AATACTTTGATCAATGGTGTTACATCTTCATCTTCTGCCTCTTCATCTTCCAACAACAAT 355
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 240 AATACTTTGATCAATGATGTTACATCTTCATCTTCTGCCTCTTCATCTTCCAACAAAAAT 299
Query 356 GCCACATTAAAGGCCACGGCTGACGAAGAAGATCAAGATATGGCTAATTGTTTGATCCTC 415
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 300 GCCACATTAAAGGCCACGGCTGACGAGGAAGATCAAGATATGGCTAATTGTTTGATCCTT 359
Query 416 CTCGCCCAAGGTCACTCTCTTCCCCACCTCCAACCGCAACCGCACCCCCAACAACAAACA 475
||||||||||| |||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 360 CTCGCCCAAGGCCACTCTCTTCCCCACCACCAACCGCAACCGCACCCGCAACAACAAACA 419
Query 476 AGACAGCTTATGATGAGTTACCAAGATTCCGGTAACAACAACAACAATGCGTATAGATCT 535
|||||||||||||| |||||||| || |||||||| ||||||||| ||||||||||||
Sbjct 420 AGACAGCTTATGATAAGTTACCAGGAATCCGGTAATAACAACAAC---GCGTATAGATCT 476
Query 536 AGCAGCAGGAGGTTTCTAGAGACATCTTCATCTAACGGGACCACAACGAACGGTGGTGGA 595
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 477 AGCAGCAGGAGGTTTCTAGAGACATCTTCATCTAATGGGACCACAACGAATGGTGGTGGA 536
Query 596 GGCAGAGCCGGTTACTATGTTTACCAGTGCAAAACATGTGACCGGACTTTTCCGTCTTTC 655
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 GGCAAAGCTGGTTACTATGTTTACCAGTGCAAAACATGTGACCGGACTTTTCCGTCTTTC 596
Query 656 CAAGCTCTTGGTGGGCATAGAGCCAGCCACAAGAAGCCTAAAGCCGCTATGGGTCTTCAC 715
||||||||||| || |||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 597 CAAGCTCTTGGCGGCCATAGAGCCAGCCACAAGAAGCCTAAAGCCGCCACGGGTCTTCAC 656
Query 716 TCTAACCATGACCACAAGAAGTCTAACTACGATGACGCCGTTTCTCTCCATCTCAACAAC 775
|| ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 657 TCCAACCATGACCACAAGAAATCTATCTACGATGACGCCGTTTCTCTCCATCTCAACAAC 716
Query 776 GTTCTCACCACAACTCCTAACAACAATAGTAACCATAGATCGCTTGTGGTATACGGCAAA 835
||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct 717 GTTATCACCACAACTCCTAACAACAATAGTAACCATAGATCGCTTGTGGCATACGGTAAA 776
Query 836 GGTAGTAATAATAAGGTCCATGAATGTGGGATATGTGGAGCCGAATTCACATCCGGGCAA 895
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 GCTAGTAATAATAAGGTCCATGAATGTGGGATATGTGGAGCCGAATTCACATCCGGGCAA 836
Query 896 GCATTAGGTGGTCACATGAGACGCCATAGAGGTGCAGTGGTAGCCGCAGCAGCCGCCTCT 955
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 837 GCATTAGGTGGTCACATGAGACGCCATAGAGGTGCAGTGGTGGCCGCAGCAGCCGCCTCT 896
Query 956 ACCGCCACCGTATCGGTTGCGGCCATTCCGGCTACTGCAAACACGGCTTTGTCATTGTCG 1015
|||||||| ||| ||||||| |||| || |||||||||||||||||||||||||||||||
Sbjct 897 ACCGCCACAGTAGCGGTTGCAGCCACTCAGGCTACTGCAAACACGGCTTTGTCATTGTCG 956
Query 1016 CCAATGTCGTTTGATCAGATGTCGGAGGGTCCAATTCAGGCTCCCGTTAAGAGAGCGAGG 1075
|| ||||||||||||||||||||||| ||||| |||||||||| ||||||||||| |||
Sbjct 957 CCTATGTCGTTTGATCAGATGTCGGATGGTCCGGTTCAGGCTCCGGTTAAGAGAGCAAGG 1016
Query 1076 AGCGCGGTTGTGTCGTTAGATTTAGATCTGAATCTACCTGCCCCGGAAGATGAGAATCGG 1135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 AGCGCGGTTGTGTCGTTAGATTTAGATCTGAATCTACCTGCCCCGGAAGATGAGAATCGG 1076
Query 1136 GTCAACGGATTAAGCTTTGCTTCAAAGcaagaacacgaacaagaacatgaacaaacacaa 1195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 GTCAACGGATTAAGCTTTGCTTCAAAGCAAGAACACGAACAAGAACATGAACAAACACAA 1136
Query 1196 cagaagaaacagagagaagaacaaaagTCTCTTGTCTTGTCTTCTGCTCCTACATTGGTG 1255
||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1137 CAGAAGAAACAGAGAGAAGAACAAAAGTCTCTTGTCTTGTCATCCCCTCCTACATTGGTG 1196
Query 1256 GATTGCCATTACTAAAATCAAAATTCATTAATACCTAATCAAACAAAATTAAGCAGAAAT 1315
||||||||||||| ||||||||||||| || | | | | ||||||||||
Sbjct 1197 GATTGCCATTACTGAAATCAAAATTCA--AA-A--T--T---------T-AAGCAGAAAT 1239
Query 1316 TGATGAACCAtttttttAAGAAAGTTACTGATTCCTTGCTTTGTACAAGACTTGCAAGAT 1375
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1240 TGATGAACCAGTTTTT-AAGAAAGTTACTGATTCCTTGCTTTGTACAAGACTTGCAAGAT 1298
Query 1376 TCTTCTCTCt-t-tttttt-----CCTTTCTTACTTCCTTAATTTCA-AAGGAAAAACCA 1427
|||||||||| | |||||| |||||||||||||||||||||| ||| |||| | |
Sbjct 1299 TCTTCTCTCTCTCTTTTTTTTTTTCCTTTCTTACTTCCTTAATTTCCTAAG-AAAA-CTA 1356
Query 1428 TATATTATACAAATATATATACTCCCATTAGGCATA-TGCA-ATGCTTTGTAATTACATC 1485
||||||||||| ||||||||||||||||||||||| |||| ||||||||||| ||||||
Sbjct 1357 AATATTATACAATTATATATACTCCCATTAGGCATAATGCAGATGCTTTGTAACTACATC 1416
Query 1486 CAA 1488
|||
Sbjct 1417 CAA 1419
> Ahg939836 jgi|Araly1|939836|scaffold_600380.1
Length=1129
Score = 363 bits (196), Expect = 3e-99
Identities = 606/789 (77%), Gaps = 88/789 (11%)
Strand=Plus/Plus
Query 509 AACAACAACAACAATGCGTATAGATCTAGCAGCAGGAGGTTTCTAGAGACATCTTCATCT 568
|||| ||||||||| || || |||| || ||||||||||||||||||||| ||||| | |
Sbjct 378 AACAGCAACAACAACGCATACAGATTTACCAGCAGGAGGTTTCTAGAGACTTCTTC-T-T 435
Query 569 AACGGGACCACAACGAACGGTGGTGGAGGCAGAGCCGGTTACTATGTTTACCAGTGCAAA 628
|| ||| | ||||| || | ||| |||||||| ||||| ||||||||
Sbjct 436 --------CA-AAC--A--GTGGT---GGTAAAGCAGGTTACTACGTTTATCAGTGCAAG 479
Query 629 ACATGTGACCGGACTTTTCCGTCTTTCCAAGCTCTT-GGTGGGCATAGAGCCAGCCACAA 687
|||||||||||||||||||| ||||| |||||| || ||||| |||||||| ||||||||
Sbjct 480 ACATGTGACCGGACTTTTCCTTCTTTTCAAGCT-TTAGGTGGCCATAGAGCTAGCCACAA 538
Query 688 GAAGCCTAAAGCCG-CTATGGGTCTTCACTCTAACCATGACCACAAGAAG-TCTAACTA- 744
||| |||||||||| || | | || |||| || | ||||| ||||||| | | |||
Sbjct 539 GAAACCTAAAGCCGCCTCT---T-TTTACTCCAATCTTGACCTCAAGAAGAAC-ATCTAT 593
Query 745 -C-GATGACGCCGTTT--C-TCT-C-CATC-TCAACAAC-GTTCTCACCACAACTCCTAA 795
| | |||||||||| | | | | || | | ||||| ||| | || | || | ||
Sbjct 594 GCAAACGACGCCGTTTCACTTGTACACA-CAACCACAACTGTT-T-ACAATAA---C-AA 646
Query 796 CAACAATAGTAACCA-TAGATCGCTTGTGGTATACGGCAAAGG-TAGTAATAATAAGGTC 853
||| || | ||| || |||||||||||| || ||||| |||| ||||| ||||||||
Sbjct 647 CAAGAACAATAA-CAGTAGATCGCTTGTCGTGTACGG-TAAGGCAAGTAACAATAAGGTT 704
Query 854 CATGAATGTGGGATATGTGGAGCCGAATTCACATCCGGGCAAGCATTAGGTGGTCACATG 913
||||||||||| || ||||||||||| || || ||||| ||||| |||||||| ||||||
Sbjct 705 CATGAATGTGGAATCTGTGGAGCCGAGTTTACGTCCGGACAAGCCTTAGGTGGCCACATG 764
Query 914 AGACGCCATAGAGGTGCAGTGGTAG-CCGCAGCAGCCGCCTCTACCGCCACCGT-ATCGG 971
||||| || ||||| |||||||| | || | || | || | | || ||||||| | |||
Sbjct 765 AGACGGCACAGAGGCGCAGTGGTTGTCC-CGGC-GGCG-GT-TGCCCCCACCGTGA-CGG 819
Query 972 TTGCGGCCATTCCGGCTACTGCAAACACGGCTTTGTCATTGTCGCCAATGTCGTTTGATC 1031
| ||||| || ||| | || ||||||| | ||| |||| |||||||||| ||||
Sbjct 820 -T--GGCCA--CC-GCTGCGGCCAACACGGAGCTATCACTGTCTTCAATGTCGTTCGATC 873
Query 1032 AGATGTCGGAGGGTCCA--AT--TC-AG-GCT-CC--CG-TTAAGAGAGCGAGG-AGCGC 1080
| || ||||| ||| || || || | | | || || |||| ||| ||| || |
Sbjct 874 AAATATCGGACGGT-CAGGATCATCTGGTGATGCCAGCGAAAAAGAAAGCTAGGAAG-AC 931
Query 1081 GGTTGTGTCGTTAGATTTAGATCTGAATCTACCTGCCCCGGAAGATGAGAATCGGGTCAA 1140
||| ||||| | ||||| |||||||||||||| || |||||||||||||||||||||||
Sbjct 932 GGTCGTGTCACTGGATTTGGATCTGAATCTACCCGCACCGGAAGATGAGAATCGGGTCAA 991
Query 1141 CGGATTAAGCTTTGCTTCAAAGcaagaa-cacgaacaagaacatgaacaaacacaacaga 1199
|||||| |||||||||||||| ||| || ||||||||||||||| ||| || | | ||
Sbjct 992 CGGATTCAGCTTTGCTTCAAAACAA-AATCACGAACAAGAACAT---CAA-CAGA-C-GA 1044
Query 1200 agaaacagagagaagaacaaaagTCTCTTGTCTTGTCTTCTGCTCCTACATTGGTGGATT 1259
|| || ||||| | |||| ||||||||||||||||||| |||||||| || |||||||
Sbjct 1045 AGCAA-AGAGA-A-GAACCAAAGTCTCTTGTCTTGTCT---GCTCCTACTTTAGTGGATT 1098
Query 1260 GCCATTACT 1268
|||| ||||
Sbjct 1099 GCCACTACT 1107
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56297382110
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5